| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 2,387,114 | C→A | 6.8% | V338L (GTA→TTA) | EO946_RS12195 ← | acetyl‑CoA C‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,387,114 | 0 | C | A | 6.8% | 513.0 / 2.2 | 193 | V338L (GTA→TTA) | EO946_RS12195 | acetyl‑CoA C‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (87/81); new base A (20/2); total (109/84) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.93e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 193 total aligned reads displayed.
AGCTGCACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAGGAGCTTGTTAATTGCAAACCCCGGAG > NZ_CP034943/2386977‑2387251 | aGCTGCACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACtt > 2:3846683/1‑140 (MQ=255) cACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTGATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCCCCGGTTACCTTTAAtttttaa > 2:353889/1‑138 (MQ=255) cACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGGGTATTCTCGCACCGCGTGCGCCGATCGGGGGGCCGCGGGCGATCGCACCACCGGTTTCATTTACTTTTTCa > 2:656662/1‑140 (MQ=255) cACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCCCCCCTTGCGCCGCTCGGGTGGCCGCGGGCGATCGCACCACCCGTTTCCTTTAATTTTTCa > 1:3066334/1‑140 (MQ=255) cACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCCGTTACATTTACtttttaa > 2:1760978/1‑138 (MQ=255) cACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATAGGGTGGCCGAGGGCGCTCGCACCACCGGTTACATTTACTTTTTCa > 2:4001706/1‑140 (MQ=255) cACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTAAAGCACCGCTTTCGCCCAAAGGGTGGGCGAGGGCGATCGCACAACCCTTTAACTTTAAATTTTCa > 2:131438/1‑140 (MQ=255) cACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAACTGTCATGAGTATTCGCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCCCCACCGGTTGCATTTACTTTTTCa > 2:2860849/1‑140 (MQ=255) cACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAAAAAGTGTCATGCGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATGGCACCCCCGTTTACATTTACTTTTTCa > 2:2982272/1‑140 (MQ=255) cACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGGAAACAAGTGTCAAGAGTATTGTCGCACCGCTGGCGCCGATAGGGGGGCCGAGGGCGATCGCACCACCGTTTACAATTAATTTTTCa > 2:2082331/1‑140 (MQ=255) cTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTTATTTGTAAACAAGTGTGATGAGTATTATGGCACCCCGTGCGCCGCTCGGGTGGGCGCGGGCGATCGCACCACCGGTTAAATTTTATTTTTTAAGATc > 1:3308035/1‑140 (MQ=255) cTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTAGTAAACAAATGTGATGTTTATTGTCGCACCGCGTTCGCCGATCGGGTGGCCGAGGGGGATCGCACCACCCGGTTCAGTTAATTTTTTAAGAtg > 1:758368/1‑139 (MQ=255) cTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAAATCGTAAACAAGTGTCATGAGGATTCGCCCACCGCCTGCGCCGATCGGGGGGGCGAGGGCGATCGCACCACCGGGTCGATGTCCTTTTTGAAGATc > 2:794154/1‑140 (MQ=255) cTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCGTTTATTAGTAAAAAACTGTGATTAGTAATGTCGCACCGCGTGCGGCGCTGGGGTGGGCGCGGGCGGTCGCACCACCGGTTACATTTAATTTTTGAAGAtg > 1:3353723/1‑139 (MQ=255) cTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCGTTATTTCGTTAACAAGTGTCAAGAGGATTCTCGCACCCCGTGCGCCGAGCGGGTTGGCGGGGGGGGTGGCCCCCCCGGGTGGAGTTACATTTTCAAGCTc > 1:1587761/1‑140 (MQ=255) cTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCGTTAATTCGTAAACAAATGTCATGAGTATTCTCGCCCCCCGTGGGCCGATCGGGTGGCCGAGGGCGGTCGCACCACCGGTTAACTTTTCTATTTAAAGAta > 1:1468972/1‑139 (MQ=255) cAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTTATTCGTAAACAAGTGTCATGGTTATTCTGGCACCCCTGGGGCCGATCGGGTGGGCGAGGGCGATCGCACCACCGGGTTCATTTACTTTTTGAAGATAGaa > 1:4047359/1‑140 (MQ=255) aaTGGCGGCAACACCCAGTCCCCCTCCCCGTCGCGTTAATTCGTAAACCAGTGTCATGAGTATTGTCGCACCGCTTGCGCCGATCGGGGGGCCGAGGGCGCTCGCACCACCGGTTACCTTTAATTTTTCAAGATAGAAAc > 2:1787039/1‑140 (MQ=255) gcggcAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACcgac < 1:3974501/140‑1 (MQ=255) ggcAACACCCAGTCCCCCTCCCCGTCGCGTTTATTAGTAAACAAGTGTCATGGGTTTTGTCGCCCCGCGTGCGCCGCTCGGGTGGCCGCGGGGGATCGCACCACCGTTTACATTTAATTTTTGAAGATAGAAAAcgacga > 1:1218894/1‑140 (MQ=255) ggcAACACCCAGTCCCCCTCCCCGTCGCGTTTATTAGTAAACAAATTTGATTAGTTTTATGGCACCCCGTGCGGCGCTCGGGGGGGCGGGGGGGAGCGCCCCCCCGGTTTCATTTTATTTTTTAATATCGAAACccacca > 1:3746105/1‑138 (MQ=255) ccAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTa < 1:3846683/140‑1 (MQ=255) gTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACAt < 2:1675951/140‑1 (MQ=255) tCCCCCTCCCCGTCGCTTTTATTCGTTAACAATTGTGCTGAGTATTATCGCCCCGCTTGCGCCGATGGGGGGGCCGAGGGCGATCGCACCACCGTTTGGATTTAATTTTTGAAGATCGAAACCGGCGATTTTTTTAAAtt > 1:3946881/1‑139 (MQ=255) ccTCCCCGTCGCGTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACAATTACTTTTTAAAGATCGAAACCCACGATTTTTTTACATGTCaa > 2:3318845/1‑140 (MQ=255) cTCCCCGTCGCTTTAATTCGTAAAAAAGTGTCATGAGTATTATCGCACCGCTTGCGCCGATAGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTAAAGATCGAAACCGACGATTTTTTTACATGTGaaa > 2:700292/1‑140 (MQ=255) ccccGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGGCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAATATCGAAACCGACCATTTTTTTACATGTCaaaaa > 2:2809850/1‑139 (MQ=255) cccGTCGCGTTAATTCGTAAAAAACTGTCAAGAGTATTCTCGCACCGCGTGCGCCGATCGGGTGGGCGAGGGCGATCGCCCCACCGGTTACCTTTTATTTTTCAAGATCGAAACCGACGATTTTTTTTCATGGGAAaaca > 2:1496144/1‑140 (MQ=255) ccGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAaacaa < 2:2094289/140‑1 (MQ=255) ccGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAaacaa < 1:1831429/140‑1 (MQ=255) cGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAaacaac < 1:2773440/140‑1 (MQ=255) gTCGCTTTAATTCTTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGGCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAacaaca < 2:3641254/140‑1 (MQ=255) gTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAacaaca < 2:1400566/140‑1 (MQ=255) gTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAacaaca < 2:3127148/140‑1 (MQ=255) tCGCTTTTATTCGTAAAAAAATGTGATGCGTATTCTCGCACCGCTTGCGCCGATAGGGTGGCCGTGGGCCGGCGCACCCCCGTTTACATTTACTTTTTAAAGATCGCAACCGCCGAATTTTTTTAATGTCAAAAAAAAAg > 2:1212996/1‑140 (MQ=255) ttAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCa < 1:3214273/140‑1 (MQ=255) ttAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCa > 2:2392859/1‑140 (MQ=255) ttAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCa < 1:1400162/140‑1 (MQ=255) tAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCaa < 1:2971444/140‑1 (MQ=255) aaTTCGTAAACAAGTGTCATGAGTAGTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTACAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCaac < 1:3000417/140‑2 (MQ=255) cgtcaccAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGAACGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCt < 1:939916/134‑1 (MQ=255) cGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTTGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCt < 1:1043443/140‑1 (MQ=255) tAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTc > 2:3279733/1‑140 (MQ=255) aaCAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCAt < 1:675601/140‑1 (MQ=255) aCAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCAtt < 1:656662/140‑1 (MQ=255) tCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAATCAAAAGCTTAATTTAATTCa > 2:188435/1‑140 (MQ=255) aTGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCaaa < 2:1456165/140‑1 (MQ=255) aTGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCaaa < 1:2392859/140‑1 (MQ=255) aTGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCaaa < 1:3405574/140‑1 (MQ=255) aTGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACAGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCaaa < 1:1283655/140‑1 (MQ=255) aTGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACAACCGTTTACTTTTACTTTTTCATGATCGAAACCGACGATTTTTTTACATGTCATAACAACAGAAGCAAACGCTTCATTTACTTCaaa < 1:478856/140‑1 (MQ=255) tGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAAc < 1:2831292/140‑1 (MQ=255) aGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACaa > 1:1056969/1‑140 (MQ=255) tATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGt > 2:3703457/1‑140 (MQ=255) ttCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCa < 2:3353723/140‑1 (MQ=255) ttCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCa < 2:1468972/140‑1 (MQ=255) ttCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCa < 1:1911393/140‑1 (MQ=255) ttCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCa < 2:3752463/140‑1 (MQ=255) ttCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCa < 2:4247823/140‑1 (MQ=255) tctcGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCaa > 2:2768150/1‑140 (MQ=255) ctcGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAat < 2:3746105/140‑1 (MQ=255) tcGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGTAGCAAACGCGTCATTTACTTCAAACAAGTCAata > 2:3151323/1‑140 (MQ=255) tcGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAata > 2:485567/1‑140 (MQ=255) tcGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTGCATTTACTTCCAACAAGTCAata > 2:2171881/1‑140 (MQ=255) gCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTCCATTTACTTTTTCAAGATCGAAACCGACGATTGTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAGCACGTCCATATc > 2:2662850/1‑140 (MQ=255) gCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACAGACGATTTTTTTACATGTCAAAACAACAGAAGCACACGCTTCATTTACTTCAAACAAGTCAATATc > 1:1127515/1‑140 (MQ=255) cACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCt > 1:2532340/1‑140 (MQ=255) cACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCt > 2:4069397/1‑140 (MQ=255) cACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCt > 1:3874806/1‑140 (MQ=255) cACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCt > 2:3207675/1‑140 (MQ=255) ccGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACCAGTCAATATCTTg < 1:17829/140‑1 (MQ=255) ccGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTg < 2:604017/140‑1 (MQ=255) cTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACCTTTACTTTTTCAAGATCGACACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGAc > 2:3217183/1‑140 (MQ=255) cTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGAc > 1:221735/1‑140 (MQ=255) cTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGAc > 2:752403/1‑140 (MQ=255) cTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGAc > 2:302233/1‑140 (MQ=255) cTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGAc > 2:474781/1‑140 (MQ=255) cTTGCCCCGATCGGGTGTCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGTAc > 2:4207596/1‑140 (MQ=255) gATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAAc < 2:3183864/140‑1 (MQ=255) tCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCAtt < 2:915775/103‑1 (MQ=255) tCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCAtt < 2:3592244/103‑1 (MQ=255) tCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCAtt > 1:915775/1‑103 (MQ=255) tCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCAtt > 1:3592244/1‑103 (MQ=255) cGGGTGGCCGAGGGCGATCGCAACACCTTTTACATTTAATTTTTCAAGATGGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGt < 1:188435/140‑1 (MQ=255) ggTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTc < 2:1127515/140‑1 (MQ=255) gTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCa < 1:2941803/115‑1 (MQ=255) cGAGGGCGATCGCACCACCGTTGACATTTACTTTTTCAAGATCGAAACCGACGATTTGTTTACATGTCACAACATCAGAAGCAACCGCTTCAGTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCttgtgc > 1:1020352/1‑136 (MQ=255) gAGGGCGATCTCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCa < 2:2963262/140‑1 (MQ=255) gggCGCTCGCACCACCGTTTACAATTACTTTTTACACCTCGAAACCGACCATTTTTTTACATGTCAAAACAACAGAATCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAgg < 1:3781714/140‑1 (MQ=255) gggCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAgg < 2:3877827/140‑1 (MQ=255) gCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGt > 2:1371836/1‑127 (MQ=255) aTCGCACCACCGTTGACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAGGAGCtt > 1:1805907/1‑140 (MQ=255) tCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAGGAGCTTg > 1:3115021/1‑140 (MQ=255) tCGAACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTCGGACGGTTAAACCGTTCTTTTTCAGGAGCTTg > 2:416332/1‑140 (MQ=255) tgTTTTCATTTATTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACATCAGAAGCAAAAGCTTCATTTACTTCAAACAAGTCAATATATTGGTCGGTTAAACCGTTCTTTTTCAGGAGCTTGTTAATTGCa < 2:2863128/139‑1 (MQ=255) cGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAGGAGCTTGTTAATTGCa < 1:981085/140‑1 (MQ=255) aTTTACTTTTTCAATATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTACATTTTCTTCAAACAAGTGAATATCTTGGACGGTTAAACCGTTCTTTTTCAGGTGCTTGGTAATTTCAAACCCCg > 1:170169/1‑140 (MQ=255) ttACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAGGAGCTTGTTAATTGCAAACCCCGGa > 1:1520194/1‑140 (MQ=255) tACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGCAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAGGAGCTTGTTAATTGCAAACCCCGGAg < 2:2502708/140‑1 (MQ=255) tACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAGGAGCTTGTTAATTGCAAACCCCGGAg < 2:3874806/140‑1 (MQ=255) | AGCTGCACCGCTGCAAATGGCGGCAACACCCAGTCCCCCTCCCCGTCGCTTTAATTCGTAAACAAGTGTCATGAGTATTCTCGCACCGCTTGCGCCGATCGGGTGGCCGAGGGCGATCGCACCACCGTTTACATTTACTTTTTCAAGATCGAAACCGACGATTTTTTTACATGTCAAAACAACAGAAGCAAACGCTTCATTTACTTCAAACAAGTCAATATCTTGGACGGTTAAACCGTTCTTTTTCAGGAGCTTGTTAATTGCAAACCCCGGAG > NZ_CP034943/2386977‑2387251 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |