| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,268,725 | C→A | 7.1% | intergenic (+73/+137) | catR → / ← EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,268,725 | 0 | C | A | 7.1% | 529.0 / 4.4 | 197 | intergenic (+73/+137) | catR/EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base C (36/139); new base A (20/2); total (56/141) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 203 total aligned reads displayed.
GGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACATGGGCT > NZ_CP034943/3268586‑3268861 | ggCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTGTTTTTTTTTGATTTTGCAGGTAAAAAAc > 1:2816918/1‑140 (MQ=255)ggCCCCCATCTTGGGTGAGATGTCTAACTGGGCGACGGATTGGATTGACCCTTCCGTTCTTGACTAAGTGCTAAAACGGTGCTGATCTCAATGGCGAGAACAGAGCCGTTGTTTTAGTTTTCATTTGCCCGGTGAAAAAc > 1:1859967/1‑140 (MQ=255) tCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCACAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 2:47001/140‑1 (MQ=255) tCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 2:1258023/140‑1 (MQ=255) tCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 2:4016150/140‑1 (MQ=255) tCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTtctc < 2:250025/140‑1 (MQ=255) ttggTGAGATTTCTAAATGGGCGACTGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:425381/138‑1 (MQ=255) tggtttagaTTTCTAAATGGGCGAAGGATTGGATTGACCCTTCATTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTGGCCAGGTAAAAAACGACTTCTCAGc < 1:2049111/134‑1 (MQ=255) tcggTGAGATTGCTAAATGGGCGACGGATTGGATGGACCCTTCCTTTCTTGACTAATGGCTAACACGGTTCTGATCTCAAAGGCGCGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:3134165/138‑1 (MQ=255) tGGGTTAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:2052134/140‑1 (MQ=255) tGGGTGAGTTTTCTAATTGGGCGACGTATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCTTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:1035548/140‑1 (MQ=255) tGGGTGAGATTTGTAACTGTGCTACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAAGGGTTCTGTTCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATGTGCCAGGTAAAAAACGACTTCTCAGc < 2:1850129/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTGATTTGCCAGGTAAAAAACTAATTCTGAGc > 1:5165035/1‑140 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTTCCAGGTAAAAAACCACTTCTCAGc > 1:3147320/1‑140 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 1:4398467/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:2259800/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:1484675/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:1457610/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:76730/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTACTCAGc < 1:3849417/140‑1 (MQ=255) tGGGTGAGATTTATAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGc < 2:3594361/140‑1 (MQ=255) gggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGcc < 1:539303/140‑1 (MQ=255) ggTGAGATTTCTTAAGGGTCTACGGATTGTATTGACTCTTCTTTTCTTGATTTATTTATAAAACGGTTCTTATCTCAAAGGCGAGATAAGTGCGGTTTTTTTATTTTTCATTTGACAGGTAAAAAAAGACTTCTCAGCCg < 2:3170276/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGTATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:67324/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTTGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:3054573/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAACACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTGGCCAGGTAAAAAACGACTTCTCAGCCg < 1:272835/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:4628261/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:2624515/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:1395179/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:1425983/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:3906652/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:2239881/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 1:2836997/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTATGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:5051303/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGAGTGGATTGACCCTTCCTTTCTTGACTAAGTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:3537004/140‑1 (MQ=255) ggTGAGATTTCTAAAGGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATGTGCCAGGTAAAAAACGACTTCTCAGCCg < 2:1659285/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:2923495/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:3254977/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:1095939/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGata < 1:911089/140‑1 (MQ=255) agaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAATAGCCGTTTTTTTATTTTTCAGTTGGCAGGTAAAAAACGACTTCTCAGCCGatat > 2:2842623/1‑140 (MQ=255) agaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCAGTTTCGCGGTAAAAAACGACATCTCAGCCGatat > 2:3954875/1‑140 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGatata < 1:2759374/140‑1 (MQ=255) aTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTAATTTGCCAGGTAAAAAAAGAATTCTCAGCCGatatat > 2:740475/1‑140 (MQ=255) aaaTGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGa < 2:2335635/140‑1 (MQ=255) ggCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTGATTTTCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAAcccc > 2:520034/1‑140 (MQ=255) ggCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAAcccc > 2:3670544/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAATGGCGAGAAAAGAGCCGTTTTTTTTTTTTTAATTTGCCCGGTAAAAAAAGACGTGTAAGCCGATATATATTATAACCCCCAATTTCGTTTTTAGcc > 1:2276719/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGAATTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGcc > 2:3803393/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTAATTTGCCAGGTAAAAAAAGACTTCTCAGCCGATATATAGTAGAACCCCACCTTGCGTTTTTAGcc > 2:4303378/1‑140 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTGTTTTATTTTTGCTTTGGCCGGTAAAAAACGACGTCTCAGGCGCGATATAGTGTTACCCCACAGTGGGTTTTTatgc > 1:3826216/1‑137 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTCATTTTCCAGGTAAAAAAAGACTTATACGCCGGTATATATTAGAAACCCACAATTCGTTTTTAgac > 2:3933816/1‑138 (MQ=255) ccgtccttTATTGACTAATTGCTAAAACGGTTCTGATCTCAAAGCCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCga < 2:4721374/137‑1 (MQ=255) ccgaccttACTTCACTAATTGCTAAACCGGTTCTCATCTCAAAGCCGAGAAAAGAGCCGTTTTTTTATTTTTCAGTTGCCACGTAAAAAACGACTTCTCAGCCGAGATATAGTAGAACCCCACATTGCGTTTTTAGCCga < 1:4325347/136‑1 (MQ=255) ttccttTCTTGACTAATTGCTAACACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCgaag < 1:4706986/140‑1 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTTTTTTTGAATTTGCAGGTAAAAAAAGACTTCTACGCCGAGATATAGTAGAACCCCACAGTGCGTTTTTATCCgcaga > 1:87742/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTTGCCGGTTAAAAACGACATCTCCGCCGATATATAGTAGTACCCCACAATTCGTTTTTAGCCgaaga > 1:3791930/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTAATTTTGCAGGTAAAAAAACACTTATCAGCCCCGATAAAGTATAACCCCACAATTCGTTTTTATGCgaaga > 1:3446856/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTAATTTTCCACGTAAAAAAACACTTATCAGCCGATATATATTAGAAACCCACATTGCGTTTTTAGCCgaaaa > 1:1286705/1‑138 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTAATTTGCCAGGGAAAAAACGACGTATAAGCCGATATATATTATAACCCCAACTTGCGTTTTTAGCCgaaga > 2:2105074/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTGATTTTGCAGGTAAAAAAAGACATCTCAGCCGATATATATTAGAACCCCACATTGGGTTTTTTTCCgaaga > 1:385960/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTGATTTGGCAGGTAAAAAACGACTTCTGAGCCGCTATATTGTAGAACCACACAATTCGTTTTTTTCCgaaga > 1:1717067/1‑140 (MQ=255) aCTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGagcag < 1:1159694/140‑1 (MQ=255) gCTAAAACGGTTCTGCTCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCCTTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGa < 1:3980818/140‑1 (MQ=255) cTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGaa < 1:5115931/140‑1 (MQ=255) cTAAAACGGTTCTGATATAAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTATCCGAAGAATTTGAGCAGCTGGAGaa < 2:4454206/140‑1 (MQ=255) tCTGATCTCAAAGGCTAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt < 1:794484/140‑1 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt < 2:658854/140‑1 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACGTCTCAGCCGATATATATTAGAACCCCACATTGCGTTTTTATCCGCAGAATTTGTGCACCTGGCGAAAGAGCTTCAt > 2:1735592/1‑140 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTAATTTGCCAGGTAAAAAAAGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt > 2:1025975/1‑140 (MQ=255) aTCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTTCCAGGTAAAAAACGACTTCTCAGCCCATATATAGTAGAACCCCACATTGCGTTTTTATCCGAAGAATTTGAGAAGCTGGCGCAAGAGCGTCAAgaga > 2:1526300/1‑140 (MQ=255) ctcCAAGGCGACAAAAGAGCCGTTTTTTAATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaag < 1:4217164/140‑1 (MQ=255) ctcAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaag < 1:1755663/140‑1 (MQ=255) tcAAAGGCGAGAAAAGAGGCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACCTTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaaga < 2:33720/140‑1 (MQ=255) tcAAAGGCGAGAAAAGAGCCTTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaaga < 2:1826153/140‑1 (MQ=255) tcAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaaga < 1:197774/140‑1 (MQ=255) aaaGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTTCCCGGTAAAAAACGACTTCTCAGCCGATATATATTAGAACCCCACAATGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAACATg > 2:4111332/1‑140 (MQ=255) ggCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGAt < 1:2097962/140‑1 (MQ=255) ggCGAGAAAAGAGCCGTTTTTTTATTTTTCATTGGCCAGGTAAAAAACGACGTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGAt < 1:4668279/140‑1 (MQ=255) cGAGAAAAGAGCCGTTTTTTTATTTGTCATTTGGCAGGTAAAAAACGACTTCACAGCCCATATATAGTAAAAACCCACATTGCGTTTTTAGCCCAAAAATTTGAGCATCTGTCGAAACACCTAGATTAGAAAATGTATCa > 2:3611740/1‑140 (MQ=255) gaAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATTTATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 2:4655522/140‑1 (MQ=255) gaAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACCTTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 2:3826216/140‑1 (MQ=255) gaAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 1:842348/140‑1 (MQ=255) gaAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 2:1718227/140‑1 (MQ=255) gagCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACAt < 2:5082251/140‑1 (MQ=255) agCCGTTTTTTTATTTTTGATTTTCCAGGTAAAAAACGACTTCTCAGCCGATATATATTATTAACCCAAATTGCGTTTTTATCCGAAGAATTTTAGCAGCTTGCGAAATAGCTTCATGAGAAAATGGATAAGTTCACAtt > 2:4507893/1‑140 (MQ=255) tttCATTTGCCCGGTAAAAAACGACTTCTCAGCCGAGATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 1:156098/140‑1 (MQ=255) tttCATTTGCCAGGTAAAAAACGCCTTCTCAGACGATATATATTAGAAACCCACATTGCGTTTTTAGCAGAAGAATTTGATCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 2:3877603/140‑1 (MQ=255) tttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 1:1950457/140‑1 (MQ=255) tttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 1:4776458/140‑1 (MQ=255) tttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGt < 2:2457796/140‑1 (MQ=255) ttCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTc < 1:520034/140‑1 (MQ=255) tttGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGa < 2:963702/140‑1 (MQ=255) tttGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGa < 1:760062/140‑1 (MQ=255) tttGCCAGGTAAAAAACGACTTCTCAGCCCATATATAGTACAACCCCACATGGCGATTATAGCCGAAGAATTTGCGCCGCTGGCGAAAGAGCTTCATGAGAACATGGATCAGTTCACATATAACATAACCCACGTCCAGa < 2:2402153/140‑1 (MQ=255) ggTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACa < 2:3446856/140‑1 (MQ=255) ggTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACa < 2:1286705/140‑1 (MQ=255) gTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACAt < 1:709365/140‑1 (MQ=255) gTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACAt < 1:4475078/140‑1 (MQ=255) gTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACAt < 1:3597471/140‑1 (MQ=255) | GGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTCATTTGCCAGGTAAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACATGGGCT > NZ_CP034943/3268586‑3268861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |