| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,097,464 | G→T | 7.6% | T69T (ACG→ACT) | EO946_RS05675 → | MarR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,097,464 | 0 | G | T | 7.6% | 518.0 / 2.0 | 217 | T69T (ACG→ACT) | EO946_RS05675 | MarR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (122/67); new base T (2/26); total (124/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.46e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 220 total aligned reads displayed.
AGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACGCCGGCCGGGA > NZ_CP034943/1097331‑1097603 | aGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTAtt > 1:1126731/1‑140 (MQ=255)aGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTAtt > 1:3837176/1‑140 (MQ=255)aGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTAtt > 1:3105232/1‑140 (MQ=255) gggCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGc > 2:1467574/1‑140 (MQ=255) gggCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGc > 2:3404548/1‑140 (MQ=255) gggCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTACTTTCTTGTGTTGGGGACAATGAAACAATCAATGTCACGTCTATTga > 1:2972402/1‑139 (MQ=255) cATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGaaa > 1:1409211/1‑140 (MQ=255) cATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGaaa < 1:2009059/140‑1 (MQ=255) gCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGaa > 2:31085/1‑140 (MQ=255) gCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGaa > 2:1826048/1‑140 (MQ=255) cTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATa < 2:4834876/140‑1 (MQ=255) cTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATa < 2:2791377/140‑1 (MQ=255) cTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATa < 2:1877421/140‑1 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTGTATTGCAGAAAAAATGAATACg > 2:2825679/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:1874579/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:1927093/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:1971274/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 2:4436886/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:4490393/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 2:256365/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:1285712/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:483966/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCGATTGCAGAAAAAATGAATACg > 2:4087034/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCAAGTCTATTGCAGAAAAAATGAATACg > 2:3954961/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCGTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:1432314/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATAGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAAGACg > 1:927893/1‑140 (MQ=255) ctattttaagaagCTCGTTTTCGAGCACGTTAGTAAATCTCAATTATCGTTGAACTAAATTCATGTTCTTTCTTGTGTTGGGGAAAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATCAATACGACAAAAGCGa < 2:4700273/133‑1 (MQ=255) tGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTa > 1:4620979/1‑140 (MQ=255) ctggttGTCGAGCACGGTAGTAAATCTAAATTATCGATGAAATAAATTAATTTTTTTTCTTGTTTTGGGCAAAATCAACAAATAAATTTCACGTCTATTGAAGAAAAAATGAATACCAAAAAAGCGACTGTATCGCGCAt < 2:203428/135‑1 (MQ=255) cTCGTTGTGGAGCACGGGATTAAATCTAATTTATCTATGACAGAATTTATTTTTCTTTGTTGTTTTGGGTAAAATTAACAAACCAATGGCACTTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCAt < 2:4782593/140‑1 (MQ=255) cTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCAt > 1:503670/1‑140 (MQ=255) aGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACaaaa > 1:4802118/1‑140 (MQ=255) aGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACaaaa > 1:3503433/1‑140 (MQ=255) aGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACaaaa > 1:3148949/1‑140 (MQ=255) gggAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTCTTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCt > 2:375660/1‑140 (MQ=255) gAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCg > 1:80914/1‑140 (MQ=255) aaTCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGcgcg > 2:806792/1‑140 (MQ=255) aaTCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGcgcg > 1:1547665/1‑140 (MQ=255) aTCTAAATTATCGATCAAAAAAATAATTTTTCTTTTTTGTGTGGGGCAAAATCAACAAAACAATGTCACTTCTATTCAAAAAAAAATGAATCCCACAACCGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCgg < 1:4678405/140‑1 (MQ=255) aTCTAAATTATCCATCACATAAATCCATGTCCTTTCTTGTGTTGGGCACAATCACCCAATCATGGTCACGTCTATTGCACAAAAAATCAACCCCACAAACGCGACGGTATCGCGCATCAGCACAAAATTGCTCGGCGCgg < 1:4965210/140‑1 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGttt > 1:344074/1‑140 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGttt > 1:770136/1‑140 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGttt > 1:604898/1‑140 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGttt > 1:4355732/1‑140 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGttt > 1:3893505/1‑140 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGGCTATTGCAGAAAAAATGAATACGACAACAGCGACTGTATCGCGCATCAGCACAATATTGCTCGGCGCGGGttt > 1:3283368/1‑140 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGCACAATGAACCAATCAATGTCACGTCTATAGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGttt > 1:23767/1‑140 (MQ=255) aaTTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTc > 1:2641398/1‑140 (MQ=255) aaTTATCGATGAAAGAAATTCAGTTTCTTTCTGGTGTGGGGGACAATGAAACAATCAAGGTCACGTATATTGCATAAAAAATGAATACCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTc < 2:55240/140‑1 (MQ=255) ttATCTATGACAGAAATTCTTGTTCTTTCTTGTTTTGGGGAAAATCAACAAATAAATGTCACGTCTATTGAACAAAAAATCAAACCCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCt < 1:1532319/140‑1 (MQ=255) ttATCGATGAAAGAATTTCTTTTTCTTTCTGGTGTTGGGCACATTGAACCAAGCAAGGTCACGTCTATGGCAGAAAAATTGAATCCGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCt < 2:3568426/140‑1 (MQ=255) tggATGAAATAAATTCTTGTTCTTTTTTGTGTTGGGGACAATCAACCAATCATTTTCACTTATTTTGCATAAAAAATTAATCCCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:1036440/138‑1 (MQ=255) tctaTGACATAAATTCAGTTTGTTTGTTGTTTGGGGCAAAATTAACAAAACAATGTCACGTATAGTGAACAAAAAATGAATACCACACACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:4629572/137‑1 (MQ=255) tctaTGACAGAATTTATTGTTCTTTATTGTGTTGGGGACAATCAACAAATAATTGTCAGGTCTTTTGCACAAAAAATGAATCCCACAACCGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:3086338/137‑1 (MQ=255) tctaTGACAGAAATTAATTTTCTTTTTTGTTTTGGGCAAAATGAACAAATCATTGTAACTTATTTTGCATAAAAAATTAATACCACAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:2909024/137‑1 (MQ=255) tCGATGACAGAAATTCTTGTTCTTTGTTGTGTTGGGGACAATGAAACAATCATTGTCACGTCTTTTGAAGAAAAAATTAATACCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:3588288/140‑1 (MQ=255) tCGATCACATAATTTATTTTTTTTTGTTGTTTTGGGGAAAATTAACAAATAAATGTCAGGTATATTGCACAAAAAATGAATACCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:4214921/140‑1 (MQ=255) actaTGACACAAATTCATGTTCTTTCTTGTGTTGGGCAAAATTAACAAATCAATGTCACTTCTATTGAACAAAAAATCAATACGACAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 2:4370528/137‑1 (MQ=255) gATGACATAAATTCTTGTTCTTTCTTGTGTTGGGCACAATTAACCAATCATTGTAACGTCTTTTGCATAAAAAATTAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTcaca < 2:1732209/140‑1 (MQ=255) gcgaGAAATTATTGATCTTTCTTGTCTTGGGGCCAATGAACAAATCATTGTCACGTTTATTCAAACAAAATTCAATACCAAACAAGCGACTGTATCGCGCATAAGCACAAAATTGCTCGGCGCGGGGTTCCTTCACAGaa < 2:881597/137‑1 (MQ=255) gaaataaaTTAATTTTCTTTCTTGTGTTGGGCACAATCAACAAATAAATGTCACTTATTTTCCATAAAAAATGAATCCCAAAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGaa < 1:271162/135‑1 (MQ=255) gACATAAATTCATGTGATTTCTTGTGTTGGGCAAAATCAACCAATCAAGGGCAGTTATATTGCATAAAAAATGAATACCCCACCCGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGaa < 1:1609032/140‑1 (MQ=255) gACAGAATTTCATTTTTTTTATTGTTTTGGGCAAAATGAACAATTAAATTTCACTTCTATTGAAAAAAAAATAAATACCAAAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGaa < 1:2239296/140‑1 (MQ=255) cacacAAATCCCTGTTCGTTCTTGGGTGGGCCCCAAACAACCAACCAATGCCACGCCTATCCCACAAAAAACCACTCCCCCACACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGaa < 1:2750390/139‑1 (MQ=255) cataatttCTTGTTCTTTCTGGTTTTGGGCACAATTAACCAATCATGTTCACTTCTTTTCCAGAAAAAATAAAAACCAAAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAaca < 1:1146105/134‑1 (MQ=255) cataaaTTCATTTTGTTTCTTGTGTGGGGGACAATCAACCAATCAATGTCACGTCTATTGCACAAAAAATTAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAaca < 2:242043/137‑1 (MQ=255) cacaaaTTCATGTTATTTCTTTTGTTGGTCAAAATTAACAAAACAATTTAACTTATATTCCACAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAaca < 2:4355732/137‑1 (MQ=255) cAGAAATTCTTGTTCTTTCTTGTGTTGGGGAAAATGAACCAATAAATTTCACGTCTATTGCAGAAAAAATGAATACGAAAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAaca < 2:5015143/140‑1 (MQ=255) aataaaTTAATGTTATTTCTTTTTTTGGGCACAATGAACAAATCAATGTCACGTATATTGAAGAAAAAATGAATACGACAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAaca < 2:3893505/137‑1 (MQ=255) aaGAAATTCATTTTCTTTCTTGTGTTGGTGAAAATTAACCAATAAATTTAACTTCTATTGCTGAAAAATTTAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAaca < 2:3690053/139‑1 (MQ=255) tttttttattTTGTGGGGGAAAATGAACAAATAATTGTCAGGTCTTTTGCATAAAAAATCAATACCACACACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGa < 1:2106268/136‑1 (MQ=255) tttgtttctgGTTTTGGGGAAAATTAACCAATAAATGTCACTTTTATTGCAGAAAAATTTAATACTCCAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGa < 2:460249/136‑1 (MQ=255) gTTTTTTCTTGTGTTGGGGAAAATTAACAAATCAATGTCACTTATTTTGAACAAAAAATGAATACCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGa < 1:3954961/140‑1 (MQ=255) gTTCTTTTTTGTGTTGGGTACAATTAACAAATCATTGTCACGTCTATTGCACAAAAAATTAATACCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGa < 2:3182112/140‑1 (MQ=255) gTTCTTTCTTGTTTTGTGGAAAATGAACAAATCATTGTCACGTCTATTGCATAAAAAATGAATACGAAAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGa < 2:4578952/140‑1 (MQ=255) gTTCTTTCTTGTTTTGGGAAAAATTAACCAATCAATTTCACGTATATGGCACAAAAAATTAATCCCAAAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGa < 1:2170132/140‑1 (MQ=255) ctttcttGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATaa > 1:2488716/1‑140 (MQ=255) tgtTGGGTACATTTAACCAATCAATGTCACGACTTTTGCATAAAAAATTAATCCGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAagg < 2:2675890/140‑1 (MQ=255) tgtTGGGGAAAATGAACAAATAAATGTAACTTATATTGAACAAAAATTCAAACCCACAACCGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAagg < 1:3404548/140‑1 (MQ=255) ttGGGCAAAATGAAACAATAAATGTCACGTCTTTTCCAAAAAAATTGAATACGACAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAaggag < 1:256365/140‑1 (MQ=255) ggggAAAATCAACCAATAAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGt < 2:3737134/140‑1 (MQ=255) gggACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGCTAACAAAAAGGAGGTc > 1:709525/1‑140 (MQ=255) gggACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTc > 1:1797743/1‑140 (MQ=255) gggACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTc > 1:3737134/1‑140 (MQ=255) gggACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTc > 2:1628404/1‑140 (MQ=255) gACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACCAAAAGGAGGTCTa > 2:1378554/1‑140 (MQ=255) gACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTa > 2:5106053/1‑140 (MQ=255) aaTGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACtt > 1:146941/1‑140 (MQ=255) aaTGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACtt > 1:3232964/1‑140 (MQ=255) atcaatGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGAc > 1:4181344/1‑140 (MQ=255) tcaatGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACg > 1:4438213/1‑140 (MQ=255) tcaatGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACg > 1:4000900/1‑140 (MQ=255) tcaatGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACg > 2:1820888/1‑140 (MQ=255) tcaatGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACg > 2:1316122/1‑140 (MQ=255) tcaatGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACg > 2:1163718/1‑140 (MQ=255) tGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACgccgg > 1:863290/1‑140 (MQ=255) cGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACGCCGGCCggg > 2:3332820/1‑140 (MQ=255) cGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACGCCGGCCggg > 1:1518389/1‑140 (MQ=255) cGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACGCCGGCCggg > 2:1044612/1‑140 (MQ=255) gTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACGCCGGCCGGGa > 1:3025098/1‑140 (MQ=255) | AGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTGACGCCGGCCGGGA > NZ_CP034943/1097331‑1097603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |