| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 1536008 | 449 (1.000) | 5 (0.010) +AATAA |
3/238 | NT | 1.1% | intergenic (+282/‑38) | EO946_RS08025/rsmD | YlbG family protein/16S rRNA (guanine(966)‑N(2))‑methyltransferase RsmD |
| ? | NZ_CP034943 | 1536009 = | 450 (1.000) | intergenic (+283/‑37) | EO946_RS08025/rsmD | YlbG family protein/16S rRNA (guanine(966)‑N(2))‑methyltransferase RsmD | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGATGCTGTTGCTTATAGTATGGACAAGGATCAGTCTGCCTATACACCTGTTTATCAAGATTAGCGTTCATTGTTTGAAAGAATGCTTTATGTTAAGATAGGATTGATTTTTTTCTATGTACATAGCGGCGTCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/1535870‑1536008‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGAAACAAAATAGCTTTTAGAAAAAGTGGTGTGGAACATGAGAGTAATTTCTGGATCAAAAAAAGGCCGTTCACTAAAGGCTGT‑GCCGGG > NZ_CP034943/1536009‑1536098 ||||| AGATGCTGTTGCTTATAGTATGGACAAGGATCAGTCTGCCTATACACCTGTTTATCAAGATTAGCGTTCATTGTTTGAAAGAATGCTTTATGTTAAGATAGGATTGATTTTTTTCTATGTACATAGCGGCGTCTGGCCGA < 1:5539278/140‑1AGATGCTGTTGCTTATAGTATGGACAAGGATCAGTCTGCCTATACACCTGTTTATCAAGATTAGCGTTCATTGTTTGAAAGAATGCTTTATGTTAAGATAGGATTGATTTTTTTCTATGTACATAGCGGCGTCTGGCCGA > 1:6204670/1‑140AGATGCTGTTGCTTATAGTATGGACAAGGATCAGTCTGCCTATACACCTGTTTATCAAGATTAGCGTTCATTGTTTGAAAGAATGCTTTATGTTAAGATAGGATTGATTTTTTTCTATGTACATAGCGGCGTCTGGCCGA < 1:6343536/140‑1AGATGCTGTTGCTTATAGTATGGACAAGGATCAGTCTGCCTATACACCTGTTTATCAAGATTAGCGTTCATTGTTTGAAAGAATGCTTTATGTTAAGATAGGATTGATTTTTTTCTATGTACATAGCGGCGTCTGGCCGA > 2:4161074/1‑140AGATGCTGTTGCTTATAGTATGGACAAGGATCAGTCTGCCTATACACCTGTTTATCAAGATTAGCGTTCATTGTTTGAAAGAATGCTTTATGTTAAGATAGGATTGATTTTTTTCTATGTACATAGCGGCGTCTGGCCGA > 2:6007115/1‑140 TTAGCGTTCATTGTTTGGAAGAATGCTTTATGTTAAGATAGGATTGATTTTTTTCTATGTACATAGCGGCGTCCGGCCGAATAAAGAAACAAAATAGCTTTTAGAAAAAGTGGTGTGGAACATGAGAGTAATTTCTGGAT < 1:7452867/140‑1 AGAATGCTTTATGTTAAGATAGGATTGATTTTTGTCTATGTACATAGCGGCGTCCGGCCGAATAAAGAAACAAAATAGCTTTTAGAAAAAGTGGTGTGGAACATGAGAGTAATTTCTGGATCAAAAAAAGGCCGTTCACT < 2:4591707/140‑1 AGATGGGATTGATTTTTTTCTATGTACATAGCGGCGTCCGGCCGAATAAAGAAACAAAATAGCTTTTAGAAAAAGTGGTGTGGAACATGAGAGTAATTTCTGGATCAAAAAAAGGCCGTTCACTAAAGGCTGTAGCCGGa > 1:7348048/1‑139 AGATAGGATTGATTTTTTTCTATGTACATAGCTGCGTCCGGCCGAATAAAGAAACAAAATAGCTTTTAGAAAAAGTGGTGTGGAACATGAGAGTAATTTCTTGATCAAAAAAAGGACTTTCAATAAAGGCTGTAGCCGGa > 1:5453313/1‑139 AGATAGGATTGATTTTTTTCTATGTACATAGCGGCGTCCGGCCGAATAAAGAAACAAAATAGCTTTTAGAAAAAGTGGTGTGGAACATGAGAGTAATTTCTGGATCAAAAAAAGGCCGTTCACTAAAGGCTGTAGCCGGa > 1:5556781/1‑139 ||||| AGATGCTGTTGCTTATAGTATGGACAAGGATCAGTCTGCCTATACACCTGTTTATCAAGATTAGCGTTCATTGTTTGAAAGAATGCTTTATGTTAAGATAGGATTGATTTTTTTCTATGTACATAGCGGCGTCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/1535870‑1536008‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGAAACAAAATAGCTTTTAGAAAAAGTGGTGTGGAACATGAGAGTAATTTCTGGATCAAAAAAAGGCCGTTCACTAAAGGCTGT‑GCCGGG > NZ_CP034943/1536009‑1536098 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |