| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 112,586 | G→T | 8.0% | intergenic (+264/‑40) | gltX → / → cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 112,586 | 0 | G | T | 8.0% | 1462.3 / 20.7 | 596 | intergenic (+264/‑40) | gltX/cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (161/361); new base T (68/4); total (229/367) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.41e-26 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 610 total aligned reads displayed.
TTTCGAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTAC > NZ_CP034943/112447‑112725 | cGAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGt < 2:2492125/140‑1 (MQ=255) tCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAaga < 2:2238970/140‑1 (MQ=255) tCAGTAGTCCATGGCCGCCGCCGCCGGTACAGGCTGAAGTGGGGACCGCAGAAGCCTGCTTTTCAACCAGCGTCGAACCGCGCGGTTTAAGCGTCTCAGGCATGTTTTCATGGAGAGGCGC‑TTTTTTTATTGGGTGAaga < 2:1001121/140‑1 (MQ=255) aTTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGaaa < 2:5192701/140‑1 (MQ=255) tCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATc < 1:715126/140‑1 (MQ=255) tCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATc < 1:3207549/140‑1 (MQ=255) cggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAATCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAACAGGCAATCAAAAaga > 1:295208/1‑140 (MQ=255) ggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATagag < 1:1142807/140‑1 (MQ=255) gccgccgccGTTACAGGCTGAAGGTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAACAGGAAATCAAATAgtga > 2:261493/1‑140 (MQ=255) ctggCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGc < 1:55823/138‑1 (MQ=255) ggCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCAt < 2:842275/140‑1 (MQ=255) ggCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCAt < 1:5860431/140‑1 (MQ=255) aaGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTTGGTGGAGTGGTAATGCAATATAGAAGTGGGGGGTAGCATGTGtt > 1:302051/1‑140 (MQ=255) ggAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGTGTAGAGGAAAACAAAAAGAGAAATGGGGGGAAGCATGTGTTTTTTat > 1:2741077/1‑139 (MQ=255) gagaGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:7435922/140‑1 (MQ=255) gagaGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:2222653/140‑1 (MQ=255) gagaGCACATGTATGCGTTTCAAAAAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCCGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:3357594/140‑1 (MQ=255) agCAGAAGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGGGAAGAGGCAATCAAAAATAGAACTGGGGGGAAGCCTGTGTTTTTTAGAAtt > 1:828493/1‑139 (MQ=255) taaGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCa < 1:7741665/139‑1 (MQ=255) gTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGACATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaag < 1:1601463/140‑1 (MQ=255) gTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGGGAAGACGAAAACAAAAAGAGAACTGGGGGGAACCATGTGTTTTTTAGAATGCTCacac > 1:4433707/1‑137 (MQ=255) ctCTGCTTTTCAAACAGAGTCGAACCGCGCGGTTTAAGAGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaag < 2:4579365/139‑1 (MQ=255) cggCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTGTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:4446321/138‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:4806218/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:6797173/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:3243011/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:4695253/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:2486493/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:4853146/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGGTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:6417673/140‑1 (MQ=255) atGCTTTTCAAACAGAGTGGAACCGCGCGCTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAACCATGTGTTTTTTAGAATGCTCAaagaa < 2:74/139‑1 (MQ=255) gCTTTTCAACCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:4914136/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGCAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:1441368/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagacga < 1:6510617/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:2712284/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:1127348/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:1851217/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:926463/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:2618038/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:7229615/140‑1 (MQ=255) gCTTTTCAAACAGAGGGGAACCTCGCGGTTTAAGCGTCTCTGTCATGATGTCATGCAGAGGCGC‑TTTTTGTAGTGGGTTACGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGATTTTTAGAATGCTCAAagaaga < 2:6141755/140‑1 (MQ=255) ttttCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACa < 1:5012528/140‑1 (MQ=255) ttCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGACAAGTTGGGGGAAGCATTTGTTTTTTAGAATTATCAAataagaaaat > 2:2039993/1‑136 (MQ=255) cAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTTTTTGGGGGAGAGGGAATCAAATATAGTAGTTGGGGGGAGCAGGGGTTTTTTATAATTCTCAAAGAAAACaattt > 1:4670348/1‑136 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGCCATTGATa < 2:3583923/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:3946359/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:7679113/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:5663494/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:1896063/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:3142293/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGGGCAGAGGAAATCAAATAGAGAAGCGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:6572618/140‑1 (MQ=255) cAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACa < 2:412932/140‑1 (MQ=255) gagTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTATTTGGTGAAGAGGAACTCAAATATAGTAGGGGGGGGCAGCCTGTGTTTTTTAGTATGCGGAAAGTAGACCTTTATACact > 1:7072338/1‑138 (MQ=255) agTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGTGAAGAGGAAATAAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTTGAATTCTCAAAGAACACATTGATAAAgtg > 2:5924281/1‑140 (MQ=255) tGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGtt < 2:2091186/140‑1 (MQ=255) tGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATAAAATAGAGAAGTGGGGGGAAGCATGTTTTTTTTATAATGCTCAAAGAAGACATTTATAAAGTGtt > 2:2394502/1‑140 (MQ=255) tGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGAGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGtt < 2:4336283/140‑1 (MQ=255) tGGAACCGCGCGGTTTAAGCGTCTCGGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGtt < 2:3319375/140‑1 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGCGGCGC‑TTTTTTTATTTGGGGTAGACGAAATGAAATATTGAATGGGGGGGACGCCTGTGTTTTTTTGAATTCTGTAAGAAACAATTGATACCGTGTTAGGTCAAg > 1:100097/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTTGGTGAAGAGGAAATCAAATAGAGTAGGGGGGGGAAGCAGGTGTTTTTTAGAATGCTCAAAGAAGAACTTGATAAATTGTTCGATCAAg > 2:6668095/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTGGGTGGAGAGGAAAAAAAATATAGAAATGGGGGGAAGCATGTGTTTTTTAGTATGCTCAAAGAAGACATATATAAACTGTTAGATCaaa > 1:5703886/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGTGTAGAGGAAATCAAATATAGAAGTGGGGGGCAGCATTTGTTTTTTTGAATTCTGAAAAAAGACAATGATAAAATGTTCGATCaat > 1:5173421/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGTGAAGAGGAAATCAAATATAGAACTGGGGGGAAGCCTGTGTTTTTTAGAATGCTAAAAGAAGACATTGATACACTGTTCGaaaaaa > 1:5953952/1‑135 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGTGAAGAGGAAAACAAAAAGAGAAGTGGGGGGAACCCAGTGTTTTTTATTATTCTCAAATAAAAAATTGATAAAGTGTTCGATAAAg > 1:7504877/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGTGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATTCTCAAAGAAGACATTGATACAGTGTTAGATCAAg > 2:5136207/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAg > 2:6992939/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAAAATAGAAGTGGGGGGAAGCATGTGTTTTTTAGAAAGCTCAAACAAGACATTGATACAGTGTTCGATCAAg > 1:7624852/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATAAAAAAGAGAATTGGGGGGAACCATGTGTTTTTTTGAATGCGCAAAGAAGACAATGATACAGTGTTAGATaaat > 1:4275233/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGGGAAGAGGAAATCAAATAGAGAAGGGGGGGGAAGGATGTGTTTTTTAGAATGCTCAAAGAAGACAATGATACCGTGTTCGATCAAg > 2:2805436/1‑140 (MQ=255) cgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTTGGTGTAGATGAAATAAAATAGATAACTGGGGGGAAGCATGTTTTTTTTATAATGCTGAAATAAGAAAATTTTACAATGTTAGATAAAGAt > 1:6638476/1‑140 (MQ=255) tttAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGGGAAGAGGAAAACAAATAGAGAACTGGGGGGAAGCCTTTGTTTTTTAGAATGCTCAAATAACACAATTAAACAGGGTTCGATCAATATAca > 1:6111689/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTTGGGGAAGAGGAAATAAAAAACAGAAGTGGGGGGAAGCATGTGTTTTTTATAATTCTCAAAGAACACAATTATAAAGTGTTAGATCAAGATACATCACCaagaa > 1:3568391/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGTAGAGGGAAACAAATATTGAAGTGGGGGGGAGCCGGTGTTTTTTATAATTCTGAAACAATACATTTATAAAGTTTTCGATAAAGATACAGCAGCaagaa > 1:6264141/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAATTCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaa > 2:7167810/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAATAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaa > 2:5409374/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAACCAGGTTTTTTTTATAATGCTCAAAGAAGACATTGATAAAGTGTTCGATCAAGATCAAGCAGCaagaa > 2:6254236/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTTTTTGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCCTGTGTTTTTTTTAATGGTCAAAGAAGACATTGGTAAAGTGTTCGTTAAAGATCAAGCAGCaagaa > 1:6905267/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTATTTGGTGTAGAGGCAAAAAAAAATATAAGTTGGGGGACGCATGTGTTTTTTTTAATTCTCAAAAAAGAAAATGAAAAAGTGTTCGATAAAAATACAGCAGCaaaaa > 1:1280956/1‑140 (MQ=255) tctGTAATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAATAGGAAATCCATTAGATAAGTGGGGGTAACCAGGTGTTTTTTAGAATTCTAAATGTAGACATTTATACAGTGTTCGAGGAAGATACCGCAGCtagta > 2:1319332/1‑138 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCACATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 1:3274549/140‑1 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTTTAATGCTCAAAGAAGACAATGATAAAGTGTTCGATCAATATACAGCAGCAAGAAGTTATTTTGaa > 2:1238271/1‑140 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 2:6035370/140‑1 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 2:5038738/140‑1 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 1:6830291/140‑1 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATGGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 2:4957599/140‑1 (MQ=255) ctCAGGCAGAGGCGC‑TATCTGTATGGGGCGACCCCGAACTCCCAGAGAGAAGTGGCGGGAAGCAAGGGTTTTTGAGAATGCTCAAAGAAGACATTGATACCGGGTTCGAGCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 2:1777778/139‑1 (MQ=255) tCATGCAGAGGCGCTTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGTAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 1:1778787/140‑1 (MQ=255) aTGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTg > 2:3436589/1‑140 (MQ=255) aTGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAAACCAATAGAGAAGTGGGGTGAAGCATGTGTTTTTTAGAAAGCTCAAAGAAAAAATTGATACAGTGTTAGATAAATATCCATCAGCAAGAAGTTATTTTGAATTg > 2:3746871/1‑140 (MQ=255) tttttATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTc < 1:3672659/140‑1 (MQ=255) ttttATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTcc < 1:1982525/140‑1 (MQ=255) tATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGACGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGt > 2:5561190/1‑140 (MQ=255) tATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGt < 1:5435897/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGCAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:3665941/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:4253692/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:295248/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:7503797/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGATTa < 2:1463442/140‑1 (MQ=255) gggTGAAGCGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTAc < 1:3478619/140‑1 (MQ=255) gggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTAc < 1:4093397/140‑1 (MQ=255) | TTTCGAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTAC > NZ_CP034943/112447‑112725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |