| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,485,790 | G→T | 5.8% | D52Y (GAT→TAT) | ktrC → | Ktr system potassium transporter KtrC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,485,790 | 0 | G | T | 5.8% | 1036.7 / 11.6 | 365 | D52Y (GAT→TAT) | ktrC | Ktr system potassium transporter KtrC |
| Reads supporting (aligned to +/- strand): ref base G (188/141); new base T (2/32); total (190/175) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.92e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 370 total aligned reads displayed.
GCGGTAATTGGACTTGGCCGTTTTGGTGGCAGTATTTGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCATTACAGT > NZ_CP034943/1485652‑1485929 | gcgggcaTTGGCCTGGGCCGTTTTGGTGGCAGTCTTTGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGAGAAAGTCAACGACTATGCCAAGATCGCATCCCACGCCGTTATCGGTGa < 2:922582/134‑1 (MQ=255) tAATTGGACTTGGCCGTTTTGGTGGCAGTATTTGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCa < 2:5097237/140‑1 (MQ=255) gaaTTGGACTTGGCCGTTTTGGTTGCATTATTTTCAAAGCATTACTCGTAGAAGGCGTCGAGGTTATGGCGATGGAGATCTATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCa < 2:1556531/139‑1 (MQ=255) ggACTTGGCCGTTTTGGTGGCAGTATTTGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGa < 2:7767472/140‑1 (MQ=255) tGGCCGTTTTGGTGGCAGTATTTGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAAt < 2:1797728/140‑1 (MQ=255) tGGCCGTTTTGGTGGCAGTATTTGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGGTATCGGTGATTCAACAGACGAAt > 2:294164/1‑140 (MQ=255) ggCCGTTTTGGTGGCAGTATTTGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATc > 2:274985/1‑140 (MQ=255) tttGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGt < 2:5492345/140‑1 (MQ=255) aaGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGa > 1:435459/1‑140 (MQ=255) aaGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGa > 2:6530547/1‑140 (MQ=255) gCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGGCAAGATCGCATCCGACGCCGTTATCGGTGATTCCACAGACGAATGTGTCCTGAAAAGGTTGGGGGTGCGaag > 1:4264817/1‑139 (MQ=255) gCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGCTTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGaaa > 2:4100614/1‑140 (MQ=255) gCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGaaa > 1:2332046/1‑140 (MQ=255) cATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAAt > 2:3542025/1‑140 (MQ=255) tAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAAtttt > 2:4740178/1‑140 (MQ=255) aGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGa < 2:364857/140‑1 (MQ=255) gCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGAc < 1:5929636/140‑1 (MQ=255) gCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGAc < 1:7448113/140‑1 (MQ=255) gCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGAc < 1:4804391/140‑1 (MQ=255) gCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGAc < 1:2996369/140‑1 (MQ=255) gCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGAc < 1:2936742/140‑1 (MQ=255) gCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGAc < 1:2813063/140‑1 (MQ=255) gCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGAc < 2:694901/140‑1 (MQ=255) agaagGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGACTATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACg > 1:1175980/1‑140 (MQ=255) agaagGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACg > 1:1005597/1‑140 (MQ=255) agaagGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACg > 2:1967785/1‑140 (MQ=255) agaagGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACg > 1:3826464/1‑140 (MQ=255) agaagGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACg > 2:445868/1‑140 (MQ=255) agaagGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACg > 1:2106479/1‑140 (MQ=255) agaagGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACg > 1:4026808/1‑140 (MQ=255) agaagGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACg < 2:7371568/140‑1 (MQ=255) cGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTAGTg > 2:6294416/1‑140 (MQ=255) gTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAAt < 1:6178388/140‑1 (MQ=255) aTGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCgg > 1:5436776/1‑140 (MQ=255) aTGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCgg > 2:3220456/1‑140 (MQ=255) tGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAAt > 1:2544058/1‑84 (MQ=255) gATGTATATCGATGAAGATAAAGTCAACTAATATGACAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGaaa < 2:3826464/140‑1 (MQ=255) gATGGATATCGATGACGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGaaa < 2:5625511/140‑1 (MQ=255) aTGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGaaaa > 2:6473046/1‑140 (MQ=255) aTGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGaaaa > 2:5721286/1‑140 (MQ=255) aTGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGaaaa > 2:6902903/1‑140 (MQ=255) aTGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGaaaa > 2:264354/1‑140 (MQ=255) aTGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGaaaa > 2:2151020/1‑140 (MQ=255) aTGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGaaaa > 2:3502286/1‑140 (MQ=255) aTGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGaaaa > 1:5247389/1‑140 (MQ=255) tGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAat > 1:6496336/1‑140 (MQ=255) atCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCa < 2:3341511/140‑1 (MQ=255) gATGAAGATAAAGTCACCGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGCTTCAACAGACGAATCTGTCCTGAAAAATTTGGGACTGCGAACTTGTGACCACGTTATTGTAGCAATCGGAGAAAATAGTCAAGc < 1:1936713/140‑1 (MQ=255) gATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGc > 1:3431659/1‑140 (MQ=255) tGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGa < 1:5761327/140‑1 (MQ=255) aaGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAACATATTCAAGCGAGt > 2:4332488/1‑140 (MQ=255) aGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTAAAGCGAGTATTTTaa > 2:4994782/1‑140 (MQ=255) cAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGa > 2:1453574/1‑140 (MQ=255) cAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGa > 2:3091545/1‑140 (MQ=255) actaaTATGCAAAGATCGCATCCCACGCCGTTATCGGTTATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGAct < 2:7201642/137‑1 (MQ=255) aCGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGAct > 1:6592516/1‑140 (MQ=255) cGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGActc > 2:1030649/1‑140 (MQ=255) cGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGActc > 1:1528364/1‑140 (MQ=255) cGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGActc > 1:6417764/1‑140 (MQ=255) cGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGActc > 2:7544433/1‑140 (MQ=255) taaTATGCAAATATCGCATCCCACGCCGTTATCGTTTATTAAACACAACAATCTGTCATAAAAATTTTGGGTCTGGTAAATTTTGACCACGTTATTGTAGCAATGGTAGAAAATATTAAAGCGAGTATTTTAACGActct < 2:4591932/139‑1 (MQ=255) gAATATGCCACCAGCGCATCCCACGCCGTTATCGGTGATGCAACACTCGAATCGTTGCTGAAAAATTTGGTCCTGCGAAATTTTGACCACGTTCTTTTCCCAACCGGAGAAATTATTCATGCGTGTATTTTAACGActct < 2:5459296/140‑1 (MQ=255) gAATATGCCAAGATCGCATCCCACGCCTTTATCGGTGATTAAACAGACGAATCTTTCGTGAAAAATTTGGGTCTGCTAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCACGCGAGTATTTTAACGActct < 2:136040/140‑1 (MQ=255) gAATATGCAAAGAGCGCATCCCACGCCGTGATCGGTGATTCCACAGACGAATCGGTCCTGAAAAATTTGGGTCTGCGAAATTTGGCCCACGTTTTTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGActct < 2:6622549/140‑1 (MQ=255) atatGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCACTCGGAGAAACTATTCAAGCGAGTATTTTAACGACTCTCa > 1:6342943/1‑140 (MQ=255) tttGCCAAGATCGTATCCCACGCCGTTATCGGTTATTAAACAGACGAACTTGTCCTTAAAATTTTGGGTGTGCTAAATTTTTACCACGTTTTTGTTGCATTCGGATAAAATATTAAAGCGAGTATTTTAACGACTCTCAt < 2:7386573/138‑1 (MQ=255) tttGCAAATATCGCATCCCACGCCTTTATCGTTTATTCAACAGACTAATCTGTCCTTAAAAATTGGGGTCTGCTAAATTTTCACCACGTTATTGTACAAATCGGAGAAAATATTCACGCGAGTATTTTAACGACTCTCAt < 1:3247038/138‑1 (MQ=255) tGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCa > 1:1382641/1‑84 (MQ=255) aaGATCGCATCCCACGCGGTTATGGGTGATTCAACAGACGAATCTGGCCTGAAAAATTTGGGTCTGCGAAATTTTGACCCCGTTATTGTAGCAATCGCAGAAAATATACACGCGAGTTTTTTAACGACTCTCATTCTGaa < 1:2641351/140‑1 (MQ=255) aGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGaat > 1:4567331/1‑139 (MQ=255) aTCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGa > 1:3410561/1‑140 (MQ=255) cGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAAc > 2:6193430/1‑140 (MQ=255) cATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACtt > 2:533130/1‑140 (MQ=255) cATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACtt > 1:6808149/1‑140 (MQ=255) cATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACtt > 1:7268424/1‑140 (MQ=255) aTCCCCCGCCTTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTg < 2:6314709/140‑1 (MQ=255) aTCCCACGCCTTTATAGTTTATTAAACAGACCAATCTGTCCTGAAAAATTTGGTTCTGCTAATTTTTGACCACGTTATTGTACCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTg < 2:4894369/140‑1 (MQ=255) aTCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTg > 1:1752948/1‑140 (MQ=255) aTCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTg < 2:3410561/140‑1 (MQ=255) aTCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTg < 1:7544433/140‑1 (MQ=255) tCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTgg > 2:2202528/1‑140 (MQ=255) caccGCCGTTAGCGTTTATACACCAGACGAATGTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCACGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCg < 2:4054622/137‑1 (MQ=255) aCGCCGTTATCGGTGATTCAACAGACTAATCTGTCATTAAAAATTTGGGTCTGCTAAATTTTGACCACGTTATTGTACCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGtt < 2:2016118/140‑1 (MQ=255) aCGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGtt < 2:4399791/140‑1 (MQ=255) gcggTTATGGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCCCGTTTTTGTAGCAATCGGAGAAAATATTCACGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCa < 1:1541021/137‑1 (MQ=255) gCCGTTATGTGTTATTCAACAGACGAATCTGTCCTTAAAAATTTGGTTCTGCGAAATTTTGACCACGTTTTTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCa < 2:4003694/140‑1 (MQ=255) gCCGTTATCGTTTATACACCAGACGAATCTGTCCTGAAAAATTTGGGTCTGCTAAATTTTGACCACGTTATTGTAGAAATCGGACAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCa < 1:819730/140‑1 (MQ=255) gCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTTTTGTAGCAATCGGAGAAAATATTCAAGCGATTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCa < 1:962192/140‑1 (MQ=255) gCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCa < 2:5247389/140‑1 (MQ=255) gCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCa < 1:4921078/140‑1 (MQ=255) aTCGGTTATTCAACAGACGAATCTGTCCTTAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGATAAAATATTCACGCGAGTTTTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCAt < 1:6972638/140‑1 (MQ=255) aTCGGTGATTCAACAGACTAATCTGTCATTAAAAATTTGGGTGTGCTATATTTTGACCAGTTTATTGTAGCAATCGGAGATAATATACAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCAt < 2:5790975/140‑1 (MQ=255) aTCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCAt > 1:5624152/1‑140 (MQ=255) aTCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCAt < 2:2427717/140‑1 (MQ=255) aTCGGTCATTCAACCCTCTAATGTGTCCTTAAAAATTTGCGTCTGCGAAATTTTGACCTCGTTATTGTAGCATTCGGTGAAAATTTTCTAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCAt < 2:5950552/140‑1 (MQ=255) tCGGTTATTCAAAAGAAGAATCTGTACTTAAAAATTTGGTTCTGAGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCTAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCAtt < 2:4273792/140‑1 (MQ=255) tCGGTTATACAACACACGAATCGGCCCTCAAAAATTGGGGTCGGCGAAATTTTGACCACTTTATTGTAGAAATCGGAGAAAATATTCACGCGTGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCAtt < 1:4548048/140‑1 (MQ=255) tCGGTGATTCAACAGACGAATCTGTCATTAAAATTTTGGTTCTGCCAAATTTTGACCCCGTTTTTGTAGCAATGGGAGAAAATATTCAAGCTAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCAtt < 1:3538618/140‑1 (MQ=255) tCGGTGATTAAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCTAAATTTTGACCACTTTATTGTAGAAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCAtt < 2:1153101/140‑1 (MQ=255) ggTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCGGCGAAATTTTGACCACTTTATTGTAGCAATCGGATAAAATATTCAAGCGTGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCATTAc < 1:2744231/140‑1 (MQ=255) | GCGGTAATTGGACTTGGCCGTTTTGGTGGCAGTATTTGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCGATGGATATCGATGAAGATAAAGTCAACGAATATGCCAAGATCGCATCCCACGCCGTTATCGGTGATTCAACAGACGAATCTGTCCTGAAAAATTTGGGTCTGCGAAATTTTGACCACGTTATTGTAGCAATCGGAGAAAATATTCAAGCGAGTATTTTAACGACTCTCATTCTGAAAGAACTTGGCGTTCATACCATTACAGT > NZ_CP034943/1485652‑1485929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |