| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,539,638 | G→T | 8.3% | P105P (CCC→CCA) | EO946_RS18215 ← | T7SS effector LXG polymorphic toxin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,539,638 | 0 | G | T | 8.3% | 584.2 / 7.2 | 238 | P105P (CCC→CCA) | EO946_RS18215 | T7SS effector LXG polymorphic toxin |
| Reads supporting (aligned to +/- strand): ref base G (88/119); new base T (26/3); total (115/123) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.38e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 251 total aligned reads displayed.
TGGGCATCGCCCATCTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCTTTCGACGATTTCCGCCTGT > NZ_CP034943/3539501‑3539776 | tGGGCATCGCCCATCTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTggg < 1:45940/140‑1 (MQ=255)tGGGCATCGCCCATCTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTggg < 2:1412091/140‑1 (MQ=255)tGGGCATCGCCCATCTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTggg < 2:1108647/140‑1 (MQ=255)tGGGCATCGCCCATCTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTggg < 1:3846531/140‑1 (MQ=255)tGGGCATCGCCCATCTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTggg < 1:1882298/140‑1 (MQ=255)ggggCATCGCCCATCGTCTCGGCCTAGTCGTCACGCGTGTACATGTCGAGATCAATACTATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCCTTggg < 1:2673499/139‑1 (MQ=255) gggCATCGCCCATCTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGc < 2:1289011/140‑1 (MQ=255) cTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTGTTTTTTAGCGGAGCAAAATTCTGAGGGTTTGAAGTCTCCCTTGGGGCGCTGATGATCCa > 1:4183745/1‑140 (MQ=255) cTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCa < 2:3706255/140‑1 (MQ=255) cTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCa < 2:4328653/140‑1 (MQ=255) aTCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTCTTTATTAGCGGAGACAAATTCTGAGGCTTTCAAGTCGCCATTGGGCAGCTCATGATACaaaa > 1:5030395/1‑140 (MQ=255) aTCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTATTTATGAGGGGAGTCAATTTCTGAGGGTTTCAATTATGCATTGGGCAGCTCATGATACaaaa > 1:4959783/1‑140 (MQ=255) aTCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATGTATTGTTTAAGATCGGACACAAATTATGAGGCTTTTAAATATTCAATTGGCCTCTCATGATACaaaa > 1:4740440/1‑140 (MQ=255) tCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGGTGATGCCTGACAAAATGGAGTCGATTGGTTGTTTATGGGCGGCGACAATTTCTGAGGCGTTGACGGCTGCATTGGGGCGCTCATGATCCcaaaa > 2:4038188/1‑140 (MQ=255) tCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGGTGTTTAATTGCGGGTACCATTTGTTAGGCGTTCAAATGTCCAATGGGCAGCTCATGATACaaaaa > 1:62761/1‑140 (MQ=255) tCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCaaaaa < 2:3061577/140‑1 (MQ=255) cGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTCTTTATGATCGGAGACAATTTCTGAGGCGTTCAAGTCTGCATTGGGCCGCGAATGATCCaaaaaa > 2:3985666/1‑140 (MQ=255) cGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGAGTTGTTATTTATGAGCGGAGACAATTTCTGAGGCTTTGAAGTCTCCCTTTGGCAGCTCATGATCCaaaaaa > 2:120955/1‑140 (MQ=255) ggCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAaag < 1:2198642/140‑1 (MQ=255) cATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTCGTTATGATCGGAGACAAATTCTTAGGCTTTAAACTCAACAATGTGCAGCACATGATACAaaaaaaaa > 1:245295/1‑140 (MQ=255) cATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGGTGTTTATGAGCGGGGACAATTTGTGAGGCGTTGAAGTCGCCATTTGGCCGCGCCTGACCCAAAAaagaa > 1:744021/1‑140 (MQ=255) cATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGAGTTGTTGTTTATGAGCGGAGACAAATTATGGTGCTTTGAACTATGCATTTGGCACCTCAAGATACAAAAaagaa > 1:1562563/1‑140 (MQ=255) tAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGt < 2:260356/140‑1 (MQ=255) tAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGt < 2:382288/140‑1 (MQ=255) tcgtcAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTc < 2:522085/140‑1 (MQ=255) tcgtcAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTc < 1:3294662/140‑1 (MQ=255) tcgtcAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTAAAGTCTCCATTTGGCAGCTCATGATCCAAAAAAGAAGTTTc > 2:4959224/1‑140 (MQ=255) tcgtcAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTATTGTTTATGAGCGGCGACAATTTCTGAGGCTTTCAAGTCTCCAATTGGCCGCTCATGATCCAAAAAAGAAGttta > 2:2209513/1‑139 (MQ=255) tcggcACGCGTGGACCTCTCGAGCTCCATACGACCGCGGATGCCTCACAAACTGGAGTCGATGTCGACGTTAGGCGCGGAGACAAGTTCTGCGGCTTTCAAGTCGCCATTGGGCAGCTCATGATCCAAAACAGAAGtttg < 2:1388234/140‑2 (MQ=255) aaGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTCTTTTTTATCCGAGACAAATTGTTTGGCGTTGTAGTGTCCATTGGGCCGCGCGTGGTCCAAAAAAGAAGtttgccccg > 1:355335/1‑134 (MQ=255) aaGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACat < 2:2680697/140‑1 (MQ=255) aaGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACat < 1:4349949/140‑1 (MQ=255) tgtACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTGTTTTTGAGGGGAGAACAGTTATGATGCTTTCGAGGCGGCATTGGGCATCTGATGATACAAAAAAGAAATTTCGACAAAAGaa > 1:4825907/1‑140 (MQ=255) tgtACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTGTGTATTATCGGAGACAATGTCTGTGGGTTTGAAGTCTCCATTGGGCAGCTGCTGATGCAAAAAAGTAGTTTCCCCATATGaa > 1:2276946/1‑140 (MQ=255) tgtACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTCTTTTTGAGGGGAGACAATTTTTTAGGGTTTGAAGTCTCCATTGGGGAGCTAATGATCCAAAAAAGAAATTTACACATATGaa > 1:3868249/1‑140 (MQ=255) tgtACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTATTTATGATCGGAGAAAATTTCTGAGGCTTTCAACTCTGCATTTTGCAGCTCATTATCCAAAAAAGAAATTTACACAAATTaa > 2:591397/1‑140 (MQ=255) tgtACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGGTGTTTATGAGCGGTGACCAGTTCTGAGGCTTTCAACTGGGCACTGGGCACCTCATTGTGCCAAATATAAGGTTCCACCTATGaa > 1:2669547/1‑140 (MQ=255) tgtACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGaa < 1:1351313/140‑1 (MQ=255) tACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGAGTTGTTGTTTATTTGCGGAGACAAATTCTTAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATACAAAAAAGAAGTTTCCACATAAGAATc > 1:3884678/1‑140 (MQ=255) atctCGACATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCATTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAACAAGAAGTTTCCACATATGAATCAtt < 1:1006813/137‑1 (MQ=255) aTGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCAtt < 1:4700022/140‑1 (MQ=255) gTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTGTTGTTTTTTTGCGGCGACAAATTGTGATGCTTTAAAGTCTCCAATTGGCAGCTCATGTTACAAAAAATAAGTTTGGACATAAGAATAATTCa > 1:3470100/1‑140 (MQ=255) gTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTATTTATGATCGGAGAAAAATTATGATGCTTTCAAGTCTCCATTGGGCAGCTCATTATACAAAAAATAACTTTCCAAAAAAGAATAATTCa > 2:2552898/1‑140 (MQ=255) gTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCGTGGTTAGGAGCGGAGACAAATTCTGAGGCTTTCAAGGATCCCTTGGGCCGCTCATGATCCAAAAAAGAAATTTACACAGATGAATCATTcc > 2:1986058/1‑139 (MQ=255) gTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCGTCTTTATGAGCGGAGACAAATTATGAGGCTTTCAAGGCTCCATTGGGGCCCGCATGATCCAAAAAAGAAGTTTCCAAAAATTAATAAATCa > 2:101198/1‑140 (MQ=255) gTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGAGTTGGTGTTTTTTAGCGGAGTCAATTTCTGAGGCTTTGAATTCTCCATTTGGCAGCTCATTATCCAAAAAAGAAGTTTCCACATAATAATCAttaa > 1:4518821/1‑138 (MQ=255) gagaTCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGtt < 1:1252995/140‑1 (MQ=255) aacAATAATATCGCTGATGCCTGACAAAATGGAGTCTATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCtt < 2:3444886/138‑1 (MQ=255) aTCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCtt < 1:2383875/140‑1 (MQ=255) aTCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTAATTATCCAAAAAAGAAGTTTCCACATATGAATAAATAAGTTAtt > 2:2393393/1‑140 (MQ=255) aTCAATAATATCGCTGATGCCTGACAAAATGGAGTCGAGTTGTTGTTTATTTGCGGAGACAATTTGTGAGGCTTTGAAGTGTACATTTGGCAGCTCATGATCCCAAAAAGAAGTTTACACAAAATAAACATTCAGTTAtt > 1:1306647/1‑140 (MQ=255) tCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTg < 1:1431373/140‑1 (MQ=255) tCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTg < 2:4814586/140‑1 (MQ=255) aataatATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGAt < 1:2861442/140‑1 (MQ=255) aataatATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGAt < 1:4009369/140‑1 (MQ=255) ataataTCGCTGATGCCTGACAAAATGGAGTCGATTTGTTGGTTATGAGCGGCGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCAAGATACAAAAAAGAAGTTTACACAAATGAAACATTGAGGTGTTGATc > 1:3631557/1‑140 (MQ=255) tCGCTGATGCCTGACAAAATGGAGTCGATTTGTTGTTTTTGAGCGGGGACCATTTGTGAGGCTTTGAAGTCTCCCATGGGCAGCTCATGATCCAAAAAAAAACTTTGCACAAATTAATCATTGAGTTCGTGTTCTTTAAt > 1:5076539/1‑140 (MQ=255) tCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAAt < 1:3675948/140‑1 (MQ=255) gCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGCCTTTCAAGTCTCCATTCGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGt < 2:278036/140‑1 (MQ=255) gCTGATGACTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGt < 2:2350003/140‑1 (MQ=255) gCTGAGGCCTGACAAAATGGAGTCGAGTTCTTCGTTATGAGCGGCGACAAGTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCGTGATCTGTAATGt < 2:356263/140‑1 (MQ=255) cTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGtc < 2:4477833/140‑1 (MQ=255) aTGCCTGACAAAATGGAGTCGATTTGGTGTTTATGAGCGGTGACAATTTCTGAGGCTTTGAAGTGTCCCTTGGGCAGCTCATGATACAAAAAAGAAGTTTCCACATATGAATGATTGAGTTGTTGATCTTTAATGtgtgc > 2:5050344/1‑136 (MQ=255) gCCTGACAAAATGGAGTCGATTTCTTCTTTTTGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCCGCTCATTATCCAGAAAAGAAGTTTACACATATTAATCATTCAGTTGTTGTTCTTTAATGTCTCCTg > 2:4783592/1‑140 (MQ=255) gCCTGACAAAATGGAGTCGATTTCTTCGTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTg > 2:4099286/1‑140 (MQ=255) ccTGACAAAATGGAGTCGATTTGGTGTTTATGAGCGGAGACAATTTCTGAGGGTTTCAAGTCTCCAATTGGGAGCGCAAGATCCAAAAAAGAAGTTTCCCCCTATGAATCATTGAGTTCTTGGTCTTTAATGTCTCCGGa > 2:3125656/1‑140 (MQ=255) aCAAAATAGAATCGATTTCTTCTTTATGAGCGGAGACAATCTCTGAGGCTTTCAGGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATATCTCCTGAAATg < 2:4580626/140‑1 (MQ=255) aaaaTGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGcc < 2:2132211/140‑1 (MQ=255) aTGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCAtt < 2:1642334/140‑1 (MQ=255) tcttctTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAAt < 2:1855268/140‑1 (MQ=255) ttcttTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAAttt < 2:3213409/140‑1 (MQ=255) ttATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCATCTCATGATCCCAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTTATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGc < 2:609663/140‑1 (MQ=255) ttATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGc < 1:1527047/140‑1 (MQ=255) ttAGGAGCGGACACAATGTCCGAGGCTTACAAGTCTCCATTTGGCAGCTCATGAACCAAAACAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAATACGCAATTTGAGc < 2:5164053/140‑1 (MQ=255) tATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCa < 1:2036409/140‑1 (MQ=255) tATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCa < 1:423447/140‑1 (MQ=255) gAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCagag > 1:2354769/1‑140 (MQ=255) gCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGAc < 1:1904287/140‑1 (MQ=255) gCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGAc < 1:3401436/140‑1 (MQ=255) gCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGAc < 2:4694721/140‑1 (MQ=255) gCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGAc < 1:4906959/140‑1 (MQ=255) gCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGAc < 1:1191116/140‑1 (MQ=255) ggAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACaa < 2:644811/140‑1 (MQ=255) ggAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACaa < 2:3272832/140‑1 (MQ=255) ggAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGAACTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACaa < 2:1184721/140‑1 (MQ=255) ggAGACAAATTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACaa < 2:4239195/140‑1 (MQ=255) tttCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTATCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTcagc < 1:4640278/140‑1 (MQ=255) ttCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTGCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTcagcc > 2:3870681/1‑140 (MQ=255) tCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTcagcca > 1:4104334/1‑140 (MQ=255) aGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCtt > 1:2776266/1‑140 (MQ=255) gaatacAAGTCTCCATTGTGAATATAATGATAAAAAAAATAAGTTTCCACATATGAATCATTCAGTTCTTGATATTTAATGTCTCCTGAAATGACATTTAAAAACTCAATTTGAGCATAGACAAGTGTCAGCCAGAttta > 2:4667159/6‑139 (MQ=255) tttCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCTTTcga < 1:244027/140‑1 (MQ=255) tttCAAGTCTCCAGTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCTTTcga < 1:909040/140‑1 (MQ=255) ttCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCTTTcgac > 1:586483/1‑140 (MQ=255) ttCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCTTTcgac > 1:4344453/1‑140 (MQ=255) ttCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCTTTcgac > 1:3166008/1‑140 (MQ=255) aGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCTTTCGACGAtt < 1:890285/140‑1 (MQ=255) tcCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAATTGTAAGCCAGCTTTCGACGATTTCCg > 2:1048028/1‑140 (MQ=255) tcCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACCCAATTTGAGCACAGACAACTGTCAGCCACCTTTCGACGAATTCCg > 2:1564636/1‑140 (MQ=255) tGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCTTTCGACGATTTCCGCCTGt > 1:1076470/1‑140 (MQ=255) | TGGGCATCGCCCATCTTATCGGCATAGTCGTCAAGCGTGTACATGTCGAGATCAATAATATCGCTGATGCCTGACAAAATGGAGTCGATTTCTTCTTTATGAGCGGAGACAATTTCTGAGGCTTTCAAGTCTCCATTGGGCAGCTCATGATCCAAAAAAGAAGTTTCCACATATGAATCATTCAGTTCTTGATCTTTAATGTCTCCTGAAATGCCATTTAAAAACGCAATTTGAGCAGAGACAAGTGTCAGCCAGCTTTCGACGATTTCCGCCTGT > NZ_CP034943/3539501‑3539776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |