| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,446,962 | C→A | 12.2% | M208I (ATG→ATT) | degU ← | two‑component system response regulator DegU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,446,962 | 0 | C | A | 12.2% | 663.3 / 16.1 | 332 | M208I (ATG→ATT) | degU | two‑component system response regulator DegU |
| Reads supporting (aligned to +/- strand): ref base C (107/160); new base A (56/2); total (170/162) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.52e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 349 total aligned reads displayed.
TTATAACTCTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATG > NZ_CP034943/3446823‑3447101 | ttATAACTCTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAcattc > 2:4193884/1‑140 (MQ=255) tataACTCTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAcagtca > 1:3763230/1‑140 (MQ=255) ctATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCCTTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTGGATTCAGTGTTTg > 1:1191175/1‑140 (MQ=255) ctATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTg < 2:3827284/140‑1 (MQ=255) tATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAAtttttttc > 2:2758678/1‑138 (MQ=255) tATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCAtttttttc > 2:2494405/1‑138 (MQ=255) tATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCACAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGTCTTGCGTCCGGTCGTTTAAATTAATTTTTTga > 2:1455525/1‑139 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCa < 1:1802237/140‑1 (MQ=255) ttGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCaa < 1:3003751/140‑1 (MQ=255) ttGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCATTTTTTGCaa > 2:4985053/1‑140 (MQ=255) aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAatat > 1:4983098/1‑140 (MQ=255) aaaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCt < 2:150951/140‑1 (MQ=255) aaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTc > 1:4836435/1‑140 (MQ=255) aCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCa > 2:4051877/1‑128 (MQ=255) ccTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTAATTTTTTTCAAAATATTGCTCACATGGtt > 2:3258097/1‑140 (MQ=255) aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 1:4606283/140‑1 (MQ=255) aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCGACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 1:4418244/140‑1 (MQ=255) aaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACg < 1:1475114/140‑1 (MQ=255) aaaGACCTGCCCAGTAAAAGGCAAGTCTATTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACg < 2:3742816/140‑1 (MQ=255) aaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACgg < 2:785661/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCCCACCGGCTTGCGTCCGGTCGTTTACAGTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 2:693948/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 1:547967/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 1:3833281/140‑1 (MQ=255) gCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTGCTCACATGGTTTTTCACGGTTTtgtc > 2:1318477/1‑140 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCCGCCATTTTTAATGGCGACCACACCGGCTGGCGTCCGGTCGTTTTCATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 2:3121951/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 1:3227165/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 1:2216089/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 2:4382330/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTGAAAATATTGCTCACATGGTTTTTCACGGttttgtaa > 1:1730595/1‑136 (MQ=255) cccACTAAAAGGCAAGTCTCTTATTATCCTATCTCAGTTCTCCCCAGCCAGTTTTAATGGCGACCACACCGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 2:4444268/140‑1 (MQ=255) aaaacccAAGTCTCTTATTATACTATCTCATTTCTACCCACCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATa < 1:3035756/134‑1 (MQ=255) agacactTATTATAAGATCTCATTTCTACCCCCCCATTTTTAAAGCCGACCACAACCGATTGCGTCCGGTCGTTTAAATTCATTTTTTTAAAAATATTCCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 2:2348559/135‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 2:1120812/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 2:4548841/140‑1 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCATTCATTTTTTTCAAAATATTGCTCACAAGGTTTTTCACGGGTTTATAACTTATAAACAATGAt > 1:1234588/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCATTCATTTTTTGCAAAAAAATGCTCACATGGTTTTTCAAGGTTTTATAACTGATAAACaaataa > 1:2468203/1‑136 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTGAATTTTTTCAAAATATTGCGCAAAAGGTTTTTAAACGTTTTATAAAAGATAAAAAAAGAt > 1:2319451/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTGCTCACATTGTTTTTAACGGTTTTGTCACTGATaaaaaagtat > 1:4053747/1‑136 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAAGAt > 2:5171987/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTCAAAATATTTCTCACATGGTTTTTCACGGTTTTCTAAATTATAAAAAATGAt > 2:263372/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAAATTTTTTCAAAAAATTTCTCAAATGGTTTTTAACGGTTTTGTGAATGATAAACAAAGAt > 1:1450240/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTCAATTTTTGCAAAATAATGCGCACAACGTTTTTAACCGTTTTATAACAGATAAACAAAGAt > 1:1285190/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAACTTGATTTTTTGCAAAATATTGATAACATGGTTTTTAACGGTTTTATAACATATaaaaaaagtt > 1:2752915/1‑136 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAACTTAATTTTTTTCAAAATATTGCTCACATGGTTTTTCACGGTTTTATCACTGATAAAAAATGAt > 1:598107/1‑140 (MQ=255) tctcTTATTATACTATCTCATTTCTCCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTACGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAtt < 2:738471/140‑1 (MQ=255) tctcTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAtt < 1:969783/140‑1 (MQ=255) ctctTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTGCAAAATATTGCTCAAATTGTTTTTAACGGTTTTCTCACTTATAAACAATTATTc > 2:5053603/1‑140 (MQ=255) ctctTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTGCAAAAAATTGCTCACATGGTTTTTAACGGTTTTCTCACTGATAAAAAATGAtta > 2:800354/1‑139 (MQ=255) ttattaTACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCAcc < 1:3123511/140‑1 (MQ=255) attatACTCTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAAATTCATTTTTTTCAAAATATTGCTCACATTGTTTTTCACCGTTTTATCCATTATAAAAAATTATTAAACaa > 2:2067348/1‑140 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTTCTAACAAGGTTTTTCAAGGTTTTGTCACTGATAAACAAAGATTCACCAATAcc > 2:3449254/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTAACATGGTTTTTAACGGTTTTCTAACTGATAAACAATGATTCACCAATAACGCgg > 2:91816/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTGCAAAATATTGATCACATGTGTTTTAACGGTTTTCTAACTGATAAACAATCATTAAACAATAACGCgg > 2:3212430/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCATTTTTTGCAAAAAAATTCTCACATGGTTTTTAACGTTTTTATCACTGATAAACAAAGATTCAACAATaaccccg > 2:3098319/1‑134 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAAAAATTTTTTGCAAAAAATTTATCACAAGGTTTTTAAACGTTTTTTCACAGATAAACAAATATTAACCAAAAAcgccg > 1:920854/1‑138 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTGCCAAAAAATGCTAACATGGTTTTTAACCCTTTTCTCACAGATAAAAAAAGATTCACCACTACAGCgg > 1:1965143/1‑140 (MQ=255) aTCGCATTTCTAACCAGCCATTTTTAATGGCGACCACACCGGCTTGCGTCAGGTCGAGTAAATTAATTTTTTGCAAAAAATTTGTCACATGGTGTTTCACCGTTTTCTCACGGCTTAACAAAGATTAACCCATACCGCgg > 2:4706628/1‑140 (MQ=255) tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAAATTCATTTTTTTTAAAATATTTCTTACATGGTTTTTAAAGGTTTTATCAATTATAAAAAAAGATTAAACAAAAACCCGGt > 1:2838897/1‑140 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTg < 2:1487323/140‑1 (MQ=255) cATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTAACGGTTTTCTCACTGATAAAAAATGATTCAACAATAACGCGGtttc > 2:4598034/1‑138 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCCAAAAATTTCGCACATGGTTTTTAACGGTTTTATAACAGATAAACAAAGATTCACCCAAAACCCGGTTGcgt > 1:1014600/1‑138 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACCTTCAATTTTTTCAAAATAATTCGCACAATGTTTGTGACGGTTTTCTCACTTATAAAAAATGATTAACCAATACCGCGGTTGCtttttac > 1:2546485/1‑138 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCCAAATATTGCTAACATGGTTTTTCACGGTTTTATCACTGATAAACAAAGTATCACCAAAACCCCGGTTGCattttgc > 2:623800/1‑138 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTGGCTTTTTcc < 2:3619087/140‑1 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTGAAAATATTTGTCACATGGTTTTTCACGGGTTTATCACTGATAAACAATGATTGCCCAAAACCCCGGTTGCtttttgc > 1:2091712/1‑138 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTCATTTTTTGCAAAATATTTCTCACATGGTTTTTCAAGGTTTTATCACTGTTAAAAAATTATTAAACAATAACGCCGTTGCtttttac > 2:2951668/1‑138 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCATGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTGCTCACATGGTTTTTAACGTTTTTCTCACTTATAAACAATTATTCACCAAAACAGCGGTTGCtttttac > 2:3870176/1‑138 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTGCAAAATATTTCTCACATGGTTTTTCAAGGTTTTCTCAATTATAAACAATGATTAAACAATACCGCGGTTGGTTTTTGCGGCt > 1:3577061/1‑140 (MQ=255) gCCATTTTTAATGGCGAACACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTg < 2:964359/140‑1 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTTCTCAAATTGTTTTTAAAGGTTTTGTCACTGATAAAAAATGATTCACCAATAAAGCGGTTTCTTTTTACGTCTGc > 2:1735419/1‑140 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTCAAAATATTGCTCACATGGTTTTTCACGGTTTTGTCACTGATAAAAAATGATTGACCAATAACGCGGTTGCTTTTTCCGTCTgg > 2:3994444/1‑139 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATGATTTTTTGCAAAAAATTGCTCCCATGGTTTTTAACCGTTTTTTCACTGGTAAAAAAACATTCACCAAAAACCCGGTTGCTTTTTGCGTCAGc > 1:2935653/1‑140 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCAATTTTTGCAAAATATTGCTCACAAGGTTTTTCACGGTTTTCTAACTGATAAACAAAGATTCACCAAAACAGCGGTTGCTTTTTCAGTCTGc > 2:1045322/1‑140 (MQ=255) ccATTTTTAAAGGCGACCACAACGGCTTGCGTCCGGTCCTTTACCATCATTATTTTCGAAATATTGCTAAAATGCTTTTTCACGGTTTTATAAATGATAAACAATGATTAACAAATAACCAGGTTGGAGTTTCCGTCTga > 2:4021729/1‑139 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:3449254/140‑1 (MQ=255) cATTTTTAAGGGCGACCACACCGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 2:3567830/140‑1 (MQ=255) tttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTTCATTAAATTTTTTCAAAAAATTTGTCCCCTGGTTTTTGACCGTTTTATCACTTATAAAAAAAGATTAACCAAAACCCCCGTTGGTTTTTACGtggtcaac > 1:119993/1‑133 (MQ=255) ttttAATGGCGACCCCCACGCCTTGCCTCCGGTCGTTTACATTCATTTTTGGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCCCGGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:4104469/140‑1 (MQ=255) ttttAATGGCGACCACACCGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:1617310/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGc < 1:4193884/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGc < 2:421855/140‑1 (MQ=255) aTGGCGACCACACCGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTg < 2:2973986/140‑1 (MQ=255) gCGACCACAACGGATTGCGTCCGGTCGTTTACATTCATTTTTAGCAAAATATTGCTAACATGGTTTTTCACGGTTTTCTCAATGATAAACAATGATTCACCAATACCGCGCTTGCTTTTTCCGTCTGCAAGCATCTgcat < 1:4373962/140‑2 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:5041763/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTGGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:2067348/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:4888865/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTGTACCTTCATTTTTTTCAAAATATTGCACACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTTCAAGCATCTgcagca > 2:1189084/1‑140 (MQ=255) aCCACAACGGCTTGCGTCCGGTCGTGTTCAATCATTTTTTTCAAAATAATTCTCACATGGTGTTTGACGGTTTTATCTAGTCTAAAAAATTATTGAACAAAAACCCGGTTGGTTTTTCAGGGTGGAAGCATCGGCAGCAc > 1:4655005/1‑140 (MQ=255) cacaACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 1:3246778/140‑1 (MQ=255) cGGCTTGCGTCCGGTCGTTTTCATTAATTTTTTTGAAAATATTTCTCACATTGTTTTTGACGGTTTTGTAACAGATAAAAAATGATTCACCAAAACCGCGGTTGGTTTTTGCGTCTGCAAGCATATGCCGCCCGTcacaa > 1:4021187/1‑139 (MQ=255) tGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:1849072/140‑1 (MQ=255) tGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:199686/140‑1 (MQ=255) tGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:5091170/140‑1 (MQ=255) tGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:2237090/140‑1 (MQ=255) tGCGTCCGGTCGTGTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTTGTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTaccc > 2:1957823/1‑139 (MQ=255) gTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATTGTTTTTCACGGTTTTATAACTTATAAAAAATGATTCAACAAAAACCCGGTTTCTTTTTCCGTCTGCAAGCATCTGCAGCACTTAACATTCccgccg > 2:3776788/1‑140 (MQ=255) gTCCGGTCGTTTACATTAATTTTTTTCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTGCGGGTGCAAGCAGATGGAGCCCGTGACATTCccgccg > 2:1807868/1‑140 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:1589787/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:3312480/140‑1 (MQ=255) attcattTTTTGCACAAGATTGCTCACCTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTa < 1:4269651/140‑1 (MQ=255) | TTATAACTCTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATG > NZ_CP034943/3446823‑3447101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |