| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,243,010 | T→A | 5.0% | V650E (GTG→GAG) | manP → | PTS mannose transporter subunit IIABC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,243,010 | 0 | T | A | 5.0% | 889.9 / 23.9 | 259 | V650E (GTG→GAG) | manP | PTS mannose transporter subunit IIABC |
| Reads supporting (aligned to +/- strand): ref base T (120/124); new base A (8/5); total (129/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 273 total aligned reads displayed.
GTACCGAAAGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTT > NZ_CP034943/1242871‑1243149 | aCCGAAAGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGCAGCATACAAGCTGCTGGATGAAATCgtgt < 1:2140639/140‑1 (MQ=255) ccGAAAGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTa < 1:2823028/140‑1 (MQ=255) ccGAAAGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTa < 2:310690/140‑1 (MQ=255) cGAAAGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAg > 2:1008232/1‑140 (MQ=255) cGAAAGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAg > 2:1726128/1‑140 (MQ=255) cGAAAGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAg > 2:1788957/1‑140 (MQ=255) aaaGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTg > 1:3069174/1‑140 (MQ=255) aaaGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTg > 1:1508207/1‑140 (MQ=255) gagCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCgggg > 2:2530892/1‑140 (MQ=255) gagCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCgggg > 2:3194011/1‑140 (MQ=255) gagCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATCATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCgggg > 2:1353512/1‑140 (MQ=255) gCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCgggggg < 2:92296/140‑1 (MQ=255) gCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCgggggg > 2:1965954/1‑140 (MQ=255) gCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCgggggg < 2:3334796/140‑1 (MQ=255) cGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCGATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGa > 2:2723694/1‑140 (MQ=255) aaCCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACACAAGAAGCAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCAt < 1:2626773/140‑1 (MQ=255) cATCTCAAAATACTGCAGATGCTATCTCGAAAGCTAATGGATGACAATTATAGGGAGCGGCTGCTCTCCGTGCAAACAACAGAAGAAGCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATgacgact > 2:1216218/1‑139 (MQ=255) cATCTCAAAATACTGCAGATGCTATCTCGAAAGCTAATGGATGACAATTATAGGGAGCGGCTGCTCTCCGTGCAAACAACAGAAGAAGCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATgacgact > 2:3847221/1‑139 (MQ=255) tCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCAt < 1:2266543/132‑1 (MQ=255) tCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAg > 1:1007745/1‑140 (MQ=255) tGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCTGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGAGGACAGaa > 2:2079457/1‑140 (MQ=255) tGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGaa > 2:3476081/1‑140 (MQ=255) aaTATTGCAGATGTGATCCCGAAAACGAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGAGGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGt < 2:325144/140‑1 (MQ=255) tatTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTa < 1:2894350/140‑1 (MQ=255) tatTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTa < 1:3048684/140‑1 (MQ=255) tatTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGCGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTa < 1:945492/140‑1 (MQ=255) tGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCgtgt < 1:1926681/102‑1 (MQ=255) tGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCTTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTAttt > 2:616409/1‑140 (MQ=255) tGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCAt > 1:891323/1‑121 (MQ=255) tGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTAttt > 1:3509848/1‑140 (MQ=255) tGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTAttt > 1:653153/1‑140 (MQ=255) ggaGATGTTATCCCGAAAACTTATGGATGATAGGTATAGGACGCAGCTTCTCTCCGTGCACACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTCGTGCGGGGGGCTATTCATTAGGAGAGAACCGTTAtttt > 1:2970330/3‑140 (MQ=255) gCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGACGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTAtttt > 2:1422049/1‑140 (MQ=255) gCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTAtttt > 1:1226725/1‑140 (MQ=255) aGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTc > 1:1083768/1‑140 (MQ=255) ttATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGcc < 2:599185/140‑1 (MQ=255) aTCTCGAAAGCTAATGGATGACAATTATAGGGAGCGGCTGCTCTCCGTGCAAACAACAGAAGAAGCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATGACGACTGAACCGTTATTTTTCAAGCCTGt > 2:126185/1‑140 (MQ=255) aTCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTg > 2:538417/1‑140 (MQ=255) aaaaCTAATGGATGATAGCTATAGGAAGCAGCTGCACTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCa > 2:3681175/1‑140 (MQ=255) tAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAagag < 2:2982280/140‑1 (MQ=255) tAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAagag < 1:781643/140‑1 (MQ=255) tAATCGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAATCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAagag < 2:2221137/140‑1 (MQ=255) atgagAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAACGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGAtt < 2:2500423/140‑1 (MQ=255) gatAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTg > 1:3798205/1‑140 (MQ=255) gatAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTg > 1:1821652/1‑140 (MQ=255) tAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCg > 2:3056204/1‑77 (MQ=255) tAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTggg > 2:791713/1‑140 (MQ=255) tAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTggg > 2:3388342/1‑140 (MQ=255) aGGAAGCAGCTGCTCTCCGTTCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTAc < 2:449178/140‑1 (MQ=255) aGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTAc < 2:3305/140‑1 (MQ=255) aGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAAGCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTAc > 2:2956277/1‑140 (MQ=255) aaGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGAGTTGGGGCGGTACCGc > 2:3653901/1‑140 (MQ=255) agcagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCt > 1:333166/1‑140 (MQ=255) gcagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTg < 2:216982/63‑1 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:850569/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:2439035/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:1219760/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:1615/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:749817/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 1:1015004/1‑140 (MQ=255) agcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTa > 2:1877186/1‑140 (MQ=255) gctgctCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTAt < 1:1424870/140‑1 (MQ=255) ctctCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTAc > 1:2981556/1‑128 (MQ=255) ctcCGTGCAAACAAAATAAGACGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGAGTTGGGGCGGTACCGCTTTATCGGCtt < 1:1353512/140‑1 (MQ=255) ccGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTc < 2:1508207/140‑1 (MQ=255) gTGCACACAAAAGAAGAAGCATACACGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGACAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCgg < 1:1331048/140‑1 (MQ=255) gTGCAAACAAAAGAAGAAGCATACACGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCgg < 1:170869/140‑1 (MQ=255) gTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCgg < 1:2715766/140‑1 (MQ=255) gTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCgg < 1:808342/140‑1 (MQ=255) gTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCgg < 1:3622272/140‑1 (MQ=255) aaacaaaAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGTGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTAt < 2:1953763/140‑1 (MQ=255) aaacaaaAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTAt < 2:1989826/140‑1 (MQ=255) aaaaGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATcaca < 2:1385645/140‑1 (MQ=255) aaaaGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATcaca < 2:1799423/140‑1 (MQ=255) gaagaagCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATGACGACTGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAAAGAATTTGGGGCGGGACCGCTTTAGCTGATTTTGGCTATACCATTCCg < 1:1216218/140‑1 (MQ=255) gaagaagCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATGACGACTGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAAAGAATTTGGGGCGGGACCGCTTTAGCTGATTTTGGCTATACCATTCCg < 1:3847221/140‑1 (MQ=255) gaagaagCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATGACGACTGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAAAGAATTTGGGGCGGGACCGCTTTAGCTGATTTTGGCTATACCATTCCg < 1:2505413/140‑1 (MQ=255) gCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAga < 1:3451992/140‑1 (MQ=255) gCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAga < 1:1281620/140‑1 (MQ=255) ccaGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAgaacgaa < 2:1465277/138‑1 (MQ=255) cAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAGGAGAGGAGGTGGGGCGGTCCCGCTTTATCGGCTTTCGGCTATCCCATTCCGTGAgtccgac > 1:2235922/1‑134 (MQ=255) cAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAgaacgaa < 2:360176/140‑1 (MQ=255) gctgctGGATGAAATGGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTACGTCAGAACGAACAg > 1:43227/1‑140 (MQ=255) gctgctGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAg > 1:539044/1‑140 (MQ=255) gctgctGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAg > 1:339726/1‑140 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCAGCTTCCGTCAGAACGAACAggg < 1:1582628/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 1:1334924/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 2:2587852/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 1:3181017/140‑1 (MQ=255) gctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGAtt > 2:881654/1‑82 (MQ=255) gctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAgggg > 1:2054491/1‑140 (MQ=255) gctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAgggg > 2:3529704/1‑140 (MQ=255) gATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGCGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTg < 2:286286/140‑1 (MQ=255) aTGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGc < 1:3114836/140‑1 (MQ=255) gAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTg > 1:13101/1‑140 (MQ=255) gAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTg < 1:24315/140‑1 (MQ=255) tCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCt > 2:1167308/1‑140 (MQ=255) tgtAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAATGAGAGGATTTGGGGCTGTACCGATTTATCGGCTTTCGGCTATCACATTCCGTCAGAACTAACAGGGGAGTGCTGTGCtttt > 2:2332408/1‑140 (MQ=255) tgtAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCtttt > 2:279568/1‑140 (MQ=255) tgtAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCAGTAAGAACGAACAGGGGCGTGCTGGGCtttt > 2:2269312/1‑140 (MQ=255) | GTACCGAAAGAGAGCGAAGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTT > NZ_CP034943/1242871‑1243149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |