| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,846,624 | G→T | 6.7% | Q195K (CAA→AAA) | dbpA ← | ATP‑dependent RNA helicase DbpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,846,624 | 0 | G | T | 6.7% | 1160.0 / 15.4 | 427 | Q195K (CAA→AAA) | dbpA | ATP‑dependent RNA helicase DbpA |
| Reads supporting (aligned to +/- strand): ref base G (169/214); new base T (42/2); total (211/216) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.78e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 436 total aligned reads displayed.
TCGGGATTCTCCGTCATCAGCACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACC > NZ_CP034943/3846485‑3846763 | tCGGGATTCTCCGTCATCAGCACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTg > 1:3878200/1‑140 (MQ=255)tCGGGATTCTCCGTCATCAGCACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCGTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCCTATATTg > 2:2925213/1‑140 (MQ=255) tcCGTCATCAGCACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCaa < 1:1730346/140‑1 (MQ=255) ccGTCATCAGCACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAAt > 2:5011299/1‑140 (MQ=255) cGTCATCAGCACATCTTTCAGCAAAGAAAACTTATTCTATTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAAtt < 2:5371700/140‑1 (MQ=255) gTCATCAGCACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAAttt > 1:2738967/1‑140 (MQ=255) catcaGCACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTtct > 1:5580526/1‑140 (MQ=255) cTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATAtcctcc > 2:4270466/1‑140 (MQ=255) cAAAGAAAACTTAGTCTCTTCGCTTACTTGAATCACCGCATGTTCAATATTATTTGTGGTTAGGCCTGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATTTATTGACGGCTCAATTTCTAAATATCCTCCGGCAGCg < 2:716241/140‑1 (MQ=255) aGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTGTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTGTTGCATATATTTACGGCGCAATTTCTCTATATCATCCGGCAGCGTTg > 1:4507687/1‑140 (MQ=255) aGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGTTTTCAATATGCTGCGGGTTTTTCATATATTGACGGCTCAATTTATAAATATCCTCCGGCAGCGTTg > 1:4113437/1‑140 (MQ=255) aGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCGTGGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCCTATATTTACGGCTAAATTTCTCAATATCCTCCGGCAGCCTTg > 1:5128542/1‑140 (MQ=255) aGAAAACTTATTCTCTTCTCGTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTg < 2:1612875/140‑1 (MQ=255) aaaaCTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGcc < 2:7745252/140‑1 (MQ=255) ttATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGaaaa < 2:3873317/140‑1 (MQ=255) ttATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGaaaa < 2:4381018/140‑1 (MQ=255) aTTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGcc > 2:2310907/1‑133 (MQ=255) ctcttctcttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAacaaca < 2:3137072/140‑1 (MQ=255) ctcttctcttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCGTTGATTTAAATATTCTGCGGGTTTTTCATATATTTACGGCTCAATTTCTCAATAAACTCCGGCACCGTTGCCCAAaacaaaa > 1:2688605/1‑138 (MQ=255) ttctcttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTATGCCGGCCGCTTTGATTTCAATATTCTGCGGGTTTTTCATATATTGACGGCTCAATTTCTAAATATACTCCGGCAGCGTTGCCGAAAACAACAtcg > 2:4475043/1‑140 (MQ=255) ttctcttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGTTTTCAAAATGCTGCGGGTTTTGCATAAATTTACGGCTCAATTTATCAATATACACCGGCACCGTTGCCGAAAACAACAacg > 1:4869842/1‑140 (MQ=255) ttctcttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTTCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACAtcg > 2:4818817/1‑140 (MQ=255) ttctcttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACAtcg > 2:1735325/1‑140 (MQ=255) ttctcttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACAtcg > 1:7585681/1‑140 (MQ=255) tctcttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACAtcgt < 1:252432/140‑1 (MQ=255) ctcttACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTTCATATATTGACGGCTCAATTTATCAATATCCTCCGGCAGCGTTGCCGAAAACAACAtcgtc > 1:6192743/1‑140 (MQ=255) tACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCACTATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTgc < 2:1260656/140‑1 (MQ=255) tACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTgc < 1:3514345/140‑1 (MQ=255) tACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTgc < 1:2796323/140‑1 (MQ=255) tACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTgc < 1:365851/140‑1 (MQ=255) aCTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTgcg < 2:5841200/140‑1 (MQ=255) aCTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTgcg < 1:572476/140‑1 (MQ=255) ttGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGct < 1:1633314/140‑1 (MQ=255) ttGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGct < 1:1913566/140‑1 (MQ=255) tGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTAAATATTCTGCGGGTTTTTGATATATTGACGGCTAAATTTATAAATATCCTCCGGCAGCGTTGCCGAAAACCACATCGTCGTgcgcgc > 1:2984292/1‑138 (MQ=255) aaTCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATTCTGCGGGTTTTGGATATATTGAAGGCTCAATTTATCAAAATACTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTg > 1:825434/1‑140 (MQ=255) aaTCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCACTg > 1:5541674/1‑140 (MQ=255) aacACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTTACGGCTCAATTTCTCAATATACTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGt > 2:2036645/3‑140 (MQ=255) aTCACCGCATGTTCAATATTTCTTGTGGTTAGGCCGGCCGCTTTGACCTCGATATGCTCGGGGTTTTGCATATATTGACGGCTCAGCTTCTCGATATCCTGCGGAAGCGTCGCTGAAAACAGCATCGTCGTACGCTCAGt > 2:3009983/1‑140 (MQ=255) aTCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGt < 1:2124226/140‑1 (MQ=255) cGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATTCTGCGGGGTTTGGATATATTTACGGCTCAATTTCTCAATATACTCCGGCAGCGTTGCCGAAAACAACAACGTCGTGCGCTCGGTCGGCa > 1:6760115/1‑140 (MQ=255) cGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAAAATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCa > 1:7349157/1‑140 (MQ=255) cATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGa < 2:5230693/140‑1 (MQ=255) cATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTACGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGa < 2:3586262/140‑1 (MQ=255) ttttCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATg < 2:6419500/138‑1 (MQ=255) tGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGTTAAAAACATCGTCGTGCGCTCTGTCGGCAGATg < 2:2738967/140‑1 (MQ=255) tGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATg < 2:2562512/140‑1 (MQ=255) gTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTAAATATGCAGCGGGTTTTGCATATAATTAAGGCTCAATTTATAAAAATCATACCGCAGCGTTGCCGAAAAAAACATAGTAGTTGGCAATCTCGGCATATga > 1:6419500/1‑139 (MQ=255) atatTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTAAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTAGTGCGCTCTGTAGGCAGATTCTTGAt > 2:2861632/1‑140 (MQ=255) ttCTTTGTGGTTAGGCCGGCCGCTTTGATTTCACTATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAAt < 2:5525111/140‑1 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTTCGGGTTTTGCCTATATTTAAGGATCAATTTATAAAAAACCTACGTCAGCGTTGACGAAAACAACATCTTCGTGCGCTCTGTCGGCAGATGCTTGATAATAGc > 2:3408251/1‑140 (MQ=255) tttGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGc < 2:154771/140‑1 (MQ=255) ttGTGGTTAGGCCGGCCGCTTTTATTTCAATATTCTGCGGGTTTTTCATATATTTACGGCACAAATTATCAATATACTCCGGCACCGTTGCCGAAAAAAACAACGTCCTGCCCTCAGTAGGCAGAAGCATGAAAAACGcc > 1:6983928/1‑140 (MQ=255) tgtgGTTAGGCCGGCCGCTTTGATTTAAATATGCTGCGGGTTTTGCATATATTGAAGGATCAATTTCTCAATATCATCCGGCAGCGGTGCCGAAAACAACAACGTCGTGCGCTCTGTCCGCAGATGCTTGATAAAAGCct > 2:1874334/1‑140 (MQ=255) ggTTAGGCCGGCCGCTTTGATTTCAATATTCTGCGGGTTTTGCATAAATTGACGGCACAAATTCTAAATAAACACCGGCAGCCTTGACGAAAACAAAAACGTCGTGCGCTCTTGAGGCAGATGCTTGATAATCGCCACTa > 1:6831517/1‑140 (MQ=255) ggTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTa > 2:403643/1‑140 (MQ=255) ggTTAGGCCGGCCGCTTTGATTTCAATATGATGCGGGTTTTGCATATATTTACGGCTCAATTTATCAATATCCTCCGGCAGCGTTGCCGAAAACAAAATCCTCGTGAGCTCTGTCGGCCGATTCTTTATAATCGCCTCTa > 2:3932346/1‑140 (MQ=255) gTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTAc < 1:1218015/140‑1 (MQ=255) aGGCCGGCCGCTTTCATTTCAATATGCTGCGGGTTTTGAATATATTGACGGCTCAATTTCTCAAAATCCTCCGGCCGCGTTGCCGGAAACAACATCGGCGTGCGCGCTGTGGGCAGGTCGTTGCTAATCGCCTCTACGTg > 2:6793004/1‑140 (MQ=255) gccggccgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCt < 1:6611026/140‑1 (MQ=255) gccggccgCTTTGATTTCAAGATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCt < 1:4680206/140‑1 (MQ=255) gccgCTTTGATTTCAATATTCTGCGGGTTTTTCATATATTTACGGCTCAAATTATAAATATACTCCGGCAGCGGTGCCGAAAAAAAAAACGTCGTGCGCTCTGTCGGCAGATTCTTTATAATAGCCTCTACTTTCTCGAt > 1:2370860/1‑140 (MQ=255) gccgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGAt < 1:1430273/140‑1 (MQ=255) gccgCTTTGATTTCAAAATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGAt > 2:5097273/1‑140 (MQ=255) cgCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGa < 1:6073430/140‑1 (MQ=255) cgCTTTGATTTCAATATGCTGAGGGTTTGGCATATATTGAGGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACGTGCTCGATGa < 2:3360233/140‑1 (MQ=255) gATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCa < 2:5592952/140‑1 (MQ=255) aaTATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCa > 1:5064597/1‑140 (MQ=255) atatGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAAt < 1:2497963/107‑1 (MQ=255) atatGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAAt > 2:6686881/1‑107 (MQ=255) tgctgcGGGTTTTGCATATATTGACGGCTCAATTTCTCAAGATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCAt < 2:1423317/140‑1 (MQ=255) gctgcGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCAtc > 1:929411/1‑140 (MQ=255) tgcGGGTTTTCCATATATTGACGGCTCAATTTCTCTATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCAtctc < 2:7586203/140‑1 (MQ=255) cGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGc > 2:1113396/1‑102 (MQ=255) cGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCAt > 1:4361605/1‑140 (MQ=255) cGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCAt > 1:532954/1‑140 (MQ=255) cGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCAt > 1:2710043/1‑140 (MQ=255) gTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGaaaa < 2:6085121/57‑1 (MQ=255) gTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGaaaa < 2:4228204/57‑1 (MQ=255) tttGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCt > 1:6009201/1‑140 (MQ=255) tGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTtc > 2:4756759/1‑140 (MQ=255) tGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTtc > 1:7496345/1‑140 (MQ=255) tGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTtc > 1:1114804/1‑140 (MQ=255) tGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTtc > 1:7686762/1‑140 (MQ=255) tGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTtc > 1:1254444/1‑140 (MQ=255) tatTGACGGCTCAGCTTCTCGATATCCTGCGGAAGCGTCGCTGAAAACAGCATCGTCGTACGCTCAGTCGGCAGATGCTTGATAATCGCCTCCACCTGCTCAATGAAGCCCATATTCAGCATCTCATCCGCTTCATCAAt < 1:4794097/140‑1 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt > 2:2483371/1‑140 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt < 2:7686709/140‑1 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt < 1:2931200/140‑1 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt > 1:5800219/1‑140 (MQ=255) tatTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt > 2:3766776/1‑140 (MQ=255) tatTGACGGCTCAATTTCTCAAGATCCTCCGGCAGCGGTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAAt < 1:5949519/140‑1 (MQ=255) ttGACGGCTCACTGTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGa < 2:7424127/140‑1 (MQ=255) ttGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATCTTCAGCATCTCATCGGCTTCATCAATGa < 1:4263816/140‑1 (MQ=255) ttGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGa < 1:3314097/140‑1 (MQ=255) ttGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGa < 1:145819/140‑1 (MQ=255) ttGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCGCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGa < 1:1001629/140‑1 (MQ=255) tGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGAc < 1:4942132/140‑1 (MQ=255) tGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGAc < 1:7154764/140‑1 (MQ=255) gACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGAcc > 1:22925/1‑140 (MQ=255) | TCGGGATTCTCCGTCATCAGCACATCTTTCAGCAAAGAAAACTTATTCTCTTCTCTTACTTGAATCACCGCATGTTCAATATTCTTTGTGGTTAGGCCGGCCGCTTTGATTTCAATATGCTGCGGGTTTTGCATATATTGACGGCTCAATTTCTCAATATCCTCCGGCAGCGTTGCCGAAAACAACATCGTCGTGCGCTCTGTCGGCAGATGCTTGATAATCGCCTCTACTTGCTCGATGAAGCCCATATTCAGCATCTCATCGGCTTCATCAATGACC > NZ_CP034943/3846485‑3846763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |