| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 112,586 | G→T | 6.9% | intergenic (+264/‑40) | gltX → / → cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 112,586 | 0 | G | T | 6.9% | 1789.9 / 20.8 | 721 | intergenic (+264/‑40) | gltX/cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (246/395); new base T (73/6); total (319/402) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.64e-21 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 732 total aligned reads displayed.
TTCGAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACA > NZ_CP034943/112448‑112726 | ttCGAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTgg > 2:6353968/1‑140 (MQ=255) gAAATCAGTATTCATAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAAGAGATTGGAACCGCGCGGTTTAAGCGTATCTTTAATGTTTTAATTATTATTCGCTTTTTTTATTTGGTg < 2:2857034/140‑1 (MQ=255) aaTCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTTaa > 2:454751/1‑140 (MQ=255) aaGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCaaa < 1:4795690/140‑1 (MQ=255) ggcggaCGCCGCCGTTACAGTCTGAATTTGTGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGAGGTTTAAGCGTCTCTGTGATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTTAAGAGGAAATCAAAtt < 2:1792307/140‑2 (MQ=255) cggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGGGAAGAGGAAATCAAATaga > 2:5126891/1‑140 (MQ=255) cggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATaga > 2:5334972/1‑140 (MQ=255) cggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTAAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGAAGAGGAAATCAAATaga > 2:2674000/1‑140 (MQ=255) ggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATagag < 1:1132801/140‑1 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAgaga > 1:3519645/1‑140 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCGTTTTTTATTTGGTGTAGAGGAAATCAAATAgaga > 1:2566570/1‑140 (MQ=255) ccgccgccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGaa < 1:5320062/140‑1 (MQ=255) ccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTgggg < 2:7691444/140‑1 (MQ=255) ccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTgggg < 2:4975580/140‑1 (MQ=255) ccgTGACAGGCTGAAGTTGGGAGAGCATAAGTCTGCTTTTCAAACATAGTGGAACCGGGAGGGTTAAGCGTCTCTTTCATGTTTTGATGCAGAGGCGGTTTTTTTATTGGGTGAAGAGGAAATCATATAGAGAAGTgggg < 2:5942957/140‑1 (MQ=255) cgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGGGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTggggg < 2:4816710/140‑1 (MQ=255) cgTTACAGGCTGAAGTTGGGAGAGCAGAACTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTggggg < 2:4429762/140‑1 (MQ=255) ggCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATAAAATATATAAGTGGGGGGAAGCag > 1:4952505/1‑139 (MQ=255) tGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAATCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCAtgtg > 2:7173509/1‑140 (MQ=255) tGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGGGGGGGGAAGCAtgtg > 1:3457949/1‑140 (MQ=255) ggAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGTGGCGCTTTTTTTATTGGGTGTAGTGGAAATAAAAAAGATTAGTGGGGGGAAGCATGGGTTTTTTAg > 1:6497666/1‑140 (MQ=255) ggAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGATGAAAACAAATAGAGAAGTGGGGGGAAGCATGTTTTTTTTAg > 2:608821/1‑140 (MQ=255) ggAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAg > 2:6684550/1‑140 (MQ=255) gagcccAGACGTCTGCATTTCAACCAGAGTGGAACCGCGCGGTTTAAGCGTCTCGGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 2:6193708/135‑1 (MQ=255) gagaGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTACGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:2813789/140‑1 (MQ=255) agCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTTTTGGGTGAGGTGGGAATCAAATAGAGAATGGGGGGGCAGCAGGTGtgtttttatatg > 1:6420724/1‑134 (MQ=255) cAGAAGTCTGCTTTTCAAACCGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGCAGAGGAAATCAAAGAGAGCAGAGGGGGGAAGCAGGGGTTTTTTAGaagggt > 2:5817281/1‑136 (MQ=255) cAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCt > 2:5263325/1‑140 (MQ=255) cAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGGTAAGAGGAAAACAAATAGAGAACTGGGGGGAAGCATTTGTTTTTTAGAATTCt > 2:5442499/1‑140 (MQ=255) aaGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGGGTAGAGGAAATACAATAGAGAAGTGGGGGGGAGCAAGTGTTTTTTATAAATCTCaa > 1:1382113/1‑140 (MQ=255) gTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaag < 1:6299730/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAACTCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:7668687/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:1380962/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:7480931/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:1637390/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:5833797/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTCTTTATTGGGTGAAGAGGAAAACAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:6821680/140‑1 (MQ=255) tGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGAGTCTCTGTGATGTGTTCATGCAGAGGCGCTTTTTGTAATGGGGGTAGAGGAAATCGCATAGAGAAGTGGGGGGACGCATGTGTTTTTTCTGATGCTCAaagaag > 2:1193896/1‑140 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAATCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAACTAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:3935039/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCCTGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCCAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:2982863/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:4709533/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:2340582/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:4064234/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:2738659/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCGGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:420714/140‑1 (MQ=255) cTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATAAAATAGAGCACTGGGGGGGACCATGTGTTTTTTATAAAGCTCaaaaaaaaa > 1:5206163/1‑137 (MQ=255) ttttCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACa < 2:5558174/140‑1 (MQ=255) ttttCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACa < 2:3519645/140‑1 (MQ=255) ttttCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTCTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGCAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACa < 2:7306713/140‑1 (MQ=255) aaCAGAGGGGAACCGCGCGGTGAAAGCGTCTCTGTCATTTTTTCATGCAGTGGCTCTTTTTTTATTGGGTGAAGAGTAAATCAAATAGAGAACTGGGGTGAAGCTTGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:6711863/140‑1 (MQ=255) gagTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAAAAGAGAATTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAgt > 2:1920287/1‑140 (MQ=255) agTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGGGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAAAGCTCAAAGAATACATTtataaaatg > 2:2497983/1‑135 (MQ=255) aCCGCGCGGTTTAAGCGTCTCTTTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGCAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGGGTTCGAt < 1:4596829/140‑1 (MQ=255) ctcgaggTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTCTTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCa < 2:2242830/135‑1 (MQ=255) cgcgcgGTTTAAGCGTCTCTGTCCTGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCa < 1:3231233/140‑1 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCTCTTTTTTTATTGGGTGTATAGGAAAAAAAATAGTGAATAGGGGTGTAACATGTGTTTTTTAGAATGCTCAAATAAAAAATTGTTACAGTTTTCGATCaaa > 2:2102840/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTTTTGGGTGTATAGGAAATCAAATATAGTAGTGGGGGGGAGCATGTGTTTTTTAGAATTCTCAAAGAATACATTTTTAAAGTGTTCGATAAAg > 1:5363580/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTTTTGGGTGAAGAGGAAATAAAAAATAGTAGTGGGGGGGAGCCAGTGTTTTTTATAATTCTCAAAGAAGAAAAAGATTCAGTGTTCGATaaaa > 1:7256647/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGAATAGGAAAACAAATAGAGAACTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATAAAGTGTTCGATCaat > 2:7027052/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGAAGAGGTAATCAAATAGAGAAGTGGGGGGGAGCCAGTGTTTTTTTTTATGCTCAAAGTATAAATTGTAACAGTGTTCGATCAAg > 1:7090987/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGTGAAGAGGTAATAAAAAATATAATGGGGGGGACGAATGTTTTTTTTTTTATTGTGAATTATTACATTGATAAAGTGTTAGATGAAg > 1:3802163/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTTGGGGTACTTGTAATAAAAAAGAGAAGTGGGGGGTACCATGTGTTTTTTAGAATTCTAAAAAAAAAAAAATATAAAATGTTCGATCaaa > 1:1829695/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGTAGAGGAAATGAAATAGAGAAGGGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAATAAGACATTTATCCAGTGTTCGATCAAg > 2:6856469/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGCGGAAATCAAATAAATAAGGGGGGGGAAGCATGTGTTTTTTAGTATTCTAAAACAAGAAAATTATACAATGTTATATCaaa > 1:4446568/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGCAGCATGTGTTTTTTAGAATGCTCAAATAAGACATTTATACAGTGTTCGATAAAg > 2:1465720/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAg > 2:4299050/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGGGTAGAGGAAATCAAATAGAGCAGTGGGGGGAAGCCTGTGTTTTTTAGAAAGCGCAAAGAAGACATTGTTACAGTGTTAGATCAAg > 1:5665082/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCGTTTTTTTTTTGGGGGAGATGCAATCAAATAGAGAAGGGGGGGGGCGGCTGTGTTTGTTAGAATGCTGAAAGAATACAATGGAGCAGGGTTGGATGAAg > 1:5768877/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCGTTTTTTATTTGGGGGAGACGGAAACAAATACAGAAGGGGGGGGCACCAAGGGTTTTTTTTTATTCTCAAAGAAAAACATGTTAAAGTGTTAGATGAAg > 1:6906647/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTAATGCAGAGGCGCTTTTTTTATTGGGTGTAAATGGAATCAAATAGATTAGTGGGGGGAAGGATGTGTTTTTTTGAATTCTCAAAGAATAAATTTATAAATTGGTCGATaaaa > 1:3674201/1‑139 (MQ=255) cgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTTTTGGGTGTAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGAt > 2:1062127/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTTTTTGGTGTAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCAGGTGTTTTTTATAATGCTCAAATAAGAAATTGATACAGTGTTGGATCAAGATACAGCACCaaaaa > 1:5948039/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTTTTTGGTGAAGAGGAAATCAAATAGATAAGTGGGGGGAAGCAGGTGTTTTTTTTAATTCTCAAATAAGACATAGATAAAGTGTTGGATCAAGATCCAGCAGCaagaa > 1:2046336/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGGATATGTAATAAAAAAGAATAGTGGGGGGAAGGAAGTGTTTTTTTGGAATCTCAAAAAATACAATTATAAAATTTTGGATAAAGATACAGCATCaatta > 1:4266816/1‑137 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAATAGGAAATACAATAGAGAAGTGGGGGGCAGCATGTGTTTTTTACAATGCTCAAAGAATACATTGATACAGTTTTCGATCAAGATACAGCAGCaagaa > 2:6418796/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGCTGAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTAGATAAAGATACAGCCGCaagaa > 2:6534291/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAATCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCATCAGCaagaa > 2:7495237/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAATGCTCAAAGAAGACATTGATACAGTGTTCGATAAAGATCCAGCAGCaataa > 2:3716697/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:1024141/102‑1 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGAt < 1:6138200/121‑1 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAACCATGTGTTTTTTATAATTCTCAAAGAAGACATTGATAACGTGGTCGATCAATATCCAGCAGCaagaa > 2:5714012/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGACACGTGGGGGGAAGCCTGTGTTTTTTAGAATTCTCAAAGACGACAATGATAACGGGTTCGTTAAAGATCCAGCAGCaagta > 2:3269381/1‑138 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGCGTTTTTTATTTGGTGGAGTGGTAATCAAATAGTGAAATGGGGGGACTCATGTTTTTTTTAGAAATGTCAAATAATAAAATTATAAATTGTTGGATACATATACAGcaacaaaac > 1:7577528/1‑137 (MQ=255) ttttCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGCAATCAAATAGAGAAGTGGGGGGAAGGATGTGTTTTTTATAATGCTCAAAGAATACATTGATACAGTGTTCGATCAAGATACAGCAGCAAGAAGTTAttttt > 2:29410/1‑139 (MQ=255) ttCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 1:2317342/140‑1 (MQ=255) ttCATGCAGAGGCGCTTTTTTTATGGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 2:1265154/140‑1 (MQ=255) tCATGCCGAGGCGCGTTTTTTATTGGGTGGAGAGGAAATCAAATAGAGTAGTGGGGGGTAGCCTGTGTTTTTTAGAATGCTCAAAGAAGACAATGATACAGTGTTCGATAAAGATCCAGCAGCAAGAACTTATTTTGaat > 2:6959235/1‑139 (MQ=255) tCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATTCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAg < 2:1545010/140‑1 (MQ=255) aTGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAgcagca < 1:5488939/122‑1 (MQ=255) agGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTa < 1:1215235/140‑1 (MQ=255) ttttttATTGGGTGAAGAGGAAATCAAATAGAGACGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTAtt < 2:874227/140‑1 (MQ=255) ttttCTTGGCTGAAGAGGAAATCACCTAGAGAAGGCGGGCGCAGCATGTGTTTTAGAGCATGCTCAACGCAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTGTAACTTATTcc < 1:5564264/140‑1 (MQ=255) tttATTGGGTGAAGCTGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCg < 2:7585313/140‑1 (MQ=255) tATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGt < 2:3053543/140‑1 (MQ=255) tGGGTGAATAGGAAATCAAATAGACAAGTGGTGGGAATCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTTATTTTAACTTATTCCGGTTTa < 2:1997358/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 1:966254/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 1:6693365/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:3368267/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAAGAGAGCAGGGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 1:3925787/140‑1 (MQ=255) gggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTAc > 2:40718/1‑140 (MQ=255) | TTCGAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACA > NZ_CP034943/112448‑112726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |