| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 316,303 | A→C | 5.0% | K41N (AAA→AAC) | opuAA → | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 316,303 | 0 | A | C | 5.0% | 1533.2 / 8.5 | 625 | K41N (AAA→AAC) | opuAA | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Reads supporting (aligned to +/- strand): ref base A (321/241); new base C (3/59); total (324/301) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.47e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 631 total aligned reads displayed.
TATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAACCGACTGCCG > NZ_CP034943/316167‑316442 | aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCTAGAAAGTAGCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGAATGCCAACGGAAAGAAAAAAAAAGAGATCCTGAAAGCGACCgg > 1:3685631/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCCACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:2353146/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:2477572/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:1005972/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:3194947/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:4692470/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:734146/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:234399/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:2182561/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:6231683/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:7686485/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:5889598/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATCAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGCAAGACAAAAAAAGAGGTCCTGAAAGCGACCgg > 2:633103/1‑140 (MQ=255) aaTATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAAc > 1:865819/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:2538911/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 2:4273081/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:307965/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 2:3118825/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:613370/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGAGCAACCGGTgggg > 2:6637307/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGAC‑AAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGt > 1:1185859/1‑140 (MQ=255) gtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGt > 2:7252059/1‑140 (MQ=255) tAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAACATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTa > 2:6998939/1‑140 (MQ=255) aGATGATAAACCAATTAATATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAACCAGTTCAAATGCTTGCCACCGGAAAGAAAAAAAACGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTaa < 2:3357406/140‑1 (MQ=255) aTGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAAt > 2:5784582/1‑140 (MQ=255) aTGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAAt > 1:4911833/1‑140 (MQ=255) aTGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGCAAACAAACAAATAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGACCCTGAAAGCGACCGGATCAACCGTTGGGGTAAAt < 2:1329233/140‑1 (MQ=255) agaAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGACACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTGGGGGTAAATCaa > 2:645807/1‑140 (MQ=255) agaAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCaa > 2:2608422/1‑140 (MQ=255) agaAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAAACGGTGGGGTAAATCaa > 2:5951780/1‑140 (MQ=255) aaaaaaaTTAATATAAAAGTCTATAAATTATATAAAATTTTTGGCAAACAAAAAAATAAAGCAGTTCAAATGTTTGCAAACTTAAATAAAAAAAAAGTGATCTTTAAATATACATTATAAACCGTTGGGGTAAATCaacc < 2:2718998/135‑3 (MQ=255) aaaCCAATTAAGATACAAGTCGAGAAAGTATATAAAATTTTTGGGAAACAAACAAAGAACGCATTTAAAAGGCTTGCCAACGGAACGACAAAAAAAGCGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 2:1719046/140‑1 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAATCAGTTAAAATGATTGCCAACGGAAAGACAAAAAAATAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:5183923/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAATAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:6782982/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGAc > 1:4399811/1‑113 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:3420853/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:1675328/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:3330801/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:4040458/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:4188934/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACAGGATCAACCGGTGGGGTAAATCAAGc > 1:6489042/1‑140 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTGGGGGTAAATCAAGCAg > 1:4544073/1‑140 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGCAg > 1:7024964/1‑140 (MQ=255) aaTTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGGTTGCCAACGGACAGACACAAAAAGAGTTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtt > 1:2874583/1‑140 (MQ=255) aaTTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtt > 2:3487558/1‑140 (MQ=255) taacaaaaacGTCGAGAAAGTAACAAAAATTTTTGGCAAAAAAAAAAAGAAAGCAGTAAAAATGCTTGCCAACGCAAACACAAAAAAATAGAGCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:2388529/134‑1 (MQ=255) tAATATAAAAGTCGATAAATTATCTAAAATTTTTGGCAAACAAACAAAGAAAGCAGTTCAAAGGCTTGCCACCGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:1431284/140‑1 (MQ=255) tAAGATAAAAGTCGATAACGTATATAAAATTTTTGGCAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAACAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:4648557/140‑1 (MQ=255) tAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:5262838/140‑1 (MQ=255) tAAGATAAAAGCCGACAAAGTATCTAAAATTTTTGGCAAAAAAAAAAACAACGCAGTTAAAATCCTTCCCAACGCAAACAAAAAAAAAGACATCCGGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:378820/140‑1 (MQ=255) acaTAAAAGTCGACAAATTATCTAAAATTTTGGGCAAACAAAAAAAGAACGCAGTTCAAATGCTTCCCAACGTAAACAAAAAAAAAGACATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 1:2703627/138‑1 (MQ=255) aGATAAATGTCGATAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:420100/140‑1 (MQ=255) aGATAAAAGTCGCTAAATTATCTAAAATTTTTGGCAAAAAAACAAAGACAGCTGTTCAAATGCTTGCCACCGGAAACAAAAAAAAAGAGATCGTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:6389734/140‑1 (MQ=255) aaaGTCGAGAAAGTATATAAAATTTTGGGTAAAAAAACAAAGAACCCAGTTCAAATGCTTGCCAACGTAAAGAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGtata < 1:5350889/140‑1 (MQ=255) aaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTatat > 2:3609125/1‑140 (MQ=255) gataatttatataAATTTTTTGGGAAACAAACAAACAAAGCTGTTCAAATGCTTGCCAACGCAAAGAAAAAAAAAGAGATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg < 1:1850195/133‑1 (MQ=255) taatttATCTAAAATTTTTGGGAAACAAACAAATAACCCCGTTCAATGGCTTGCCACCGTAAAGACAAAAAAATAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTg < 2:2239098/135‑1 (MQ=255) ctCTAAATTTTTTGGGAAACAAAAAACGAACGCAGTTCAAAGGGTTGCCACCGGATAAAAAAAAAAACACATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAAACAAGCAGATTTTGATGTATATGATGGTGAGatat < 1:3531997/139‑1 (MQ=255) aTCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACCAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGatat > 1:7259736/1‑140 (MQ=255) atAAATTTTTTGGTAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATAttt < 1:5715104/139‑1 (MQ=255) aaatTTTTTGGCAAAAAAACAAAGAAAGCAGTAAAAATGCTTGCCAACGGAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGt < 2:2537223/140‑1 (MQ=255) aaaaTTTTTGGCAAACAAACAAACAAACCAGTAAAAATGCTTGCCAACGTAAACAAAAAAAAAGAGAACCGGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGt < 1:6972315/140‑1 (MQ=255) aaaaTTTTTGGCAAAAAACCAAACAAAGCAGTTCAAATGCTTGCCAACGGAAACACAAAACAACAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGt < 2:5127689/140‑1 (MQ=255) ttttGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatca > 2:392395/1‑140 (MQ=255) tttGGGAACCAAACAAAGAAAGCTGTTCAATTGCTTGCCAACGGAAAGACAAAAAAAGTGAGCGGGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:1987721/140‑1 (MQ=255) tttGGGAAACAAACACAGAAAGCAGTACAAAGGCTTGCCAACGGAAAGACAAAAAAAGAGATCCGGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:112633/140‑1 (MQ=255) tttGGGAAACAAACAAAGAAAGCAGTTCAAAGGCTTGCCAACGGAAACACAAAAAAAGAGAGCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:5673242/140‑1 (MQ=255) tttGGGAAACAAAAAAAGAAAGCATTTCAAATGCTTGCCAACGGAAACACAAAAAAAGAGATCATGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:4059997/140‑1 (MQ=255) tttGGCAAAAAAAAAAATAACCCACTAAAAATGATTCCCAACCGAAACAAAAAAAAAGACATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:5750209/140‑1 (MQ=255) ttGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATg > 2:2433454/1‑140 (MQ=255) gggtaaaaaaacAAAGAAAGCATTTAAAATGCTTCCCAACGCAAACACAAAAAAACACATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:3844303/136‑1 (MQ=255) ggcaaacaaacaaacAAAGCATTTCAAATGCTTGCCAACGGAAACA‑AAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 1:5011342/137‑1 (MQ=255) gcaaacaaacACAGAAACCAGTTAAAATGCTGGCCAACGCAAACACAAAAAAACAGAGCCCGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGCAGATTTTGATTTATATGATGGTGAGATCTTTGTCATCATGGGt < 2:456935/138‑1 (MQ=255) gcaaacaaacAAAGAACGCAGTCAAAATGCTTGCCAACCCAAACACAAAAAAAGAGCTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 2:1200963/138‑1 (MQ=255) agCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATGTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCATGGAGCGGTa > 1:4631569/1‑140 (MQ=255) actgcAAATGCTTGCCACCGGAAAGACAACAAAAGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAAt < 2:6934002/136‑1 (MQ=255) gTTCAAATGCTTGCAAACGGAAAGACAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 2:4403462/140‑1 (MQ=255) cataTGCTTGCCACCGCAAACAAAAAAAAAGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAc < 1:6361336/137‑1 (MQ=255) cAATTGCTTCCAAACGTAATGAAAAAAAAAGTGTTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAc < 2:613370/140‑1 (MQ=255) aaactGCTGGCCACCGTAAACAAAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAc < 1:1980828/136‑1 (MQ=255) ttGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt > 1:1458393/1‑77 (MQ=255) tccaaaCGCACAGACAAAAAAAGAGAGCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc < 1:7611642/136‑1 (MQ=255) tGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCTGGGGTGTATAAGGGAGCGGTAAATCAACTTTAGTAc > 2:7755768/1‑140 (MQ=255) tGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGTTAAATCAACTTTAGTAc > 2:5040741/1‑140 (MQ=255) tGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc > 1:738599/1‑140 (MQ=255) tGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc > 2:2044794/1‑140 (MQ=255) tGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAGGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc > 1:5590961/1‑140 (MQ=255) tGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAGTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGTGAGCGGTAAATCAACTTTAGTAc > 1:130778/1‑140 (MQ=255) tGCCAACGCAAAGACAAAAAAAGAGAACCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc < 2:3029725/140‑1 (MQ=255) cgCCAACTCAAACACAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc < 1:3204406/139‑1 (MQ=255) atgACAAAACAAGATATCCTGAAAGCGACCGGATCAACCGTTGGCGTAAATCAAGCAGTTTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTTTTaaa < 2:5462186/138‑1 (MQ=255) aaGAAAAAAAACGAGATCCGCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTaaa < 2:6760179/140‑1 (MQ=255) aaGAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTaaa < 1:97170/140‑1 (MQ=255) aGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATTATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAAc < 2:7144798/140‑1 (MQ=255) aaaaaaaaaCAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCg < 1:7164075/138‑1 (MQ=255) aCAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGCAGATTTGGCTGTATATGATGGTGAGATATTTGTCATCAGGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTCAACCg > 2:4927017/1‑140 (MQ=255) aaaaaaaaGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCgg < 2:4356245/139‑1 (MQ=255) aaaaaGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCtt > 2:7501154/1‑140 (MQ=255) aTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAAcc > 2:5549192/1‑140 (MQ=255) ctcaaaGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAACCGAc < 2:2848105/137‑1 (MQ=255) | TATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAACCGACTGCCG > NZ_CP034943/316167‑316442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |