| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 2,851,294 | G→T | 6.2% | P60T (CCC→ACC) | murC ← | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,851,294 | 0 | G | T | 6.2% | 1175.2 / 17.0 | 418 | P60T (CCC→ACC) | murC | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| Reads supporting (aligned to +/- strand): ref base G (134/242); new base T (2/39); total (136/282) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.38e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 430 total aligned reads displayed.
ACGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAGCGGACTCATA > NZ_CP034943/2851155‑2851433 | aCGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCggg > 1:3855986/1‑140 (MQ=255) cGGCAACACTAGTGTATTTTTTCATGTAGTCGCCTAAAAACTTTTGAGAACGTATCACCGGAATTCCGTCAGACATGGCTTTGTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGt < 1:3655475/140‑1 (MQ=255) cGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAATAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGt < 1:7376152/140‑1 (MQ=255) cGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTCTGATACCGTATCACCGGAATTCCGTCAGACAGGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGt < 1:5820752/140‑1 (MQ=255) cGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGt < 1:7069755/140‑1 (MQ=255) cGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGt < 1:2291985/140‑1 (MQ=255) cGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGt < 2:670089/140‑1 (MQ=255) cGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGt < 2:6112265/140‑1 (MQ=255) cGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGt < 1:2687226/140‑1 (MQ=255) cGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGAGAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGt < 2:4804867/140‑1 (MQ=255) ggCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGtt < 1:5560485/140‑1 (MQ=255) ggCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGtt < 1:3462102/140‑1 (MQ=255) cacTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGata > 2:1030230/1‑140 (MQ=255) gTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATc > 2:2042761/1‑140 (MQ=255) gTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATc > 2:432285/1‑140 (MQ=255) gTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATc < 1:2552055/140‑1 (MQ=255) gTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATc < 1:1901572/140‑1 (MQ=255) gAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCcg < 2:1430075/140‑1 (MQ=255) ttCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTaaa < 2:3010157/140‑1 (MQ=255) acaaCTTATGATAACGTATCACCGGAATTCCGTCAGACCGGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAata > 1:624376/3‑140 (MQ=255) tATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCtt < 1:7200944/140‑1 (MQ=255) aTGATAACTAATAACCCGAATTCAGTCAGACATGGATTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGAATGTCATGACGGGTTTGATATTATCATAGCTAAAAGGAAGAATCTTAATATTTCttt > 2:5150841/1‑140 (MQ=255) aTGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGGGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAATGGAAGAATCGTAATATTTCttt > 2:4100880/1‑140 (MQ=255) aTGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAAATTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCttt > 2:4030951/1‑140 (MQ=255) cGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAg > 1:7704459/1‑140 (MQ=255) cGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAg > 2:4550460/1‑140 (MQ=255) tCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCt > 2:879745/1‑140 (MQ=255) tCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCt > 2:7097725/1‑140 (MQ=255) aaTTCCGTCAGACATTGCTTTTTCAATTTCAGGATGCGTGTCTGTGAATGCGTTTCCGGCGATGACTGTCATGGCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCg < 2:6465756/140‑1 (MQ=255) aTGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAAttt > 2:4690322/1‑140 (MQ=255) aTGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAAttt > 2:5896452/1‑140 (MQ=255) ggCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAAttttt > 1:475465/1‑140 (MQ=255) ggCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCGGTTTGCGTAAAAATAAAttttt > 2:635906/1‑140 (MQ=255) ggCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTATTTCAAGCGCTGTTTGCGTAAAAATAAAttttt > 1:2161799/1‑140 (MQ=255) cTTTTTCAATTTCAGGATTCGTGTCTGGGAATGCGTTTCCGGCGATGACTTTCATGGCGGTTTTTATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCg < 2:1582025/140‑1 (MQ=255) tttCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGata > 1:7298589/1‑140 (MQ=255) ttCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTAGatat > 2:2271816/1‑140 (MQ=255) ttCAATTTCAGGATGCGTGTCTGGGAATGCGTTACCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGatat > 2:5719512/1‑140 (MQ=255) cAATTTCAGGATGCGTTTCTGGGAATGCGTTTCCGGCGATGACTTTCATGCCTTGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAATTTTTTCGATATcc < 2:1651362/140‑1 (MQ=255) cAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATcc < 1:3882005/140‑1 (MQ=255) cAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATcc < 1:2042761/140‑1 (MQ=255) aattttCAGGATGCTTGTCTGTGATTGAGTTTGCGTCGTGTACTGTCCTGCCTGTTTTGATATTATACGCGCTAAAAGGAAGAATCTTAATATTTCTTTTTTCAAGCGGTGTTTTCGTAAAAATAAATTTTTCGATATcc < 2:243132/137‑1 (MQ=255) aaaTTTCAGGATGCGTTTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGTTTTGATATTATCCGCGCTAATAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATcc < 2:7567969/139‑1 (MQ=255) tttCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGAt > 1:861793/1‑140 (MQ=255) tttCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGAt > 2:3636623/1‑140 (MQ=255) tttCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGAt < 1:6014719/140‑1 (MQ=255) tctcgATGCTTGTCTGTGAATGCGTTTCCTTCGTTTATTGTCATGGCGTTTTTTATATTATCCGCGTTATTAGGAAGATTCGTAATATTTCTTTTTTCAAGCGCTGTTTGCTTTAATATAAATTTTTCGATATCCGATcc < 2:3511445/136‑1 (MQ=255) gATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTGATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTgg < 1:2873658/140‑1 (MQ=255) gATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTgg < 1:1698227/140‑1 (MQ=255) gATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTgg < 1:3124429/140‑1 (MQ=255) tttcGTGTATGGTAATTCGTTTCCTGCGATGACTGTCTTGCCTGTTTTTATATTATCCGCTCTAAAAGTAAGAATCGTTATATTTCTTTTTTGAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 2:5354837/137‑1 (MQ=255) aTGCGTGTCTGTGTATGCTTTTCCTGAGATGTCTGTCATGCCGTGTTTTATATTATCCGCTCTAAAAGGAAGAATCGTAATATTTGTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 2:25663/140‑1 (MQ=255) aTGCGTGTCTGTGAATGCGTTTCCTGCGATGACTGTAATGCCTGGTTTGATATTATCCGCGATAAAAGGAAGAATCTTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCAGATCCTTGGa < 1:432271/140‑1 (MQ=255) aTGCGTGTCTGTGAATGCGTTTCCGGCTATGACTGTCATGCCGTGTTTGATATTATCCGCGCTAAAAGGAAGTATCGTTATATTTCTTTTTTAAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 2:3235966/140‑1 (MQ=255) aTGCGTGTCTGGGATTGCGTTTCCGGCTATGACTTTCATGCCGTGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 2:4169652/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGTAGTTGACTGTCATGCCGGGTTTGATATTATCCGCGCTAATAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 2:5058221/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCTATGACTGTCATGCCGGTTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 2:5438132/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 2:7420311/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 2:7704459/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 2:475465/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:1070352/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:1191370/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:1451274/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:2450130/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:293625/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:3739125/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:4191765/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:7506854/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:4661771/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:480785/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:5150841/140‑1 (MQ=255) aTGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGCCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGa < 1:5410906/140‑1 (MQ=255) gtgtCTGGGAAAGCGTTTCCCGCGTTGACTGTCTTTCCGGTTTTGATATTCTCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCATATCCTTGGACatt < 2:2169266/140‑3 (MQ=255) gtCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGtat < 1:1030230/140‑1 (MQ=255) ggAATGCGTTTCCGGTTTTGTATGTCATGCCTGTTTTTTTTTTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCa < 2:1289700/140‑1 (MQ=255) ggAATGCGTTTCCGGCGATGCCTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCa < 1:566896/140‑1 (MQ=255) attGCGTTTCCGGCGTTTACTTTCATGCGGGTTTTGTTATTATCCTCTCTAAAAGGAAGAATCTTAATATTTCTTTTTTCTAGCGCTGTTTGAGTAAAAATAAATTTTTCGATATCCGATCCTTTGACAGTATATCCAtt < 2:2325238/138‑1 (MQ=255) aaTGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCAtt < 2:6288295/140‑1 (MQ=255) aaTGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCAtt > 2:5598097/1‑140 (MQ=255) cGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCcg > 1:152618/1‑42 (MQ=255) cGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAATCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCa > 2:3809162/1‑140 (MQ=255) cGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCa > 2:2109614/1‑140 (MQ=255) tttCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATg < 1:6722427/140‑1 (MQ=255) tttCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATg < 1:3266136/140‑1 (MQ=255) tCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGaa > 1:663848/1‑140 (MQ=255) ccGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAg > 2:6903255/1‑140 (MQ=255) gTCATGCCTTTTTTTATTTTATCCTCGATAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAg < 2:3731605/140‑1 (MQ=255) gTCATGCCGGGTTTGATATTATCCGCGCTAACAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAg < 1:5771442/140‑1 (MQ=255) gTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGACTCGTAATATGTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAg < 1:4438016/140‑1 (MQ=255) gTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAg < 1:4951403/140‑1 (MQ=255) gTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAg < 1:5004217/140‑1 (MQ=255) gTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAg < 1:2780989/140‑1 (MQ=255) gTCATGCCGGGTTGGATCTTAGCCGCGCTAAAAGGAAGCATCGTACTATTTCTGTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAg < 1:6804763/140‑1 (MQ=255) tCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAGc < 1:1366268/140‑1 (MQ=255) cATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAGCg < 1:7583873/140‑1 (MQ=255) aTGCCGGTTTTTATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAGCgg < 2:2884410/140‑1 (MQ=255) gCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGTGCAAGCGGAc > 2:1264736/1‑140 (MQ=255) gCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAGCGGAc > 2:1770289/1‑140 (MQ=255) ccGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAGCGGACt < 1:4033274/140‑1 (MQ=255) ggTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTg > 1:6535479/1‑95 (MQ=255) | ACGGCAACACTAGTGAATTTTTTCATGTAGTCGCCTAAAAACTTATGATAACGTATCACCGGAATTCCGTCAGACATGGCTTTTTCAATTTCAGGATGCGTGTCTGGGAATGCGTTTCCGGCGATGACTGTCATGCCGGGTTTGATATTATCCGCGCTAAAAGGAAGAATCGTAATATTTCTTTTTTCAAGCGCTGTTTGCGTAAAAATAAATTTTTCGATATCCGATCCTTGGACAGTATATCCATTATCATGAAGTATTTGGGCAAGCGGACTCATA > NZ_CP034943/2851155‑2851433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |