| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,562,015 | A→C | 11.2% | intergenic (‑661/‑137) | EO946_RS18300 ← / → EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,562,015 | 0 | A | C | 11.2% | 552.8 / 2.9 | 238 | intergenic (‑661/‑137) | EO946_RS18300/EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base A (127/65); new base C (2/40); total (129/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.99e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 238 total aligned reads displayed.
ATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATCA > NZ_CP034943/3561879‑3562152 | aTCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAggg < 1:2886796/140‑1 (MQ=255) tCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGt < 1:2652633/140‑1 (MQ=255) cACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATAAACGAGCTGTTTTACGCTTCACCAGGGTGACa > 2:3152359/1‑140 (MQ=255) cgtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGaa > 1:3655548/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 1:352262/1‑140 (MQ=255) gTGCAAATCGCATCACTTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 1:2805571/1‑140 (MQ=255) tGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCATATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAAt > 1:3494048/1‑140 (MQ=255) tGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGt > 1:2977373/1‑118 (MQ=255) tGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGt < 2:2977373/118‑1 (MQ=255) tGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAAt > 1:640612/1‑140 (MQ=255) tGCAAATCGCATCTATTTTAATGGCCAAGTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGAGTTTATAGCGCAAAACAGACCATATACGCGCTTTTTTACGGTTCACAAGGGTGACAATGACCTTGTGGTACact > 1:3008821/1‑138 (MQ=255) gCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAAtt > 1:1641254/1‑140 (MQ=255) cAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAAttt > 2:1418171/1‑140 (MQ=255) cAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAAttt > 2:2704725/1‑140 (MQ=255) cGCATCTATTTTAATGTCCAATTAATAGGACAAAGCGGTAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTAAGCTTCACAAGGGTGACAATGAACTAGTGGTACAATATTCaat > 2:1869463/1‑139 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACtt > 1:396877/1‑140 (MQ=255) tttAATGTCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACACACCATATACGAGCTTTTTTACGCTACACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGCaaa < 2:1950905/140‑1 (MQ=255) aTGGCCAATTAATCGCAAAACGCGGAAGCCCTTCAAATAAACCTTATTTTATAGCCCAACACAGCCCATATACCAGCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACg < 2:1130427/140‑1 (MQ=255) gCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAAAGCCg > 2:2868737/1‑140 (MQ=255) gCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTAAGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCg > 2:622615/1‑140 (MQ=255) attgcaCAAAGCGGAAGCCCTCAAAAAAAACCTGATTTTATAGCGCAAAACACACCATATACGACCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTgggg < 2:2278081/135‑1 (MQ=255) aTAGGACAAAGCGCAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTACAAACTTCGGAAACACGCCGGGGTgggg < 2:310162/140‑1 (MQ=255) aTAGCAAAAAGCGGAACCCCTTAAAATAAACCTGATCTTAGAGCCAAAAACACACCAGATACGAGCTTTATTACGCTTCCCAAGGGTGACAATCAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTgggg < 1:1524508/140‑1 (MQ=255) aGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGaa > 1:311030/1‑140 (MQ=255) aCAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCg > 2:2760340/1‑140 (MQ=255) aacgCGGAAGCCATTCAAAAAAACATGATTTTATAGCGCAAAACACCCAATATACGCGCTTTTTTCCGCTTCACCCGGGTGACAATGAACTTGTGCTACAATTTTCAACCTTCGGAAAAACGCCGGGGTGGGGAATCGCa < 2:1815775/137‑1 (MQ=255) aaaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa > 1:2733431/1‑140 (MQ=255) aaaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACCAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCAGGGGTGGGGAATCGCa > 2:2444295/1‑140 (MQ=255) aaaGCGGAAGCCCTTAAAATAAACCTGATTTTATCGCGCAAAACACACCATATACGAGCTTTTTTACGCTTCACACGGGGGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa < 2:3257184/140‑1 (MQ=255) aaaGCGGAAGCCCTACAAATAAACCTGATTTTATAGCGCAAAACAGACCATATCCGAGATTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa < 2:2141616/140‑1 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 2:3552649/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 1:1040754/1‑140 (MQ=255) acgCCCTTCAAATAAACGTGATTTTATAGCGCACAACATACCATATACGAGCTTTTTGACGCTTCGCAAGGGTGACAATGAACTTGTGGTAGAATTTTCAATCTTCGGAAAAACGCCGGGGTGGGGAATCGGAATGCCGa > 2:248006/3‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGa > 1:2008047/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGa > 2:1054930/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGa > 2:3320750/1‑140 (MQ=255) atcacTTCAAATAAACCTGATTTTATCGCGCAAACCACACCATCTACTAGCTTTTTTACTCTTCACACGGTTGACAATCAACTTGTGGTACATTTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 1:3477380/136‑1 (MQ=255) aGCCCTAAAAATAAACTTTTTTTTATAGCGCAAAACCCCCCATTTACGAGATTTTTTACGCTTCAAACGGGTCAAATTTAATTTGTGTTACATTTTACAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 1:1870226/140‑1 (MQ=255) aGCCATTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATCAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 2:2746519/140‑1 (MQ=255) ccTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTAc < 2:834123/140‑1 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGTGTGGGGAATCGCAAAGCCGATTACttt > 1:1026497/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 1:719839/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACtgt > 2:702041/1‑138 (MQ=255) tAAACCTGATTTTTTTGCGCAAAACAGACCTTATACTAGCTTTTTTACGCTTCACAAGGGTTACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 2:1168293/140‑1 (MQ=255) tAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 2:667972/140‑1 (MQ=255) tAAACCTGATTTTATAGCGCAAAACACACCAAATCCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGGGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 2:1654054/140‑1 (MQ=255) tAAACATGATTTTATAGCCAAAAACCGACCATATCCGAGCTTTTTTACGCTTCACAAGGGTGAAAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 2:3207526/140‑1 (MQ=255) aaaaCCTGTTTTTATAGCCCAAAACACACCATATACGAGTTTTTTTCCGTGTCACATGGTTTACATTTAATTTGTGTTAAAATTTCCAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 1:2334649/139‑1 (MQ=255) aacgttaTTTTATAGCGCAAAACAGCCCCTATCCGAGCTTTTTTCCGCTTCACACGGGTCACAATCAACTGGGGGTACAATTTTCAAACTGCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:2610603/134‑1 (MQ=255) aacattaTTTTATAGCCCAAACCACACCATATACGAGCTTTTTTCCGCTTCACACGGGTGACAATTAACTTGTGGTAAATTTTTCAAACTGCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1083302/134‑1 (MQ=255) aaCCTTATTTTATCGCGCAAAACAGACCATATACGTGCTTTTTTACGATACACATGGGTGACATTGAAGTTTTTTTACAATTTACAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1104999/140‑1 (MQ=255) aaCCTTATTTTATAGCCCAAAACAGACCATATCCGAGCTTTTTTACGCTTCACACGGGTGAAAATGAACTGGTGGTACAATTTAAAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:178145/140‑1 (MQ=255) aaCCTGATTTTATCGCGCAAAACCGACCATATCCGCGCTTTTTTCCGCTTCACAAGGGTCACAATGAAGTGGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1157000/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACAGACCATATCCGCGCTTTTTTACGCTTCCCACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:241218/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACAGACCATATCCGAGCTTTTTTACGCTTCACAAGGGTGACAATTAACTTGTGGTACATTTTTCAAAGTTGGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:1990606/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACATTTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:1381335/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACACCCCCTATCCGAGCTTTTTTACGCTTCACACGGGTTACAATGACCTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:3674807/140‑1 (MQ=255) gATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTAGTGTTGGAACGCAgca > 1:1560050/1‑138 (MQ=255) gATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCCCAAAGCCGATTACTTTTGGAACGCAGGa > 2:3332975/1‑140 (MQ=255) aTTTTATTGCCCAAAACATACCATATCCGAGCTTTTTTACGTTTCACCCGGGTGAAATTCAACTTGTGTTACAATTTACAAACTTCGGAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:1836191/140‑1 (MQ=255) aTTTTATCCCGCAAAACCCACCATATACGAGATTTTTAACGCTTCACACGGGTGCCAATGAACTTGTGGTACAATTTCCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:3437952/140‑1 (MQ=255) aTTTTATAGCGCAACACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACATTTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 2:2650321/140‑1 (MQ=255) aTTTTATAGCGCAAAACATCCCTTATACGAGCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 2:164073/140‑1 (MQ=255) aTTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:654023/134‑1 (MQ=255) aTTTTATAGCGCAAAACAGACCATACACGAGCTTTTTTACGCTTCCCCAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 2:757578/140‑1 (MQ=255) ttaagaGCGCAACACACACCAGACACGAGCTTTTTTACGCTTCACAAGCCTGACAATGAACTTGTGGTACAATTTTAAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:12072/135‑1 (MQ=255) ataGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACat > 2:1756469/1‑140 (MQ=255) ataGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACat > 2:41917/1‑140 (MQ=255) ataGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACat > 2:3630183/1‑140 (MQ=255) aGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt > 1:1698110/1‑114 (MQ=255) gcAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGc > 1:209981/1‑140 (MQ=255) gcAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGc > 1:1755306/1‑140 (MQ=255) gcAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGc > 1:210696/1‑140 (MQ=255) cAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTCCAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTATTGGAACGCAGGATAACATATTGCg > 2:1279223/1‑140 (MQ=255) cAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCg > 2:45221/1‑140 (MQ=255) cAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAGTAGTTTTGGAACGCAGGATAACATATTGCg > 1:1301393/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGTGTGACAATGAACTTGTGGTCCAATATTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATAGCGAGAGAAcc > 2:2229567/1‑139 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGACCa > 1:2639938/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 2:2038012/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 1:3776725/1‑140 (MQ=255) ataCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAACAtt > 1:3059955/1‑140 (MQ=255) ataCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAAtt > 2:3756596/1‑140 (MQ=255) ataCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAAtt > 1:2701908/1‑140 (MQ=255) gAGCTTTTTTACGCTTCACAAGGTTGACAATGAACTTGTGGTAAAATTTTCAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCt < 2:3408445/140‑1 (MQ=255) aGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACACAATTTCCtt > 1:2280502/1‑140 (MQ=255) aGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCtt > 1:2505507/1‑140 (MQ=255) aGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCtt > 1:797494/1‑140 (MQ=255) cTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCCATTACTTTTGCAACTCAGGATAACATATTGCGAGAGAACAAAAATTCCTTTc > 2:2302220/1‑140 (MQ=255) ttttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCt > 1:440507/1‑140 (MQ=255) tttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCATACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCtt > 2:784249/1‑140 (MQ=255) tttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCtt > 1:2938179/1‑140 (MQ=255) tttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCtt > 1:584036/1‑140 (MQ=255) ttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTa > 1:3167058/1‑140 (MQ=255) ttttACGCTTCACAAGGGTGAAAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTa < 2:495577/140‑1 (MQ=255) ggttCACACGGGTGAAAATTAACTTGTGGTACAATTTTCAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGAtt < 2:2321138/138‑1 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGGTTACTTTTGGAACg > 1:1681632/1‑90 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg > 1:2473453/1‑90 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGactgtct > 1:1914442/1‑134 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAAt > 1:2329634/1‑140 (MQ=255) caAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATCa < 2:2598373/140‑1 (MQ=255) | ATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATCA > NZ_CP034943/3561879‑3562152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |