| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,293,306 | G→T | 7.3% | V127L (GTA→TTA) | EO946_RS06740 → | sigma‑70 family RNA polymerase sigma factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,293,306 | 0 | G | T | 7.3% | 583.3 / 6.6 | 215 | V127L (GTA→TTA) | EO946_RS06740 | sigma‑70 family RNA polymerase sigma factor |
| Reads supporting (aligned to +/- strand): ref base G (124/66); new base T (2/23); total (126/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.12e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 215 total aligned reads displayed.
CCGAGAATCATCGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTGCCTGAAAGC > NZ_CP034943/1293168‑1293441 | ccGAGAATCATCGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGt > 1:573227/1‑140 (MQ=255)ccGAGAATCATCGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGt > 1:6016635/1‑140 (MQ=255) catcGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCt > 1:4912818/1‑140 (MQ=255) catcGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCt > 1:5580427/1‑140 (MQ=255) catcGAATCATTTACCAGCACGATGATGGTGGAGCCGGACGGACAGGTATCAGAAGAAGACACAGAGAGAATCCAAGAAGCGTTCTCCCTGTTAACCGGCAGACAAAAAGAAATCTTTTTGCTGCATAAGTTCGACTGCt > 1:7362144/1‑140 (MQ=255) atcGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGACTCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCtt < 2:7298203/140‑1 (MQ=255) atcGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCtt < 2:7433921/140‑1 (MQ=255) atcGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCtt < 1:38772/140‑1 (MQ=255) atcGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCtt < 1:7287183/140‑1 (MQ=255) tttCCAGCACGATGATGGTTGAGCCGGACTGACAGGTATCAGAAGAAGACAGAGAGAGAAGCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGaa < 2:2217276/140‑1 (MQ=255) tCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGGGTTATCCCTGTTAACGGGCAGAGAAACAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACg < 1:1400506/140‑1 (MQ=255) tCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACg < 1:7122020/140‑1 (MQ=255) tCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACg < 1:3437692/140‑1 (MQ=255) tCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACg < 1:6162196/140‑1 (MQ=255) tCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACg < 1:2105400/140‑1 (MQ=255) tCCAGAACGATGATTGTTGATCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGACTCAAAGAAGCGTTATCCCTGTTTACGTGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACg < 2:6379105/140‑1 (MQ=255) aGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAAt > 1:2972907/1‑140 (MQ=255) aGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAAt > 2:3560061/1‑140 (MQ=255) aGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAAt > 2:6977229/1‑140 (MQ=255) cACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCg < 1:1069202/140‑1 (MQ=255) cACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCg < 1:4338139/140‑1 (MQ=255) cACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCg < 1:4175207/140‑1 (MQ=255) cACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCg < 1:2775398/140‑1 (MQ=255) cGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGACGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCt < 1:2733891/140‑1 (MQ=255) cGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGACTCGCt < 1:6306833/140‑1 (MQ=255) ggTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGAtcttc > 1:480679/1‑140 (MQ=255) gTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGAtcttct < 1:1205282/140‑1 (MQ=255) gTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGAtcttct < 2:4912818/140‑1 (MQ=255) gTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGAtcttct < 1:1632760/140‑1 (MQ=255) gAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCgg > 1:6857427/1‑140 (MQ=255) gCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGgtg > 2:7522503/1‑140 (MQ=255) gCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGgtg > 2:2752223/1‑140 (MQ=255) gacggacAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGAtcttct > 1:750678/1‑131 (MQ=255) acggacAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTaaaa > 1:5351697/1‑140 (MQ=255) acAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAAt > 2:5761093/1‑140 (MQ=255) acAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAAt > 2:7592988/1‑140 (MQ=255) tATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACt > 2:174666/1‑140 (MQ=255) tATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACt > 2:5677543/1‑140 (MQ=255) tATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACt > 2:6626207/1‑140 (MQ=255) agaagaagaCAGAGAGCGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCTGTGTAAAAAAATCGACTGTGc > 1:1491287/1‑140 (MQ=255) taagaagaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTATAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCa > 1:5752662/2‑140 (MQ=255) aagaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGACATGTTTTTGCTGCCTAAGGTCGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGGAAAAAGATCGACTGTGCACACg > 1:4041782/1‑140 (MQ=255) aagaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACg > 2:688124/1‑97 (MQ=255) aagaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACg > 2:7754238/1‑140 (MQ=255) aagaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACg > 2:5433929/1‑140 (MQ=255) aagaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACg > 2:5123003/1‑140 (MQ=255) aagaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACg > 1:1956589/1‑140 (MQ=255) gaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCCAACGAc > 1:5035059/1‑140 (MQ=255) gaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGAc > 1:5860330/1‑140 (MQ=255) gaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGAc > 2:5927732/1‑140 (MQ=255) gaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGAc > 1:5379848/1‑140 (MQ=255) gaCAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGAc > 2:3283477/1‑140 (MQ=255) agagagaATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCa > 1:4529101/1‑140 (MQ=255) agagagaATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTAGGTGTAAAAAAATCGACTGTGCACCCGACCATCa > 1:6964110/1‑140 (MQ=255) aaTCCAAGAAGGGTTATCCATGTTAACGGGAATAGAAAAAGAAATTTTTTTGCTGCATAAGGTAGAATGCTTTTATTATCAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACggg < 2:7147131/140‑1 (MQ=255) aaTCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACggg > 2:313918/1‑140 (MQ=255) accaaagaagCTTTATCCTGGTTTCCGCCCATAGAATAACAATTTTTTTTGCTGAATCAGTATTAATTGTTTTCTTATGACCTAATGGATGATTTTCTCTTTTAAAAAAAATCGACTGTGCAAACGACCATCAAACGGGc < 2:2202686/136‑1 (MQ=255) accaaagaagCGTTAGCCCTGTAACCGGGCAGACAAAAATAATTGTTTTTGCTGCATATGGTCGAATGGTTTTATTATGACCGAATCGCTGATGTTCTGGTTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGc < 1:6731111/136‑1 (MQ=255) tCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCg > 2:5635524/1‑140 (MQ=255) cAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGAGTGTGCAAACTACCATCAAACGGGCGAt > 2:2264306/1‑140 (MQ=255) cAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGAt > 2:1968476/1‑140 (MQ=255) cAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGGAAAAAAATCGACTGTGCAAACGACCCTCAAACGGGCgcg > 1:4091993/1‑138 (MQ=255) agaagCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACTACCAACAAACGGGCGATCg > 1:6604669/1‑140 (MQ=255) ggtttATCCCTTTTAACGGGCAGAGAAAATGAAATGTTTTTGCTGAATAAGTTAGAATGCTTTTATTATGAACTAAACCCTTAACTTCTCGGTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTaaa < 2:1915258/137‑1 (MQ=255) gctttttCCCTTTTACCGTGCATATAAAATGAAATTTTTTTTCTGCTTTAGTTATTTTGTTTTTTTTTTTAACCATTGGGTTATGTTGGGGGTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTaaa < 2:7029021/134‑1 (MQ=255) gctttATCCCGTTTACGGGGAATAAAAAAAGAAATGTTTTTGCTGCATAAGTTAGAATGCTTTTCTTATCAACCAATCGGTTATCTTCGGGGTGAAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTaaa < 1:550151/137‑1 (MQ=255) gatttATCCCTTTTAACGGCCATAAAAAAATAATTTTTTTTGCTTAATACGGTAGAATGTTTTTCTTATAAACGAATCGCTTATCTTCTCGTTGAAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTaaa < 1:4840664/137‑1 (MQ=255) gCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTaaa > 2:2881639/1‑140 (MQ=255) cctttATCCCTTTTACCGGGATGTTAAAAAGATATGTTTTTGCTTCATATTGTAAATTTATTTTATTATCAACGAATGGTTTATTTTCTGGTTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTaaa < 2:3774200/137‑1 (MQ=255) cctttATCCCTTTAAACGGGCAGACAAAAACAATTGTTTTGGCTGAATACGGTCCACTGCTTTTCTTATCAACCAATGGCTGATGTTCTGGGTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTaaa < 1:4938910/137‑1 (MQ=255) aTCCCTTTTAAGGGGCAGAGAAAAATAAATTTTTTTGGTGCATAAGGTACAATGTTTTTCTTATGAACTAATCGCTTATCTTCTCGGTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGc < 2:6445567/140‑1 (MQ=255) aTCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGc > 1:809618/1‑140 (MQ=255) tccgttttAACGGGAATACAAAAATAAATTTTTTTGCTGAATACGGTAGAATGATTTTATTATGAACGAATGGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCa < 1:3709506/134‑1 (MQ=255) tcagttttAAGGGGAATAAAAAAATAATTTTTTTTGCTGAATTAGTTAGATTGCTTTTATTTTTAACTAATCGCTTTTCTTCTGGGTTAAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCa < 1:2213382/134‑1 (MQ=255) tCCCTTTAAACGGGCAGACAAAAACAAATTTTTTTGCGGAATATGTTAGAATGCTTTTTTTTTGAACTAATCGCTTATATTCTCGTTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCa < 1:3626685/140‑1 (MQ=255) gTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGAc > 1:2392534/1‑140 (MQ=255) gTTAACGGACAGAGAAAAGGAAATGTTTTTGCTGCATAAGGTAGAATGTTTTTCTTATGAACGGATCGCCGATCTTCTCGGCGTAAAAAAATCGACAGTGCAAACGACGATTAAACGGGCGAGTTTAAAGATGCAAAGAc > 1:2277581/1‑140 (MQ=255) cGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGAcagcag > 1:1126207/1‑140 (MQ=255) gggaatagaAAAACAAATTTTTTTGGTGCATAAGGTAGAATGATTTTCTTATCAACTAATCGCTGATCTTCTGGTTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCagg < 2:6188776/134‑1 (MQ=255) gggCAGAGAAAAAGAAATTTTTTTGCTGAATAAGTTTGATTGATTTTCTTATTAACGAATCGCTTATCTTCTGGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCagg < 2:5325817/140‑1 (MQ=255) gggAAGATAAAAATATTTGTTTTTGCTGCATTTTTTTTTTTGCTGTTCTTATGAACTAATCGCTTATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCagg < 2:4649697/140‑1 (MQ=255) ggCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCagga > 1:2997292/1‑140 (MQ=255) cAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCTACTGTGCAAACGACAATCAAACGGGAGATCGTAAAGATGCAAAGACAGCaggagg > 2:4116237/1‑140 (MQ=255) cAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCaggagg > 2:3340333/1‑140 (MQ=255) cAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGAACATCAAACGGTCCATCGTAAAGATGCAAAGACAGCaggagg > 2:4576181/1‑140 (MQ=255) gagaAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGaa > 2:507994/1‑140 (MQ=255) gagaAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGaa > 2:6477071/1‑140 (MQ=255) gagaAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGaa > 1:7171143/1‑140 (MQ=255) aaGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAAAGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAat > 1:3168562/1‑140 (MQ=255) ataattttttttGCTGAATAAGTTAGAATGTTTTTATTATTAACGAATCGCTTATCTTCTCGGTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAatc < 2:3810436/133‑1 (MQ=255) ttttgGCTCAATATGGTACATTGTTTTTCTTATGACCGAAGCGCTGATTTTCGGGGTTAAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCt < 1:1048214/140‑1 (MQ=255) tttGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTg > 2:6579671/1‑140 (MQ=255) tttGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTg > 2:7502482/1‑140 (MQ=255) gcATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCTATCGCTTGCCTGaa > 1:6884978/1‑140 (MQ=255) gaatatGGTAGAATTGTTTTATTATGAACGAATGGATTTACTTCTCGGTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTGCCTGaa < 2:2987443/138‑1 (MQ=255) cATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTACAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTGCCTGaaa > 1:4327453/1‑140 (MQ=255) aTAAGTTTGAATTCTTTTCTTATTAACGAATCGCTGATCTTCTCTGTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTGCCTGAAAg < 2:123433/140‑1 (MQ=255) aTAAGTTATAATGCTTTTATTATGAACGAATCGATGATGTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTGCCTGAAAg < 2:7190221/140‑1 (MQ=255) aTAAGGTAGAATGATTTTCTTATTAACTAATCGCTGATCTTCTCGTTTTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTGCCTGAAAg < 2:5580427/140‑1 (MQ=255) tAAGGTATATTGCTTTTCTTATGACCGAATCGCTTATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTGCCTGAAAGc < 2:2392534/140‑1 (MQ=255) | CCGAGAATCATCGAATCATTTTCCAGCACGATGATGGTTGAGCCGGACGGACAGGTATCAGAAGAAGACAGAGAGAGAATCCAAGAAGCGTTATCCCTGTTAACGGGCAGAGAAAAAGAAATGTTTTTGCTGCATAAGGTAGAATGCTTTTCTTATGAACGAATCGCTGATCTTCTCGGTGTAAAAAAATCGACTGTGCAAACGACCATCAAACGGGCGATCGTAAAGATGCAAAGACAGCAGGAGGAAATGAATCGATCGCTTGCCTGAAAGC > NZ_CP034943/1293168‑1293441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |