| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 595,203 | 0 | C | A | 28.4% | 154.4 / 20.6 | 88 | T30K (ACG→AAG) | EO946_RS03130 | MMPL family transporter |
| Reads supporting (aligned to +/- strand): ref base C (20/43); new base A (25/0); total (45/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.26e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATATTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTAGATCACGCTTTGAA > NZ_CP034943/595068‑595338 | atatTCACCATTCTAAAAAGCACATTTAAAGGCGGAGAGTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCCGCGGTTAGATTAGCAGTTACCGTCGTGTTGTGGTTGGTTTGTCCGAACTTATCgggg > 1:1778006/1‑138 (MQ=255)atatTCACCATTCTAAAAAGCACATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTGTCCGCACTTAACGGAg > 1:1097871/1‑140 (MQ=255)atatTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAg < 2:1417900/140‑1 (MQ=255)atatTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAg < 2:895150/140‑1 (MQ=255)atatTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAg > 1:1417900/1‑140 (MQ=255)atatTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTGTTTAGTTTTTTTTATACGAAATTAAAGGAg > 1:1475395/1‑140 (MQ=255) atTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTTTTTTGTTCGAACTTAAAGGAGCt > 2:1710769/1‑140 (MQ=255) atTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTTTTTTCTCCGAACTTAACCGAGCt > 1:1596281/1‑140 (MQ=255) atTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTACGAACATAAAGGAGCt > 2:856256/1‑140 (MQ=255) atTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTGTTTAGTTTTTTTTATCCGAACTTAACGGAGCt > 2:1533395/1‑140 (MQ=255) atTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTGTTGAGTTTTTTTTATGCGAAATTAAAGGAGcg > 2:760968/1‑139 (MQ=255) atTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTGTGTGGTTTGGTTTGTGCGAACTTATAGGAGCt > 1:1106922/1‑140 (MQ=255) cACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGc < 2:2074351/140‑1 (MQ=255) cACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGc < 1:2000673/140‑1 (MQ=255) aCCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTATCCGAAATTAAAGGAGCTTGcc > 2:943097/1‑140 (MQ=255) cATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACGTAAAGGAGCTGGccca > 1:968403/1‑138 (MQ=255) ttCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAAAGGAGCTGGCCaaac > 2:95380/1‑138 (MQ=255) tAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCaaa < 1:425136/140‑1 (MQ=255) aGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAgggg < 1:1291030/140‑1 (MQ=255) aGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAgggg < 1:1720722/140‑1 (MQ=255) aGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAgggg < 1:847799/140‑1 (MQ=255) aGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAgggg < 1:605813/140‑1 (MQ=255) aGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAgggg < 1:131297/140‑1 (MQ=255) gCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGc < 1:161527/140‑1 (MQ=255) gCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGc < 2:133864/140‑1 (MQ=255) gCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGc < 2:704081/140‑1 (MQ=255) gCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGc < 2:84713/140‑1 (MQ=255) cAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTTTTTTCTCCGAAATTAACGGAGCTGGCCAATCAAAAGGGGCa > 2:737062/1‑140 (MQ=255) tttAAAGGAGGAGATTCTGCAGAATGAGAGCATTCATCAAATTCAAGTGGGAAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGcc < 1:430026/140‑1 (MQ=255) tttAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGcc < 1:1164312/140‑1 (MQ=255) tttAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGACAATCAAAAGGGGCAGGcc < 2:782007/140‑1 (MQ=255) gaggagATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTc < 1:1623667/140‑1 (MQ=255) ttCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGa < 2:1711915/140‑1 (MQ=255) cTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATg < 1:886873/140‑1 (MQ=255) cTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATg < 1:715014/140‑1 (MQ=255) tGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGGGTTTGTTTTATCCGAACTTAAAGGATCTGGCCAATCAAAAGGGGCAGGCCCACCTTCCTGCAGATGCTGTTTCa > 2:989269/1‑140 (MQ=255) gagCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTGTTTATTTTTTTTTAAACGAAATTAACAGATCTGGGCAATCAAAAGGGGCAAGCCCACCATCCAGCAAATGATGTTTCAGaa > 1:336315/1‑140 (MQ=255) gagCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTGTTGAGTTTGTTTTGTCCCAAATTAAAAGATCTGGGCAATCAAAAGGGGCCGGACCAGCTTCAGGCGGATTCTTTTTAAGaa > 1:242690/1‑140 (MQ=255) gCAATCATCAAATTCCAGTGGGCAATTGCAGCGGGTCTATTAGCACTTACCGTCGTTTTGAGTTTTTTTTCTGCGAACTTAAAGGACCGTGCCAATCAAAATGGGCAGGCCCACCGTGCGGCAGATGCTGTTTCAGaacg > 2:661026/1‑138 (MQ=255) gCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTTAGTTTGTTTTCTCCGAACTTAAAGGAGCTGGCCAAAAAAAAGGGGCAGGCCCAGCTTCCTGCACAATCTGTTTAACaaac > 2:1672340/1‑139 (MQ=255) gCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAag > 2:1456108/1‑140 (MQ=255) aaaTTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGc < 1:152270/140‑1 (MQ=255) ggCAATTGCAGCGGTTATATTAGCACTTACCGTCGTGTTGTGTTTGTTTTTTACGAACGTAAAGGAGCGGGCCCATCAAAAAGGGGAGGCCCACCATCCAGCCCATGCTGTTTGAGAAAGAGCAAAATCCAAATTaaaaa > 1:52033/1‑139 (MQ=255) aaTTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAg < 1:253239/140‑1 (MQ=255) cAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGga < 2:354489/140‑1 (MQ=255) cGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGagaa < 1:1710769/140‑1 (MQ=255) gTTATATTAGCACTTACCGTCGTTTTGAGTTTTTTTTCTACGAACTTAACGGAGCTGGCCAATAAAAAGGGGCAGGCCCAGCTTCCTGCAGATTCTGTTTCAGAAACAGCAAATGCCATTTTAAAAAAAGCGGGagaaga > 2:389778/1‑140 (MQ=255) gTTATATTAGCACTTACCGTCGTTTTGAGTTTTTTTTATGCGAACTTAAAGGAGCTGGCCAAAAAAAAGGGGCAGGCCCACCTTCCGGCAGCTTGTGTTTTGGAAATAGAAAAAGCCAATTTAAAAAAAGCGGGcgaaga > 1:1631871/1‑140 (MQ=255) tAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAACAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACaataat < 1:1267280/140‑1 (MQ=255) tAGCACTTACCGTCGTTTTGAGTTTGTTGTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACaataat < 2:826737/140‑1 (MQ=255) tAGCACGTACCGTCGTTTTGCGTTTGTTTTCTCCGAACTTACCGGAGCTGGCCAAGCAAAAGGGCCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAAGGCCATTTTAAAACCAGCGGGAGAAGACaataat < 2:1796628/140‑1 (MQ=255) aGCACTTACCGTCGTTTTGAGTTTGTTTTATCCGAACGTAAACGAGCTGGCCCAACAAAACGGGCAGGCCCCCCCGACAGCCCCTGCTGGTTCAGAAAGAGCAAATGCCAATTTAAAACAAGCGGGCGAAGACaagactg > 1:899845/1‑135 (MQ=255) aGCACTTACCGTCGTGTTGGGTTTGTTTTGTGCGAACTTAACGGAGCTGGCCCATCAAAATGGGCCGGCCCACCGTCCGGCAGGAGCTGTTTCAGAAATAGCAAAAGCCCTTTTAAAAAAAACGGGTGAAGAAAAAAAtt > 1:1478419/1‑140 (MQ=255) gCACTTACCGTCGTGTTGAGTTTTTTTTGTCCCCACTTAACGGAGCTGGCCAAACAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCACAAAGAGCCAATGCCATTTTAAAAAAAGCGGGAGAAGACAATAAtta > 2:562309/1‑139 (MQ=255) cACTTACCGTCGTGTTGAGTTTGTTTTCTCCGAACTTAACCGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCg > 2:1931809/1‑140 (MQ=255) aCTTACCGTCGTTTTGAGTTTTTTTTGTCCGAAATTAAAGGAGCTGGGCAATCAAAAGGGGCAGGCCCAGCGTGCTGCCGATGCTGTTTCAGAAAGATCAAATGCCATTTTAAAACAAACGGGAGAAGAAAATAATTAGa > 2:50459/1‑140 (MQ=255) aCTTACCGTCGTTTTGAGTTTTTTTTCTCCGAACTTAAAGGAGCTGGCCAATCAAAAGGGGCAGGCCCACCTTACTGCAGATGCTGTTTAAGAAAGATCAAAAGCCAATTTAAAACAAGCGGGAGAAGACAAAAATTAGa > 2:582555/1‑140 (MQ=255) aCTTACCGTCGTTTTGAGTTTGTTTTATCCGAACTTAAACGATCTGGGCAATCAAAATGGGCCCGCCCACCATACTGAAGATTCTGTTTCAAAAAGAACAAAAAGCAATTTAAAAAAACAGGGAGAACACAAAAAttaca > 2:1292722/1‑137 (MQ=255) aCTTACCGTCGTTTTGAGTTTGTTTTATCCGAAATTAAAGGAGCTGGCCCAACAAAAGGGGCAGGCCCAGCTTCCTGCACATGCTGTTTCAGAAAGAGCAAAAGCCATTTTAAAAAAAACGGGAGAAGACAATAATTCGa > 2:578607/1‑140 (MQ=255) aCTTACCGTCGTGTTGAGTTTGTTTTCTCCCAACTTAAAGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTACTGCAGAATCTTTTTCAGAAACAGCAAAAGCCCATTTAAAAAAAGCGGGAGAAGACaataaataga > 2:1470478/1‑135 (MQ=255) cTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGGGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGAt < 2:1790843/140‑1 (MQ=255) cTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGAt < 2:137576/140‑1 (MQ=255) cTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGAt < 1:184569/140‑1 (MQ=255) tACCGTCGTTTTGTTTTTGTTTTCTCCGAACTTAAAGGAGCGGGGCAATAAAAAGGGGCCGGCCCAGCTTCCGGCCGATGCTGGTTAAGAAAGTGCACAAGCCATTTTAAAAAAAGCGGGAGAAAAACATAAATCGATCa > 2:1390141/1‑140 (MQ=255) aCCGTCGTTTTGGGTTTTTTTTGTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCCGGCCCAGCTTCCGGCAGATTCTGTTTCAGAAAAAGCCAATGGCATTTTAAAACAAGCGGGAGAAGACAATAATTGGATCAg > 2:293100/1‑140 (MQ=255) aCCGTCGTTTTGAGTTTTTTTTGTCCGAACTTAAACGAGCTGGCCAATAAAAAGGGGCCGGCCCAGCTTACTGCAGATGCTGTTTAAGAAAGAGCAAATGCCATTTTAAAAAAAGCCGGAGAAGAAAATAATTCTATCaa > 2:1104286/1‑139 (MQ=255) aCCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCCATCAAAAGGGGCAGGCCCAGCTTCCGGCAGATGCTGTTTCAGAAAGAGCCAATGCTATTTTAAAACAAGCGGGCGAAGACAATAATTCGATCAg > 2:1831141/1‑140 (MQ=255) aCCGTCGTTTTGAGTTTGTTTTCTCCGAACATAAAGGAGCTGGCCAATAAAAAGGGGCAGGCCCAGCTTCCGGCAGATGCTGTTTCAGAAAGAGCCAATGCCATTTTAAAACAACCGGGAGAAGACAATAAATAGATCac > 2:763690/1‑139 (MQ=255) aCCGTCGTGTTGAGTTTTTTTTCTCCGAACTTAAAGGATCTGGGCCATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGATCCAATGCCATTTTAAAAAAAACGGGAGAAGACAATAATTCGATCAg > 2:1338316/1‑140 (MQ=255) aCCGTCGTGTTGAGTTTGTTTTCTCCGCACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGGTTCAGAAAGAGCAAATGGCATTTTAAAACAAGGGGGAGAAGACAATAATTCGATCAg > 2:1384788/1‑140 (MQ=255) aCCGTCGTGGTGAGTTTGTTTTCTCCGAACTTAACCGAGCGGGCCCATCAAAATGGGCCGGCCCAGCTGCCTGCCGATGCTGTTTCAGAAAGAGCAAATGCCAATTTAAAAAAACCGGGAGAAGACAAAAAATCGATCAg > 2:98024/1‑140 (MQ=255) gtcgtTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTAt < 1:1548946/140‑1 (MQ=255) tcgtTTTGTGTTTTTTTTGTCCGAACTTAAAGGGGCTGGGCAATCAAAAGGGGCAGGCCCAGCTTGCTTCAGATGGTGTTTCAGAAAGAGCCAAAGCCATTTTAAAAAAAACGGGAGAAGAAAATAATTAGATAAGTATc > 2:1726742/1‑140 (MQ=255) tttGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCt < 2:12941/140‑1 (MQ=255) tttGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCt < 2:1966979/140‑1 (MQ=255) gttGAGTTTGTTTTCTCCGAACATAACCGACCAGGCCAAAAAAAAAGGGCACGCCCCCCATACAGCAGAAGCTTTTTGATAAAGAGCAAATGCCATTTTAAAAAAAGAGGGAGAAGAAAAAAAATCGATCAGTATCGtat > 2:351008/2‑138 (MQ=255) gtttgtttTCTCCGAACTTAACGGAGCTGGCCAATCAACAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACa < 1:2083455/140‑1 (MQ=255) gtttgtttTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACa < 2:1989491/140‑1 (MQ=255) gtttgtttTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACa < 1:943097/140‑1 (MQ=255) tgtttTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTa > 1:271794/1‑140 (MQ=255) tgtttTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTGTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGACGACAATAATTCGATCAGTATCGTCTTTACAttc > 1:911788/1‑139 (MQ=255) gtttTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTAg > 1:108019/1‑140 (MQ=255) ttCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTAGATc < 2:968403/140‑1 (MQ=255) ttAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTAGATCACGCTTTgaa < 1:1470478/140‑1 (MQ=255) ttAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTAGATCACGCTTTgaa < 1:1292722/140‑1 (MQ=255) ttAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTAGATCACGCTTTgaa < 1:50459/140‑1 (MQ=255) ttAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTAGATCACGCTTTgaa < 1:578607/140‑1 (MQ=255) ttAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTAGATCACGCTTTgaa < 1:582555/140‑1 (MQ=255) | ATATTCACCATTCTAAAAAGCAAATTTAAAGGAGGAGATTCTGCAGAATGAGAGCAATCATCAAATTCAAGTGGGCAATTGCAGCGGTTATATTAGCACTTACCGTCGTTTTGAGTTTGTTTTCTCCGAACTTAACGGAGCTGGCCAATCAAAAGGGGCAGGCCCAGCTTCCTGCAGATGCTGTTTCAGAAAGAGCAAATGCCATTTTAAAACAAGCGGGAGAAGACAATAATTCGATCAGTATCGTCTTTACATTAGATCACGCTTTGAA > NZ_CP034943/595068‑595338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |