| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,846,645 | C→A | 6.1% | D188Y (GAT→TAT) | dbpA ← | ATP‑dependent RNA helicase DbpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,846,645 | 0 | C | A | 6.1% | 885.0 / 14.4 | 312 | D188Y (GAT→TAT) | dbpA | ATP‑dependent RNA helicase DbpA |
| Reads supporting (aligned to +/- strand): ref base C (126/158); new base A (25/2); total (152/160) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.05e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 320 total aligned reads displayed.
ACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGGAGAGACGGTCTAAC > NZ_CP034943/3846506‑3846784 | acaTCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTTACGGCTCAATTTCTCAATAtc > 1:648649/1‑140 (MQ=255) cTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATAtcctcc > 1:3668542/1‑140 (MQ=255) cTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATAtcctcc > 1:2577267/1‑140 (MQ=255) cAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCg < 1:4108494/140‑1 (MQ=255) aGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTTATTTCAATATTCTGCGGGTTTTGCATATATTGACGGCGCAATTTCTCAATATCCTCCGGCAGCGTTg > 1:1550502/1‑140 (MQ=255) aGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTTATTTCAATATGCTTCGGGTTTTGCATATATTGACGGCTCAATTTGTCAATATGCTCCGGCAGCGTTg > 1:456804/1‑140 (MQ=255) aGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTTATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTg > 2:3385321/1‑140 (MQ=255) aGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTg > 2:906249/1‑140 (MQ=255) aCTTATTGTGTTCTCTTACTTGAATCACCGCATGTTCAATATTGTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGaa < 1:5115595/140‑1 (MQ=255) aCTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGaa < 1:3770911/140‑1 (MQ=255) ttATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGaaaa < 2:3214911/140‑1 (MQ=255) ttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGGTCAATTTATCCATATACTCCGGCAGCGTTGCCGAAAACAACAACGTCGTg > 1:147510/1‑140 (MQ=255) ttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCGTTGATTTAAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGGTGCCGAAAACAAAATAGTCGTg > 1:339920/1‑140 (MQ=255) aCTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATTCTGCGGGTTTTGCATATATTTACGGCTCAAATTCTCAATATACTCCGGCAGCGTTTCCGAAAACAACATCGTCGTgcg > 1:1203076/1‑140 (MQ=255) cTTGAATCACCGCATGTTCAATATTCGTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTTACGGCTCAATTTCTCAATATCCTCCGGCAGCGATGCCGAAAAAAACATCGTCGTgcgc > 2:2256186/1‑140 (MQ=255) ttGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGct < 1:3581427/140‑1 (MQ=255) aaTCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTg > 1:5080324/1‑140 (MQ=255) aTCACCGCATGTTCCATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGt > 2:1398859/1‑140 (MQ=255) ccGCAGGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAACACAACCTCGGCGTGCGCTCTGTCGGc > 2:3112819/1‑140 (MQ=255) cGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTAAATATTCTGCGGGTTTTGCATATATTTACGGCTCAAATTCTCAATATACTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCa > 1:2934701/1‑140 (MQ=255) gCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAg < 2:3717476/140‑1 (MQ=255) cATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGa < 1:1971138/140‑1 (MQ=255) tGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAAATTATCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATg > 1:2089666/1‑140 (MQ=255) atatTCTTTGTGGTTAGGCCGGCCGCTTTGATTTAAATATTCTGCGGGTTTTTGATATATTTACGGCTCAAATTCTAAATATCCTACGGCAGCGGTTCCGAAAACAACATCGTACTGCGCTCTGTAGGCAGATGCTTGAt > 1:3001980/1‑140 (MQ=255) atatTCTTTGTGGTTAGGCCGGCCGCTTTGATTTAAAAATTCGGCGGGTTTTTCAAAAATTTAACGCTCAAATTATAAAAATCCTACGGCAACGTTGACGAAAACAACAACGTCGTGCGCTCTGTAGGCACAAGCTTTAt > 1:5019218/1‑140 (MQ=255) atTCTTTGTGGTTAGGCCGGCCGCTTTGATTACAATATGCTGCGGGTTTTGCATATATTGACGGCTCACTTTCTCACTATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATaa < 2:5117388/140‑1 (MQ=255) ttCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAAt < 2:346659/140‑1 (MQ=255) tCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATc < 1:1001750/140‑1 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTTATTTCAAAATTCTTCGGGGTTTGCAAATATTGAACGCTCAAATTATAAATATACTCCCGCAGCCTTGCCGAAAACAAAATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATAGc > 1:2238393/1‑140 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCt < 1:1158590/130‑1 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGc < 1:264872/140‑1 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGc < 1:2346372/140‑1 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGc < 1:1602816/140‑1 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGc > 2:499829/1‑140 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATACTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCt > 2:1158590/1‑130 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTAAAAATGCTGCGGGTTTTTCAAATAATTACGGCTCAAATTATCAAAATAATCCGGCAGCGTTGCCGAAAACAAAATAGTCGTGCGCACTGTCCGCAAATGCTTGATAAACGc > 1:2464261/1‑140 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTAAAAATGCTGCGGGTTTTGCATATATTTACGGCTCAAATTATCAAAATCCTCCGGCAGCGTTTGCGAAAAAAAAAAAGTCGTTCGCTCTGTCGGCAGATTCTTGATAATCGc > 1:1818756/1‑140 (MQ=255) ttGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGcc > 2:1966063/1‑140 (MQ=255) tgtgGTTAGGCCGGCCGCTTTGATTTCAAAATTATGCGGGTTTTGCATATATTTAAGGCTCAATTTATAAATATACTACGGCAGCGTTGCCGAAAACAAAAAACTCGTGCCCTATGTCGGCAGATTCTTGATAAACGcca > 1:99462/1‑139 (MQ=255) tgtgGTTAGGCCGGCCGCTTTGATTTCAAAATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCGACGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCct > 1:4517284/1‑140 (MQ=255) aGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCACATTCTTGATAATCGCCTCTACTTg > 2:2700631/1‑140 (MQ=255) ggccgCTTTGATTTAAATATGCTGCGGGTTTTTCATATATTTACGGCTCAATTTATAAATATACTCCGGCAGCGTTTCCGAAAAAAACATAGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTTCTCGa > 1:2838841/1‑140 (MQ=255) gccgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGAt > 2:3612050/1‑140 (MQ=255) gccgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGATCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGGGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGAt < 1:1496/140‑1 (MQ=255) ccgCTTTGAGTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATg > 2:1504365/1‑140 (MQ=255) cgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCTGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTTTAGTCAGTTGCTTTATAATCTACTCTACTTGCTCGAttt < 2:135932/140‑3 (MQ=255) cgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGa < 1:4260117/140‑1 (MQ=255) cgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGa < 2:2464261/140‑1 (MQ=255) cgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGa < 1:3175323/140‑1 (MQ=255) cgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTGGCTCGATGa < 1:2217145/140‑1 (MQ=255) tGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGccc < 1:5045954/140‑1 (MQ=255) tttCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCata < 1:2717726/140‑1 (MQ=255) tCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATAtt < 2:76206/140‑1 (MQ=255) atatGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGa > 1:20149/1‑127 (MQ=255) atatGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGa > 1:3078669/1‑127 (MQ=255) tatGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGc < 2:575209/140‑1 (MQ=255) gctgcGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGc > 2:3023198/1‑137 (MQ=255) gctgcGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGc > 2:4575840/1‑137 (MQ=255) gctgcGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCAtc > 1:4881771/1‑140 (MQ=255) ctgcGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCAtct > 2:2589810/1‑140 (MQ=255) ctgcGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCAtct > 2:824399/1‑140 (MQ=255) cGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTgc > 2:2852805/1‑74 (MQ=255) cGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGc < 1:3312410/102‑1 (MQ=255) cGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCAt > 2:1058299/1‑140 (MQ=255) cGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCAt > 2:478003/1‑140 (MQ=255) gggTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATc < 1:3195963/140‑1 (MQ=255) gggTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATc < 1:3042528/140‑1 (MQ=255) ttGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCtt < 2:2934701/140‑1 (MQ=255) atatatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTtcatc < 1:1687842/140‑1 (MQ=255) atatTGACGGCTCAGCTTCTCGATATCCTGCGGAAGCGTCGCTGAAAACAGCATCGTCGTACGCTCAGTCGGCAGATGCTTGATAATCGCCTCCACCTGCTCAATGAAGCCCATATTCAGCATCTCATCCGCTTCATCaa > 2:4739730/1‑140 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt > 2:3879179/1‑140 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt < 2:5040978/140‑1 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt < 2:2788273/140‑1 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt < 2:3931301/140‑1 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt > 1:1375857/1‑140 (MQ=255) ttGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCTGCTTCATCAATGa < 1:2991977/140‑1 (MQ=255) ttGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGa < 1:1075959/140‑1 (MQ=255) ttGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGa < 2:4318761/140‑1 (MQ=255) ttGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGa < 1:1321841/140‑1 (MQ=255) cGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCaa > 1:91478/1‑140 (MQ=255) cGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGCCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCGTCATCAATGACCaa > 1:400012/1‑140 (MQ=255) ggCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCaaa < 2:1585347/140‑1 (MQ=255) ggCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCaaa < 2:147510/140‑1 (MQ=255) gCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAAt < 1:3909683/140‑1 (MQ=255) cTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATa > 2:4127297/1‑140 (MQ=255) tCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAg > 2:3309839/1‑140 (MQ=255) tCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAg > 2:1224203/1‑140 (MQ=255) tctcAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGgagaga < 1:784244/140‑1 (MQ=255) tctcAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGgagaga < 1:2803249/140‑1 (MQ=255) tctcAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGgagaga < 1:4336502/140‑1 (MQ=255) ctcAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTa > 2:2052047/1‑77 (MQ=255) ctcAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAAt < 2:3807749/131‑1 (MQ=255) ctcAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGGAGAGAc < 2:4403109/140‑1 (MQ=255) ctcAATATCCTCAGGCAGGGTTGACGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGGAGAGAc < 1:3455913/140‑1 (MQ=255) cgcAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGGGCGCTCGGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAAGAGGAGAGAc < 2:3441859/138‑1 (MQ=255) caagagcctccGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGGAGAGACgg < 1:1757317/134‑1 (MQ=255) cAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt < 1:4679989/121‑1 (MQ=255) cAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt > 2:4679989/1‑121 (MQ=255) cAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGGAGAGACgg < 2:648649/140‑1 (MQ=255) cAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGGAGAGACgg > 1:610987/1‑140 (MQ=255) | ACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACCAAATAGGAGAGACGGTCTAAC > NZ_CP034943/3846506‑3846784 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |