| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,446,970 | G→T | 20.8% | Q206K (CAA→AAA) | degU ← | two‑component system response regulator DegU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,446,970 | 0 | G | T | 20.8% | 847.5 / 90.6 | 467 | Q206K (CAA→AAA) | degU | two‑component system response regulator DegU |
| Reads supporting (aligned to +/- strand): ref base G (132/224); new base T (106/3); total (240/227) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.86e-33 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 477 total aligned reads displayed.
CTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCG > NZ_CP034943/3446831‑3447108 | tATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGc > 2:3015694/1‑140 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCa < 1:3933109/140‑1 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCGTGCGTCCGGTCGTTTACATTCATTTTTTGCa < 2:1720462/140‑1 (MQ=255) ttGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTCaa > 2:5002596/1‑140 (MQ=255) tGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTAGTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCaaa < 2:623613/140‑1 (MQ=255) tGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCACTAAAAGGCAATTCTATTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCaaa < 2:4129622/140‑1 (MQ=255) aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAatat < 1:7242858/140‑1 (MQ=255) gggAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATAtt < 2:5393862/140‑1 (MQ=255) gggAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTGCAAAATAtt > 2:269545/1‑140 (MQ=255) gAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCACGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTGTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAAATCATTTTTTGCAAAAAATTGc > 2:73647/1‑140 (MQ=255) gAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGc > 2:2213655/1‑140 (MQ=255) aCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTca > 1:4830709/1‑140 (MQ=255) ggCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTcaca < 1:7310709/140‑1 (MQ=255) gCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGt > 2:2813218/1‑140 (MQ=255) ccTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTTCTCACATGGtt > 1:6710183/1‑140 (MQ=255) aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 1:2474025/140‑1 (MQ=255) gACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGGTCACATGGTTTTTCACGGtt > 2:6091873/1‑140 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 1:3261431/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 2:4320906/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCGAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGTTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 2:4427726/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:4221637/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:6540003/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTAAATTTTTTCAAAAAATTTCTCACATGGTTTTTCAACGTTTTATCACTGATAAACAATGa > 1:7138564/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTGCTGACATGGTTTTTCACGGTTTTATCACTGATAAACAATGAt > 2:4741930/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAt > 2:1440144/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACAAGGTTTTTCAAGCTTTTCTCACTGATAAACAATTAt > 2:5340947/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTCAAAATATTGCTCACATGGATTTTAACGGTTTTATAACTTATAAACAATGAt > 2:5487660/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTTCAAAATATTTCTCACAAGGTTTTTAACGGTTTTCTCACTGATAAACAAAGAt > 1:7664870/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACAATCATTTTTTTCAAAATATTTCTCACAAGGTTTTTCACGGTTTTATCACTGATAAACAATTAt > 1:1490531/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAAATTAATTTTTTTCAAAATATTTCTCAAAAGGTTTTTAACGGTTTTATAAATTATaaaaaaatat > 1:2070161/1‑136 (MQ=255) gTCTCTTATTATACTATCTCATATCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACAATCATTTTTTGCAAAATATTGCGCACATGGTTTTTCACGGTTTTATCACTGATAAACAATTAt > 2:3280549/1‑140 (MQ=255) ataCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATAc < 1:589698/140‑1 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCAATTTTTGCAAAATATTGCTCACATGGTTTTTCACCGTTTTCTCACTGATAAAAAATGATTCAACAAAAcc > 1:4676572/1‑140 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTAAATTTTTTCAAAATATTTCTCACATTGTTTTTAAAAGTTTTATAACTTATAAAAAAATATTAACCAAAAcc > 1:7013590/1‑140 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTAAATTTTTGAAAAAAATTTCTAAAATTGTTTTTAAAGGTTTTATAACTTATAAAAAAATAATCACCaaaaac > 1:103021/1‑136 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGAACACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTAAAAATAATTCTCACAGGGTTTTTCACAGTTTTATCACTGATACACAAAGATTCACCAATAcc > 2:2346276/1‑140 (MQ=255) aCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAAATCAAATTTTGCAAAAAAATGCTCACCAGGTTTTTAAAGGTTTTATCACAGAAAAAAAAAGATTCACAAAAAcac > 2:1951517/1‑138 (MQ=255) cTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTTATCACAATGTTTTTCACGGTTTTATCACTGATAAAAAAATATTCACCAAAAAcgc > 2:6856818/1‑140 (MQ=255) cTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCAAGGTTTTCTCACATAAAAACAATGAATCAACAATACcgc > 2:5236908/1‑140 (MQ=255) tATCTCATGTCTACCAAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACcgcg < 2:1814449/140‑1 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCATTCATTTTTTTCAAAATATTGCTACCATGGTTTTTCAAGGTTTTCTCACTGATAAACCCTGATTCACCAATAACGCgg > 2:205664/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCAATAATTTTTTTCAAAAAATTTATCAAATTGTTTTTAACGGTTTTATCACTTATAAAAAAATATTAACAAATAACGCgg > 1:1706861/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCAATAAATTTTTTCAAAATATTTGTCAAAAGGTTTTTAACGGTGTTATCACTGATAAACAATTATTCACCAATAACCCgg > 1:3646278/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTAAAAATATTGCTCACAAGGTTTTTAAAGGTTTTCTCACTGATAAACAATTATTCACCAATAACGCgg > 2:4943049/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCAAATGGTTTTTCACCGTTTTCTCACTGATAAACAATGATTAACCCAAAcccccg > 2:912209/1‑136 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCAATTTTTTCAAAAAATTTCTAAAATGGTTTTTCACGGTTTTATCACAGATAAACAAAGATTCAACAAAACCCCgg > 1:1204153/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTCAAAATATTTCTCACATGGTTTTTAACGGTTTTGTGACATATAAACAATGATTAAACAAAAACGCgg > 1:5564833/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTGGAAAATATTTCACACATGGTTTTTCACGGTTTTGTGACAGATAAACAATGATTCACCACAAACGCgg > 1:2253149/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTGCAAAATAATGAACACATGGTTTTTCAAGGTTTTCTCACTGATAAACAAAGATTAAACAATAACCCgg > 2:7743888/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAAATCATTTTTTTGAAAAAATTGCTCACATGGTTTTTAAAGGTTTTTTCACTTATAAAAAATAATTCAACAATAcaccgg > 1:462195/1‑135 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACCTTCAATTTTTGGAAAAAATTGCTCACAAGGTTTTTAACGGGTTTATCACAGATAAACAAAGATTCACCCAAAACGCgg > 1:960003/1‑140 (MQ=255) aTCACATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACCTGGGTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCgg > 2:7026670/1‑140 (MQ=255) tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCa < 1:3174932/74‑1 (MQ=255) tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTAAAAATATTTCTAAAATGTTTTTTAAAGGTTTTATCACTGATAAAAAAAGATTAAAAAAAACCGCGGt > 2:6569758/1‑140 (MQ=255) ctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTAATTTTTTTAAAAATATTTCTCACATGGTTTTTCACCGTTTTATGCCTGATAAAAAAATATTCAACAATACCCCGGtt > 1:5069523/1‑140 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTcaca < 1:7355994/83‑1 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTAATTTTTTTAAAAATATTTCTCACATTGTTTTTAAAGGTTTTATCACTTATAAACAATTATTCACCAATACCGCGGTTGCtt > 2:6749905/1‑140 (MQ=255) cTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCAATTTTTGACAAAAATTGCTCACATGGTTTTTCACGCTTATATCACTGATAAACAATTAATAAACAATAACGCGCTTGCtttat > 2:5917371/1‑138 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAAATCATTTTTTGCAAAATATTTCTCACATTGTTTTTGACGGTTTTATAAAAGATAAACAAATATTACACAATAACCCGGTTGCTTTTTca > 2:4516636/1‑139 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTTCATTAATTTTTTTCAAAAAATTTCTCACAAGGTTTTTCACGGTTTTGTCACTGATAAACAAATATTAACCAAAACCCCGGTTGGttttttc > 1:3558299/1‑138 (MQ=255) gCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTGAAAAAATTGCTCACATTGTTTTTCACGGTTTTTTCACTGAGAAAAACATATTCACCAAAACCGCGGGTGCTTTTTGCGGCTg > 1:6346627/1‑140 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:7422338/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:1899743/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:7257826/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGc < 1:3015694/140‑1 (MQ=255) ttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCAt < 1:2545426/140‑1 (MQ=255) tGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgc > 2:5624356/1‑140 (MQ=255) cGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGGTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCCAAACCGCGGTTGCGTTTTCCGGATGCAACCATCAtcagc > 2:3938907/1‑140 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTGAAAATATTGCTCACATGGTTTTTCACGGTTTTGTCACTGATAAAAAATGATTGAACAAAACCGCGGTTGCTTTTTGCGTCTGCAAGCATCGgcagca > 1:5365061/1‑140 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATAATGCTCACATTGTTTTTCAAGGTTTTGTCACTGATAAACAATGATTAACCAAAACCGCGGTTTCTTTTTGCGTGTGCAAGCATATggagca > 1:5691148/1‑140 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:3346684/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:6101005/140‑1 (MQ=255) aCCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATTATTCTCCAATACCGCGGTTTGTTTTTCCGTCTGCAAGCATCTGCAGCAc > 2:4651527/1‑140 (MQ=255) cacaACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 2:7451912/140‑1 (MQ=255) ccaCGGCGTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTca < 2:4829608/138‑1 (MQ=255) cTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTTCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTACGGCTGCAAGCATCTGCAGCACTTCACATTcc > 2:4638775/1‑140 (MQ=255) gCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgc < 1:6003639/140‑1 (MQ=255) cGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgcc < 2:3608948/140‑1 (MQ=255) cGGTCGTTTACATTCATTTTTTGCAAAATAATGCTCACATTGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCCGTTGCTTTTTCCGTCTGCAAGCATCAGCAGCACTTCAAATTACCGCCGAGt > 2:1257418/1‑140 (MQ=255) ggTCGTTTACATTCAATTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGtt < 2:6019440/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGGTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCTCCAATACCGCGGGTGCTTTTTCCGTATGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:5133648/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:3752368/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:1778024/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:2739550/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTaaa < 1:1348285/140‑1 (MQ=255) agTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:7756366/139‑1 (MQ=255) gTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTGTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaaa < 1:4357565/140‑1 (MQ=255) tttACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 2:2452666/140‑1 (MQ=255) attcattTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTa < 2:7419477/140‑1 (MQ=255) tttGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTg < 2:7138564/140‑1 (MQ=255) tttGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTg < 1:549258/140‑1 (MQ=255) tGCAAAATATTGCTCACTTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:5715890/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:5240717/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:6432107/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:684549/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:2865579/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:1138612/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg > 2:757903/1‑140 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:4113095/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTGTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:5809197/140‑1 (MQ=255) | CTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCG > NZ_CP034943/3446831‑3447108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |