| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 316,262 | C→A | 7.5% | Q28K (CAA→AAA) | opuAA → | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 316,262 | 0 | C | A | 7.5% | 1577.4 / 25.6 | 643 | Q28K (CAA→AAA) | opuAA | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Reads supporting (aligned to +/- strand): ref base C (383/188); new base A (3/68); total (386/257) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.73e-26 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 654 total aligned reads displayed.
GTGTGGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAC > NZ_CP034943/316123‑316401 | gtgtgGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATAGGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTc > 1:7227363/1‑140 (MQ=255) tgGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCaaa > 2:7184965/1‑140 (MQ=255) tgGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCaaa > 1:4939414/1‑140 (MQ=255) tgGAATGTTACATAAGTGCTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGAAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGTAAACAAACAAAGAAAGCAGTTCaaa > 2:1552007/1‑140 (MQ=255) ctGTTACATAAGTGTTACGGTGATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATCAAAGTCGAGCAAGGATCTACAATTTTTGGGAAACAAACAAAGAAGGCAGTTCAAATGCt > 1:2306002/2‑140 (MQ=255) aTGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAATAAAGCAGTTCAAATGCt > 1:5622683/1‑140 (MQ=255) gtgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTCTCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGaa > 1:1647615/1‑140 (MQ=255) gtgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGaa > 1:3291580/1‑140 (MQ=255) tgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGaac > 2:4312924/1‑139 (MQ=255) ttACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTATAGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGa > 1:7475281/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTAGCTAGAGTTTTTGGGAAACAAACACAGAAAGCAGTTCAAATGCTTGCCAACGGCAAGAcc > 2:7048916/1‑139 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGACGAGGAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACa > 2:411157/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACaaaaaaa > 2:3104871/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACaaaaaaa > 1:5960769/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACaaaaaaa > 2:132156/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTAGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACaaaaaaa > 2:6492844/1‑140 (MQ=255) aaGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAaga < 1:2175586/140‑1 (MQ=255) aaGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAaga < 2:1629823/140‑1 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAATTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTACAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 2:4834521/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAATCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 2:1386996/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCTGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:2811600/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:802429/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 2:1784062/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:109838/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:3880359/1‑140 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACATACAAAGACAGCCGTTCAAATGCTTGCCAACGGCCTGAGACACAAAGAGATCCGGa > 2:5227331/1‑140 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTc < 1:4380150/101‑1 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTc > 2:4380150/1‑101 (MQ=255) tGGAGGTAAAATATTTTTGTAGATGATAAACAAATTAAGATAAAAGTCTAGAAATTATCTAAAATTTTTGGCAAACAAACAAAGAAACCAGTTCAAATGCTTGCCAACGGAACCACAAAAAAAGAGATCCTGAAAGCGAc < 2:103886/140‑1 (MQ=255) gggAGGGAAAATATGAGTGTATATCAGAAACAAATTAATATAAAAGTCGAGAAAGTATCTAAAATTTTTGGTAAAAAAACAAATAAAGCATTTAAAATGCTTGCCAACGCAAAGAAAAAAAAAGAGATCCTGAAAGCGAc < 2:855905/139‑1 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAACGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:6579489/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGa > 2:6334972/1‑112 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACACAAAAAGAGATCCTGAAAGCGACCgg > 2:4904946/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:4620757/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:7275020/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:1231329/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:3341499/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:3156826/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:6664880/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgc > 1:2566601/1‑139 (MQ=255) aGGGAAAATATGAGGGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGGATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTTCCCACGGAAAGACAAAAAAAGAGATCCTGACAGCGACCgg > 1:2984031/1‑140 (MQ=255) caaaaTATTCGTCCAGATCACAACCCAATAAACAAAAAAGTCGAGAACGTATATAAAATTTTTGCGAAACACACAAACAAACCAGTAAAAAAGCTGGCCAACGCAAACACAAAAAAACAAATCCTGAAAGCGACCGGATc < 2:2649782/139‑1 (MQ=255) caaaaTATGAGTGTAGATTAGAACACAATTAACATAAAAGTCCACAAAGTATCTAAAATTTTTGGGAAACAAACAAACAAAGCAGTTAAAATGCTTCCCAACGGAAACACAAAAAAAGAGAACCTGAAAGCGACCGGATc < 2:6417469/139‑1 (MQ=255) aaaTATGAGTGTAGAGGAGAAACCAATTAAGATACAAGTCGAGAAAGTATCTAAAATTTTTGGGCAACAAACAAAGAAAGCAGTTCAATTGCTTGCCAACGGAAAGAGACTAAAAGAGATCCTGAAAGCGAGCGGCTCag > 1:1000992/1‑139 (MQ=255) ttgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAATTATCTAAAATTTTTGGGAAACAAAAAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTggg < 2:2991787/139‑1 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:6134398/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:695045/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAACAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 2:6826635/1‑140 (MQ=255) tAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTa > 2:1223978/1‑140 (MQ=255) tAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTa > 2:2028089/1‑140 (MQ=255) gATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGACAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCCACCGTGGGGGTaaa > 1:6488585/1‑140 (MQ=255) aTGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAAt > 2:1966199/1‑140 (MQ=255) gaAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAg > 1:3401884/1‑140 (MQ=255) caaaCAAATAAACATAAAAGTCTACAAAGTAACTAAAATTTTTGGGAAACAAACAAAGAAAGCCGTTCAAATCCTTGCCAACGCAAAGAAAAAAAAAGACACCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAg < 2:2160924/139‑1 (MQ=255) aaaCCAATTACGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTGGCCAACGGACAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCACCCGTTGGGGTAAATCAAGc > 2:6627569/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACACACAAAGAAAGCAGTTCAAATGCTTGCCAACGGACAGAGAAAAAAAGAGATCCTGCACGAGACCGGATCAACCGTGGGGGTCACTCAGGc > 1:6262918/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 2:1130269/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:4046886/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:3621603/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAACAAAGCAGTTCAAATGCTTGCCACCGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 2:7364279/140‑1 (MQ=255) aaTTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtt > 1:194660/1‑140 (MQ=255) ttAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtttt > 1:759963/1‑140 (MQ=255) ttAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtttt > 1:5110405/1‑140 (MQ=255) tactaTAAAAGCCGAGAACGTATAAAAATTGTTTGGCAAACAAACAAACAACGCCGTTCAAATGCGGCCAAACGCAAACACAAAAAAACAGACCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:6821723/136‑1 (MQ=255) taacaaaaaaGTCGACACAGTATCTAAAATTTGGGGTAAACAAACAACGAAAGCAGTTCAACGGCTTGCCAACGCAAACACAAAAAAAGACAGCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:267921/134‑1 (MQ=255) tAACATAAAAGTCTACAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:3439146/140‑1 (MQ=255) ataTAAAAGTCGATAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAATTGGTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:7475281/138‑1 (MQ=255) aGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:4702117/140‑1 (MQ=255) aGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGACATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:2771920/140‑1 (MQ=255) aGATAAAAGTCGAGAAAGAATCTAAAATTTTTGGCAAACAAACAACCAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:6250285/140‑1 (MQ=255) aGAAAACAGTCGAGAAAGTATCTAAAATTTTTGGCACACAAACAAAGAACGCCGTTCACCGGCTTGCCAACGGAAAGACAAAAAAAGAGATCCGGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:5455990/140‑1 (MQ=255) aTAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAACTGCTTGCCAACGGACAGACAAAAAAACAGATCCTGAAAACGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGt > 1:5714310/1‑140 (MQ=255) aTAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGt > 1:945787/1‑140 (MQ=255) aaaaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGtat > 2:6707950/1‑140 (MQ=255) agcccacaaaGTATCAAAATTTTTTGGAAAAAAAAAAAACAAAGCATTACAACTGCTTGCCACCGCAAACACAAAAAAAGACATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATatg < 1:2074513/133‑1 (MQ=255) aGTCGAGAAATTATAAAAACTTTTTGGCACACAAACAAAGAAACCAGTTCAAATGATTGCAAACGCAAACACAAAAAAAGCTAACCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATatg < 1:3489060/140‑1 (MQ=255) gataaaGTATCTAAATTTTGTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg < 2:2472770/137‑1 (MQ=255) agaAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTGGATGTATATGATGGt > 2:1891982/1‑140 (MQ=255) caaaGTATCTAAAATTTTGGGCAAACAAAAAAATAAAGCATTTAAAATGCTTGCCAACGTAAAGAAAAAAAAAGACATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTg < 1:5529921/139‑1 (MQ=255) aTCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGatat > 1:6354753/1‑140 (MQ=255) aTCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGatat > 1:1314794/1‑140 (MQ=255) aaaaTTTTGGGGAAAAAAACAAAGAAAGCCGTTCACTTGCTTGCCAACGGAAAGAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGt < 2:5754800/140‑1 (MQ=255) aaaaTTTTGGGCAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGt < 1:6600488/140‑1 (MQ=255) aaaTTTTTGGGAAACAACAAAATAAAGCTGTTCAAATGCTTCCAAACGGAAAGAAAAAAAAAGAGATCATGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtc < 1:4286832/140‑1 (MQ=255) tttttGGGAAACAAACAAAGAAAGCACTTCAAATGCTTCCCAACGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatc < 2:606425/140‑1 (MQ=255) tttttGGGAAAAAAAAAAACAAAGCCGTTCAAATGCTTGCCACCGGAAAGACAAAAAAAGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatc < 1:1386996/140‑1 (MQ=255) tttggccaaaaaaaaaaACAAACCAGTTCAAAGGCTTGCCAACGCAAACAAAAAAAAAGACATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatca < 1:5286999/133‑1 (MQ=255) tttgccaaacaaaaAAACAACCCAGTTCAAATGCTCGCCACCGCAACGACAAAAAAACAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:5915503/134‑1 (MQ=255) tttGGTAAAAAAACAAAGAAAGCTGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGCTCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:3570659/140‑1 (MQ=255) tttGGGAAACAAACAAAGAAAGCATTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGACCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:5138613/140‑1 (MQ=255) tttGGCAAACAAAAAAAGAAAGCAGTTCAAATGATTGCCAACTGAAAGACAAAAAAACAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:1796801/140‑1 (MQ=255) tttGGCAAAAAAACAAAGAAAGCTGTTAAACTGCTTGCCACCGCAACCAAAAAAAAAGAGATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:2472168/140‑1 (MQ=255) ttGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATg > 1:7130974/1‑140 (MQ=255) agaaagaaGTTAAAAGCCTTGCAAACTGAAATACAAAAAAAGAGATCGTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATAATGGGTCTATCAGGGAGc < 2:5367117/140‑1 (MQ=255) aagCAGGTCAAATGCTTGCAACCGGAAACACAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGt < 2:6979343/140‑1 (MQ=255) agCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGtc > 2:7587230/1‑139 (MQ=255) agCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTa > 2:5973577/1‑140 (MQ=255) aGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAAt < 2:366636/140‑1 (MQ=255) gTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 2:3861309/140‑1 (MQ=255) gTTAAAATGCTTGCCAACGGAAACACAAAAAAAGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 2:2285948/140‑1 (MQ=255) | GTGTGGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAC > NZ_CP034943/316123‑316401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |