| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,584,291 | G→T | 5.3% | S324S (TCG→TCT) | EO946_RS18420 → | N‑acetylneuraminate synthase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,584,291 | 0 | G | T | 5.3% | 1188.7 / 6.4 | 445 | S324S (TCG→TCT) | EO946_RS18420 | N‑acetylneuraminate synthase family protein |
| Reads supporting (aligned to +/- strand): ref base G (198/201); new base T (2/43); total (201/244) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.08e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 446 total aligned reads displayed.
TGACAGCCAACCAGAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATACCATCTGTTGAACGCTGTTTA > NZ_CP034943/3584152‑3584429 | tgACAGCCAACCAGAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCg < 2:77430/140‑1 (MQ=255) aGCCAACCAGAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCAGTAATGCCTTGACAAGCCGAGGACGCATGTCCTCAAGTAGCAACTGCTGATTTATCGTTaa > 1:3160088/1‑140 (MQ=255) ccAACCAGAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAAc > 2:2730879/1‑140 (MQ=255) aaCCAGAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACACGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCa < 1:1008098/140‑1 (MQ=255) aaCCAGAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACAACCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCa < 2:3095809/140‑1 (MQ=255) ccAGAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGc < 1:4480472/140‑1 (MQ=255) ccAGAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGc < 2:1452601/140‑1 (MQ=255) gAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCa < 1:1574603/140‑1 (MQ=255) aaTATAAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCAt > 2:124741/1‑140 (MQ=255) tataAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTa > 2:3327841/1‑140 (MQ=255) taAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTaca < 1:4275659/140‑1 (MQ=255) taAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTaca < 1:2697773/140‑1 (MQ=255) aaaaaGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACAccc > 1:4074230/1‑140 (MQ=255) aaaaaGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACAccc > 1:2150901/1‑140 (MQ=255) aTCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATaaa < 1:819199/140‑1 (MQ=255) tACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTc > 1:4626937/1‑140 (MQ=255) tGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGa > 2:2131661/1‑140 (MQ=255) tGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGa > 2:4246079/1‑140 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCTTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAAt > 1:4413815/1‑140 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGt < 2:3717542/97‑1 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATaaa < 2:2678763/128‑1 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAAt > 2:2825745/1‑140 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAAt < 2:3273296/140‑1 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAAt > 1:4548128/1‑140 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAAt > 2:4089823/1‑140 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAAt > 1:117088/1‑140 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAAt > 1:225920/1‑140 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAAt > 1:2850729/1‑140 (MQ=255) aaTAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAAt > 1:2940691/1‑140 (MQ=255) aCAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCCAGTAGCAACTGCTGATTTATCGTTACACCAGCCCATTACACCCAACGAAATAAAAAGTCTCAGACTTGAGAt > 1:3281234/1‑140 (MQ=255) aaGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTg < 2:4841895/140‑1 (MQ=255) tcTCCAAAAGATGCGGAAATGAGAATGCATGAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAACTAAAAAGTCTAAGAATTGCGATTGCa < 1:4032855/139‑1 (MQ=255) gCTCCAAAAGATGCGGAAATGAGACTGCATTAATGCCTTTACAAGCCGACGACGCATTTCCTCAAGTATCAACTGCTGATTTATCGTTAAACCAGCCCATTAAACCAAACGAAAAAAAAAGTCTAATAATTGAGATTgaa > 2:5015956/1‑138 (MQ=255) gCTCCAAAAGATGCGGAAATGAGAATGCATTAATGGCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGGTGATTTATCGTTAAACCACCCCATTACACCCAACGAAATAAAAAGTCAAAGAATTGCGATTGCa < 1:3881647/140‑1 (MQ=255) gCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAATGTCTAAGAATTGCGATTGCa > 1:2375279/1‑140 (MQ=255) gCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTg < 2:1079156/138‑1 (MQ=255) gCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCa > 1:1548382/1‑140 (MQ=255) gCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCa > 2:2508140/1‑140 (MQ=255) gCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCa > 1:3194391/1‑140 (MQ=255) gCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCa > 1:4189380/1‑140 (MQ=255) gCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCAGTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCa > 1:3438623/1‑140 (MQ=255) gCTCCAAAAGATGCGGAAATCAGAATGCATTAATGCCTTTACAATCCGAGGAATCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAATTATAAGAATTGAGATTTCa > 2:1172149/1‑140 (MQ=255) ccAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTg < 2:1792756/140‑1 (MQ=255) ccAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTg < 1:3640581/140‑1 (MQ=255) aaaaGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTAGCGTTAAACCAGCCCATTACACCCAACGTAATAAAAAGTCTATGAATTGCGATTGCAGTGat > 1:887583/1‑140 (MQ=255) aaaGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGata > 1:1875863/1‑140 (MQ=255) aGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATg < 1:3803421/140‑1 (MQ=255) gCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAgg > 1:3543755/1‑140 (MQ=255) agaATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCg > 1:4093563/1‑140 (MQ=255) tGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCa > 1:4948367/1‑69 (MQ=255) tGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCa < 2:452137/69‑1 (MQ=255) cATTAATTCCTCTACAAGCCGAGGACGCATTTCCTAAAGTAGCAAGTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACCAAATAAAAATTATAACAATTGCGTTTGCATTAATATGTATGCTAAACTCGACTCGt < 2:73697/140‑1 (MQ=255) tGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATAGACTCGTCTGcag > 2:5064338/1‑138 (MQ=255) tttACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGaaaa > 2:608993/1‑140 (MQ=255) ttACAATCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTATGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGaaaaa > 1:2093134/1‑140 (MQ=255) ttACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGaaaaa > 2:1496111/1‑140 (MQ=255) caGCCGCGGACGCATTTCCTCAAGTAGCAACTGCTGTTTTATCGTTAAACCCGCCCATGCCACCCACCGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGATAAAATCGACTCGTCTGCCGAAAAAAgcg < 1:4675674/139‑1 (MQ=255) aaGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAAcaa > 2:3938877/1‑50 (MQ=255) gCCGAGTACGCATTTCCAAAAGTAGAAATTTCTGATTTATCTTAAAACCAGCCCTTTACACCCAACTAAATAAAAAGTCTAATATTTGCTATTGAAGTGATATGTAGGATAAAATCGACTCGTCTGCCGAAAAAAGCgct < 2:4189380/140‑1 (MQ=255) gCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCgct > 2:1609920/1‑140 (MQ=255) cGAGGACGCATTTCCTCAAGTAGCACCTGATGATTTATCTTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGATTTGCTTTTGAAGTGATAGGTTGGCTAAAATCGACTCGTCTGCCGAAAAAAGCgctgc < 2:376983/140‑1 (MQ=255) cGAGCACGCATTGCCTCAAGTAGCAACGGCTGATTTATCGTTACACCCGCCCATTACACCCCACGAAATAACAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCgctgc < 2:3070657/140‑1 (MQ=255) cggccGCTTTTCCTCATTTAGAAACTGCTTTTTTATTTTTAAACACGCCCTTTACACCAAACTAAATAAAAATTATAATATTTGATTTTGCTTTTATATGTAGGATAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTc < 1:2233219/136‑1 (MQ=255) aGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTc < 2:4074230/140‑1 (MQ=255) aGGACGAATTTCCTCAATTAGAAATTGCTTATTTATCGTTAAACCAGCCAATTACACCAAACGAAATAAAAAGTCTAAGATTTGCTTTTGCTGTGATTTGTTGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTc < 1:2325693/140‑1 (MQ=255) ggACGCATTTCCTCAATTACCAACTGCTTATTTATCTTTAAACCACCCCATTACACCCAACTAAATAAAAAGTCTAAGAATTGCGTTTGCAGTTATATTTAGGATAAAATCGTCTCGTCTGCCGAAAAAAGCGCTGCTcc < 1:5142757/140‑1 (MQ=255) ggACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTcc < 2:2251291/140‑1 (MQ=255) ggACGCATTTCCTCAAGTAGAAACTGCTTATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTcc < 1:3704958/140‑1 (MQ=255) ggACGCATTTCCTAATTTAGCAAGTGCTTATTTATGTTTAAACCAGCCCATAACACCCAACTAAATAAAAAGTCTAAGAATGGCGATTGAAGTGATTTGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTcc < 1:124741/140‑1 (MQ=255) gcaCGCATTCCCTCATGTAGCAAGTGTTTATTTATCGTTAAACCCCCCCATAACACCCAACCAAATAAACACTCTAAGAATTCCTATTGCAGTTTATTGTAGGCTAAACTCGACTCGTCTGCCGAAAAAAGCGCTGCTcc < 1:2571764/138‑1 (MQ=255) cgACGCATTTCCTCAAGTAGCAACGGCTGATTAATCGTTAAACCCGCCCATTACACCCACCGAAATAAACCGTCAAAGAATTGCGATTGCAGTGATATGTAGGCTAAACTCGACTCGTCTGCCGAAAAAAGCGCTGCTcc < 1:3942905/139‑1 (MQ=255) gACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTccc > 1:4588647/1‑140 (MQ=255) gCATTTCCTCATGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAACCTCTAAGAATTGCGATTGCAGTGATATGTAGGATAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTAt < 2:4757247/140‑1 (MQ=255) gCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTAt < 2:4976052/140‑1 (MQ=255) gCATTTCCACAAGTAGAAACTGCTGATTTATCGTTAAACCAGCCCATTACACCAAACGAAATAAAAAGTATAAGAATTGCGATTGCAGTGAAATTTTGGCTAAACTCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTAt < 2:186286/140‑1 (MQ=255) gCATTTCATCAAGTAGCACCTGCTTATTTATCTATAACCCAGCCCATTACACCCAACCAAACAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCGGCTCCCTAt < 1:4205805/140‑1 (MQ=255) cATTTCCTCAATTAGAAACTGCTTTTTTATCTTTAAACCAGCCCATTACACCCACCGAAATAAAACGTCTAATAATTGCGATTGCTGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTAtt < 2:891641/140‑1 (MQ=255) aTTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATg > 2:3187334/1‑93 (MQ=255) tttCCTGAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCTTTACACCCACCGAAATAAAATGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTa < 2:3645888/140‑1 (MQ=255) tttCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTTATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTa < 2:4336009/140‑1 (MQ=255) tttCCACAAGTAGAAACTGCTTATTTATCGTTCAACCAGCCCATTACACCCAACGAAATAAAAAGTCTACGAATTGCGATGGCAGTGATATGTAGGATAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTa < 2:5177692/140‑1 (MQ=255) tttACTAAAGTATAAACTGCTTATTTATCTTTAAACCAGCCCATTACACCCAACTAAATAAAAAGTCTAAGAATTGCGTTTGCAGTTATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTa < 2:4573079/140‑1 (MQ=255) ttCCTCATGTATCATCTGCTGATTTATCGTTAATCCAGCACATTACACCCACGTTAATAATAAGTATACTAATTGCGTTTGTTGTTATTTGTATGGTAAATTCGAGTCGTCTGCAGAAAAAAGCGCTGCTCCCTATTTaa < 2:294480/140‑2 (MQ=255) ttCCTCAAGTAGCAACTGCTGATTTATCTTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGTTTGCAGTTATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTAc < 2:4624306/140‑1 (MQ=255) gacatCAATTAGCAAAGGCTGTTTTATCGTTAAACCAGCCCATTCCACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGACGTGATTTGTAGGAGAACCTCGACTCGTATGCCGAAAAAAGCGCTGCTAAATATTTAc < 2:2281638/136‑1 (MQ=255) tCCTCATGTAGCAACTGCTTATTTATCGTTAAACCAGCCCATTACACCCAACTAAATAAAAAGTCTAATAATTGCTTTTGCAGTTATATGTAGGATAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACg < 1:1496111/140‑1 (MQ=255) tCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACg > 1:1759999/1‑140 (MQ=255) ccTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACgg > 1:1681978/1‑140 (MQ=255) ccTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACCAAATAAAAAGTCTAAGAATGGCGATTGCAGTTATATGTAGGATAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACgg < 1:1436795/140‑1 (MQ=255) ccTAAAGTACCAACTGATGATTTATCGTTAAACCCCCCCATAACCCCCACCAAAATAAAAAGTCTACCAATTGCGATTCCATTGATATGTTGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACgg < 1:2007749/140‑1 (MQ=255) ctcttgTAGCACCGTCTGTTTTTTCGTTAAACCAGCCCTTTACCCCCACCGACATATAATGTCTAAGATTTGCGTTTGCTGTGATTTTTTGGCTAAAATCGAATCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGt < 2:1970482/135‑1 (MQ=255) cAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGtat < 2:2155872/140‑1 (MQ=255) gTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATAcc < 2:3526523/140‑1 (MQ=255) aaCTGCTTATTTATCGTTAAACCACCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATGGCAGTTATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATACCATCTg < 1:705385/140‑1 (MQ=255) aaCTGCTGATTTATCTTTAAACAAGCCAATTACACCCAACGAAATAAAAAGTATAAGAATTGCGATTGCAGTGATATTTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATACCATCTg < 1:4828960/140‑1 (MQ=255) ctgATTTATCGTTAACCCAGCCCATTACACCCACCGAAATAAAAAGACTACGACTTGCGATGGCAGTTATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATACCATCTGTTGaa < 1:3090908/140‑1 (MQ=255) ctgATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATACCATCTGTTGaa > 1:1210683/1‑140 (MQ=255) ctgATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATACCATCGGTTGaa > 1:3060586/1‑140 (MQ=255) aTTTATCGTTAAACCAGCCCATTACACCCAACTAAATAAAAAGTCTAATAATTGCGATTGCAGTGATATGTAGGCTAAACTCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATACCATCTGTTGAACGc < 2:296533/140‑1 (MQ=255) tATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATACCATCTGTTGAACGCTGt > 2:1391728/1‑140 (MQ=255) | TGACAGCCAACCAGAATATAAAAAAAGGAGAAATCATTACACTGAATAAAACAAGCTCCAAAAGATGCGGAAATGAGAATGCATTAATGCCTTTACAAGCCGAGGACGCATTTCCTCAAGTAGCAACTGCTGATTTATCGTTAAACCAGCCCATTACACCCAACGAAATAAAAAGTCTAAGAATTGCGATTGCAGTGATATGTAGGCTAAAATCGACTCGTCTGCCGAAAAAAGCGCTGCTCCCTATTTACGGTATACCATCTGTTGAACGCTGTTTA > NZ_CP034943/3584152‑3584429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |