| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,243,026 | A→T | 5.6% | intergenic (+12/‑4) | manP → / → manA | PTS mannose transporter subunit IIABC/mannose‑6‑phosphate isomerase, class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,243,026 | 0 | A | T | 5.6% | 818.8 / 27.4 | 242 | intergenic (+12/‑4) | manP/manA | PTS mannose transporter subunit IIABC/mannose‑6‑phosphate isomerase, class I |
| Reads supporting (aligned to +/- strand): ref base A (115/113); new base T (7/7); total (122/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 260 total aligned reads displayed.
AGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTTGCTGCTCATAAAAAC > NZ_CP034943/1242888‑1243164 | aGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAACCAAAAGAAGAAGCCTACAAGCTGCTGGCTGACATCGGGGCGTGCGGGGGGatat > 1:3225988/1‑140 (MQ=255)aGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGatat > 1:3347938/1‑140 (MQ=255)aGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGCGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGatat > 1:1842086/1‑140 (MQ=255) aaCCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCAt < 1:1014271/140‑1 (MQ=255) aaCCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCAt < 2:350923/140‑1 (MQ=255) aaCCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCAt < 2:622080/140‑1 (MQ=255) aaCCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCAt < 2:508338/140‑1 (MQ=255) cATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATgacgac > 2:694665/1‑140 (MQ=255) cATCTCAAAATACTGCAGATGCTATCTCGAAAGCTAATGGATGACAATTATAGGGAGCGGCTGCTCTCCGTGCAAACAACAGAAGAAGCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATgacgact > 2:1216218/1‑139 (MQ=255) cATCTCAAAATACTGCAGATGCTATCTCGAAAGCTAATGGATGACAATTATAGGGAGCGGCTGCTCTCCGTGCAAACAACAGAAGAAGCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATgacgact > 2:2505413/1‑139 (MQ=255) tCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAg > 1:1007745/1‑140 (MQ=255) aaTATTGCAGATGTGATCCCGAAAACGAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGAGGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGt < 2:325144/140‑1 (MQ=255) tatTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTa > 2:3605101/1‑140 (MQ=255) tGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCACACAAAAGAAGAAGCATACACGCTGCTGGATGAACTCGTGTAGTGCGGGGGGATATACATGACGAGAGAACCGTTAttt > 2:3310483/1‑140 (MQ=255) tGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTAttt > 1:653153/1‑140 (MQ=255) tGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTAttt > 1:3509848/1‑140 (MQ=255) tGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTAATGACTACAGAACCGTTAttt > 2:3370363/1‑140 (MQ=255) ggaGATGTTATCCCGAAAACTTATGGATGATAGGTATAGGACGCAGCTTCTCTCCGTGCACACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTCGTGCGGGGGGCTATTCATTAGGAGAGAACCGTTAtttt > 1:2970330/3‑140 (MQ=255) gCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTAtttt > 1:1226725/1‑140 (MQ=255) aGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTc > 1:3792520/1‑140 (MQ=255) aGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTc > 2:1424870/1‑140 (MQ=255) aGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTc > 1:1083768/1‑140 (MQ=255) ttATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGcc < 2:2691069/140‑1 (MQ=255) aTCTCGAAAGCTAATGGATGACAATTATAGGGAGCGGCTGCTCTCCGTGCAAACAACAGAAGAAGCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATGACGACTGAACCGTTATTTTTCAAGCCTGt > 2:126185/1‑140 (MQ=255) aTCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTg > 1:874109/1‑140 (MQ=255) aaaaCTAATGGATGATAGCTATAGGAAGCAGCTGCACTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCa > 2:3681175/1‑140 (MQ=255) tactGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAagag < 1:318065/137‑1 (MQ=255) tAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAagag < 1:781643/140‑1 (MQ=255) tAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAagag < 1:2394091/140‑1 (MQ=255) tAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAagag < 1:1264719/140‑1 (MQ=255) tAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAagag < 2:2982280/140‑1 (MQ=255) tAATCGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAATCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAagag < 2:2221137/140‑1 (MQ=255) tAGCTATAGGAAGCAGCTTCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTggg > 2:3211628/1‑140 (MQ=255) taGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTa > 1:1287774/1‑140 (MQ=255) aGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAAGCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTAc > 2:2956277/1‑140 (MQ=255) ggAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTAcc < 1:3544477/140‑1 (MQ=255) agcagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCt > 2:1648347/1‑140 (MQ=255) agcagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCt > 1:930706/1‑140 (MQ=255) gcagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCtt > 1:3459638/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:1487433/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:2439035/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:1405088/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:749817/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:850569/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 2:342757/1‑140 (MQ=255) cagcTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCttt > 1:2105383/1‑140 (MQ=255) ctctCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTAc > 1:796470/1‑128 (MQ=255) ctcCGTGCAAACAAAATAAGACGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGAGTTGGGGCGGTACCGCTTTATCGGCtt < 1:1353512/140‑1 (MQ=255) ctcCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCtt < 1:2530892/140‑1 (MQ=255) cGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCg > 2:393756/1‑140 (MQ=255) gTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCgg < 1:1329983/140‑1 (MQ=255) aaacaaaAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGTGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTAt < 2:1953763/140‑1 (MQ=255) aaacaaaAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTAt < 2:1989826/140‑1 (MQ=255) aaaaGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATcaca < 2:3069174/140‑1 (MQ=255) aaaGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGTGATATTCATGACGACGGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACAt < 2:3638839/140‑1 (MQ=255) gaagaagCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATGACGACTGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAAAGAATTTGGGGCGGGACCGCTTTAGCTGATTTTGGCTATACCATTCCg < 1:2505413/140‑1 (MQ=255) gaagaagCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATGACGACTGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAAAGAATTTGGGGCGGGACCGCTTTAGCTGATTTTGGCTATACCATTCCg < 1:3847221/140‑1 (MQ=255) gaagaagCATACAAGCTGCTAGAAGAAATCGAATAAAGC‑GGGGGATTTTCATGACGACTGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAAAGAATTTGGGGCGGGACCGCTTTAGCTGATTTTGGCTATACCATTCCg < 1:1216218/140‑1 (MQ=255) gCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTgggg > 1:1440224/1‑98 (MQ=255) gCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAga < 2:599228/140‑1 (MQ=255) gCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAga < 1:2888942/140‑1 (MQ=255) gCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAga < 2:1821652/140‑1 (MQ=255) gCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAga < 1:1959894/140‑1 (MQ=255) gCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAga < 2:3798205/140‑1 (MQ=255) gCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCATGTTTTCAAAGAGAGGATTTGTGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAga > 2:1511479/1‑140 (MQ=255) cAAGCTGCTGGATGAACTCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAgaacgaa < 2:357672/140‑1 (MQ=255) cAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAGGAGAGGAGGTGGGGCGGTCCCGCTTTATCGGCTTTCGGCTATCCCATTCCGTGAgtccgac > 1:2235922/1‑134 (MQ=255) cAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAgaacgaa < 2:874109/140‑1 (MQ=255) cAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAgaacgaa < 2:2108254/140‑1 (MQ=255) cAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAgaacgaa < 1:3853630/140‑1 (MQ=255) cAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAgaacgaa < 1:2821953/140‑1 (MQ=255) gctgctGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAg > 1:539044/1‑140 (MQ=255) tgcttGATGAAATCGTGTAGGGCGGGGGGATATTCATGACGACCGAACCGTTATTTTTCAAGCCTGTCTTCAAAGCGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 1:969888/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 2:2587852/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 1:1334924/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 1:154853/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 1:1648347/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 1:3211628/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 1:300311/140‑1 (MQ=255) tgctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 1:2979872/140‑1 (MQ=255) ggctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAggg < 2:786188/139‑1 (MQ=255) gctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAgggg > 2:893456/1‑140 (MQ=255) gctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAgggg > 2:1794030/1‑140 (MQ=255) gctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAgggg > 1:2054491/1‑140 (MQ=255) gctgGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAgggg > 1:3437650/1‑140 (MQ=255) gatgttaTCGTGTAGTGCTGTGGGATTTTCATGACGACAGAAGCGTTATTTTTCAAGCGTGTTTTCACAGAGTGGATTTGGGGCGGTACCTCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTg < 2:3354195/134‑1 (MQ=255) aTGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGATGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGc < 2:1380264/140‑1 (MQ=255) aTGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGc < 2:58447/140‑1 (MQ=255) aTGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGc < 1:3114836/140‑1 (MQ=255) tCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCt > 2:1167347/1‑140 (MQ=255) tgtAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAATGAGAGGATTTGGGGCTGTACCGATTTATCGGCTTTCGGCTATCACATTCCGTCAGAACTAACAGGGGAGTGCTGTGCtttt > 2:2332408/1‑140 (MQ=255) tgtAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCtttt > 2:279568/1‑140 (MQ=255) tgtAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCAGTAAGAACGAACAGGGGCGTGCTGGGCtttt > 2:2269312/1‑140 (MQ=255) cGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTa < 2:1220941/71‑1 (MQ=255) cGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTTGCTGCTc > 1:102231/1‑140 (MQ=255) cGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTTGCTGCTc > 1:271239/1‑140 (MQ=255) cGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTTGCTGCTc > 2:2890345/1‑140 (MQ=255) gATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTTGCTGCTCATaaaa < 1:1726128/140‑1 (MQ=255) tatTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTTGCTGCTCATAAAAAc > 1:2277575/1‑140 (MQ=255) tatTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTTGCTGCTCATAAAAAc > 1:94601/1‑140 (MQ=255) | AGGGAACCAGCATCTGAAAATATTGCAGATGTTATCCCGAAAACTAATGGATGATAGCTATAGGAAGCAGCTGCTCTCCGTGCAAACAAAAGAAGAAGCATACAAGCTGCTGGATGAAATCGTGTAGTGCGGGGGGATATTCATGACGACAGAACCGTTATTTTTCAAGCCTGTTTTCAAAGAGAGGATTTGGGGCGGTACCGCTTTATCGGCTTTCGGCTATCACATTCCGTCAGAACGAACAGGGGAGTGCTGGGCTTTTGCTGCTCATAAAAAC > NZ_CP034943/1242888‑1243164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |