| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,097,451 | C→A | 8.7% | P65Q (CCA→CAA) | EO946_RS05675 → | MarR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,097,451 | 0 | C | A | 8.7% | 725.6 / 13.5 | 290 | P65Q (CCA→CAA) | EO946_RS05675 | MarR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (154/100); new base A (2/34); total (156/134) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.79e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 321 total aligned reads displayed.
TCAGCAGGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTG > NZ_CP034943/1097314‑1097590 | cgcagGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACcaatc > 2:761207/2‑140 (MQ=255) agcagGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACACTGAACcaatc > 2:7154314/1‑140 (MQ=255) agcagGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACcaatc > 1:1163668/1‑140 (MQ=255) agcagGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACcaatc > 1:3697917/1‑140 (MQ=255) gcagGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACcaatca < 1:3188071/140‑1 (MQ=255) cagGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACcaatcaa > 2:2395450/1‑140 (MQ=255) agGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGCGCACGGGAGTAAATCTCAATTATCGATGACAGAAAATCATGTTCTTTCTGGTGTTGGGGACAATGAACcaatcact > 2:33250/1‑138 (MQ=255) agGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACcaatcaat > 2:7346057/1‑140 (MQ=255) agGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACcaatcaat > 1:4461439/1‑140 (MQ=255) agGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACcaatcaat > 1:7102363/1‑140 (MQ=255) gagaAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGt < 2:2086865/140‑1 (MQ=255) agaAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTc < 1:4542959/140‑1 (MQ=255) gggAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCACTCAATGTCACGTCt > 2:1737964/1‑140 (MQ=255) aGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTAtt > 1:65701/1‑140 (MQ=255) aGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTAtt > 2:7374642/1‑140 (MQ=255) aGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCGTGTGGTGGGGACAATGAACCAATCAATGTCACGTCTAtt > 1:42833/1‑140 (MQ=255) ggggCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATTAACCAATCAATGTCACGTCTATTg > 2:3232453/1‑140 (MQ=255) ggggCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTg > 2:1492992/1‑140 (MQ=255) ggCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCa > 2:5089915/1‑140 (MQ=255) cATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTg < 2:5956547/134‑1 (MQ=255) aGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGa > 1:905994/1‑140 (MQ=255) gCCTTTTTGGCTGACGAATTGAAGAAGCTCGGTGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGaa < 2:4662104/140‑1 (MQ=255) gCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCTATGTCACGTCTATTGCAGAAAAAATGaa < 1:7038032/140‑1 (MQ=255) gCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGaa > 2:7666177/1‑140 (MQ=255) gCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGaa < 1:6964877/140‑1 (MQ=255) cTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATa < 1:5125040/140‑1 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGaa > 1:7156269/1‑128 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATAct > 1:4085530/1‑139 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:5408769/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:4877515/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:4760829/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:6342851/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:2182076/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:4657899/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 2:6440450/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:3945845/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAAGACg > 1:6241834/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCGATTGCAGAAAAAATGAATACg > 2:5219359/1‑140 (MQ=255) ttttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTAATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACg > 1:1236553/1‑140 (MQ=255) tttggtGAGGAATTTAAGATGTTCTTTTTCGTGCAGGGGATTAAATCTCAATTATCTATGACATAATTTAATGTTCTTTCTTGTTTTGGGTACAATTAACCAATCAATTTAACGTCTATTGCAGAAAAAATGAATACGAc < 2:306651/135‑1 (MQ=255) ttGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGAc < 2:3448642/140‑1 (MQ=255) gCTGACTATTTCAAGACTCTCGTTGTCGACCACGGCATAAAACCGAAATTATCTTTCAAACAAATACATGTTCTTTGTTTTTTTGGGGACATTTAACAAATAATTGTAAGGTCTATTTCACAAAAAATGAATACGACaaa < 2:226637/140‑1 (MQ=255) tGACGAATTGATCAAGCTCTATGTCGAGCAGGGGATTAAATCTAAATTATCGATGACAGAAATTAATTTTCTTTCTTGTTTTGGGGAAAATCAACCAATCAATGTCACGTTTATTGCACAAAAAATTATTACGAAAAAAg < 2:3902738/140‑1 (MQ=255) aCGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCg > 1:2470339/1‑140 (MQ=255) aCGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCg > 1:1962064/1‑140 (MQ=255) gAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATTAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGAc > 2:5825627/1‑140 (MQ=255) gAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAATAATGAATACGACAAAAGCGAc > 2:1401954/1‑140 (MQ=255) acaagCTCGCTGTCGAGCAGGGGATTAAATCTCAATTATCGAGGACAGAAATTATTGTTCTTTCTGGTTTTGGGGAAAATTAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACCAAAAACGCGACTGTATcg < 2:2695878/138‑1 (MQ=255) agCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCgcgc > 1:2271558/1‑140 (MQ=255) cTCGTTGTCGAGCACGGCATTAAATCTAAATTATCGCTGACAGAAATTCATGTTGTTTGTTGTTTTGGGCACAATAAACAAAACATTGTAACTTCTATTGCAGAAAAAATTAAAACCACAAAAGCGACTGTATCGCGCAt < 2:4855732/140‑1 (MQ=255) cTCGATGTCGAGCACGGTTTTAAATAACAATTATCGATGACACAAATTCATGTTCTTTGTTTTTTTGGGGAAAATGAACCAATCATGTTCACGTCTTTTGCATAAAAAATGAATACCACAAAAGCGACTGTATCGCGCAt < 2:5260697/140‑1 (MQ=255) cTCGATGTCGAGCACGGGATTAAATCTAAATTATCGATCACACAAATTCTTGTTTTTTCTTGTGTTGGGGACAATGAACCATTAAATTTCACGTCTATTGCACAAAAAATCAATACGACAAAAGCGACTGTATCGCGCAt < 2:2546125/140‑1 (MQ=255) gttttCGAGCAGGGTATTAAATCTAATTTATCGATTACATAAATTAATTTTGTTTTTTTTGTTGGGGAAAATGAACAAATAATTGTCACTTATATTGAACAAAAAATCAAACCCACAAACGCGACTGTATCGCGCATCAg < 1:6440450/136‑1 (MQ=255) aTGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCGATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGc > 1:1406904/1‑140 (MQ=255) aTGTCGAGCACGGGAGTAAATCTCAATTAAAGATGACAGAAATGCATGTTCTTTCTGGTGTTGGGGACAATTAACAAATCAATGTCACCGCTATTGCAGAACAAATGAATCCGACAAAAGAGACTGTCTCGCGCCTCAGc > 1:5934946/1‑140 (MQ=255) tGTCGAGCACGGTAGTAAATCTAAATTATCGATGACAGAAATAAATTTTTTTTCTTGTTTTGGGCAAAATGAACCAATAATTGTCACGTATATTCCAGAAAAAATGAATACCACAAACGCGACTGTATCGCGCATCAGca < 2:5548868/140‑1 (MQ=255) aGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACaaaa > 1:5957766/1‑140 (MQ=255) aGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAAAACGACAAAAGCGACTGTATCGCGCATCAGCACaaaa > 2:5668895/1‑140 (MQ=255) aaaTCAAAATTAGCGATGAAATAAATACATGTTCTTTGTTGTGTTGGGCAAAATCAACCAAGAATTGCAACGTATATGCCACAAAAAATCAACCCCCCAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGgcgc < 1:2812890/140‑1 (MQ=255) aaaTATAAATTATCTATCACACAAATTCATTTTCTTTTTTGTGTTGGGCAAAATTAACAAAACAATTTAACTTATATTGCACAAAAAATTAATCCGAAAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGgcgc < 1:7384628/140‑1 (MQ=255) aaTCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGcgcg > 2:3692995/1‑140 (MQ=255) aTCTCATTTATGGATGACATAAATTCATGTTCTTTCTTGTGTTGGGCACAATCAACAAATCATTGTAACGTATTTTGAACAAAAAATTAAAACCCCAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCgg < 1:7666177/140‑1 (MQ=255) ctcAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGt > 1:5749018/1‑140 (MQ=255) ctcAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGt > 2:2140156/1‑140 (MQ=255) ctcAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGt > 1:1898375/1‑140 (MQ=255) atcAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTGGGGCACAATCAACCAATCAATGTCACGTCTATTGAATAAAAAATCAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGt < 2:4589412/139‑1 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGttt > 2:4020103/1‑140 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGttt > 1:1083916/1‑140 (MQ=255) cAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGttt > 2:6488340/1‑140 (MQ=255) aaTTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTc < 2:3948162/140‑1 (MQ=255) ttATCTATTACACAATTTCTTTTTTTTTGTTGTGTTGGGCAAAATCAACAAATCAATTTCACGTTTTTTGAATAAAATTTGATTACCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGAGCGTGTTTCCt < 2:1236553/140‑1 (MQ=255) ttATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCATTGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCt < 2:6181187/140‑1 (MQ=255) tgtctGACTGAATTTCATGTTCTTTGTGGTGTTGGGCAAAATTAACAAATAAATTTAAGGTCTATTGCAGAAAAAATGATTACGACAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 2:6794863/136‑1 (MQ=255) tctaTGACAGAAATTCAGGTTGTTTCTTTTTTTGGGCACAATGACCAAATAAATGTCCCGTCTATGGCACAAAAAATGAATACCACAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:2841718/137‑1 (MQ=255) tctaTGAAAGAAATTAATGTTCTTTTTTGTGTTGGGGAAATTTAACAAATAATTGTCAGGTCTATGGCAGAAAAAATGAAAACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:1646579/137‑1 (MQ=255) tcgttcaCATAAATTATTTTTTTTTGTTGTGTTGGGGAAAATGAACCAATCATTGTCACGTCTATTGCAGAAAAATTGAATACGACAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:7479676/134‑1 (MQ=255) tatttGACATAAATTCTTGTTCTTTCTTGTGTTGGGGAAAATGAACCAATAATTGTCACGTATTTTGCAAAAAAAATGAATCCGCAAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 1:262475/136‑1 (MQ=255) tCGATGACATATATTCATTTTCTTTCTTGTGTTGGGGACATTGAAACAATCTTTGTCACGTATTTTTCATAAAAATTGAATACGAAAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 2:6915513/140‑1 (MQ=255) tCGATGACATAAATTCTTGTTCTTTGTTGTGTTGGGCACAATGAACAAATCAATGTCACTTATATTGCAGAAAAAATTAATACGAAAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 2:65701/140‑1 (MQ=255) tCGATGACATAAATTCTTGTTCTTTCTTGTGTTGGGGAAAATTAACAAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTca < 2:3789168/140‑1 (MQ=255) cGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTcac > 2:2855463/1‑140 (MQ=255) cGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTcac > 2:4759087/1‑140 (MQ=255) gttGACATAAATGCATGTTCGTCCTTGTGTTGGTCACAATGACCCAATCAATGTCAGTTATATTGCTGAAAAATTGATTACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTcact < 2:4522212/138‑2 (MQ=255) gATGACATAAATTCATTTTCTTTCTTGTTTTGGGGACAATGAACAAATCATTGTCACGTCTATTCCACAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTcaca < 2:7102363/140‑1 (MQ=255) gATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTcaca > 2:839228/1‑140 (MQ=255) aaaTTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCCCAAAATTGCGCGGCGCGGGTTTCCTTCACAGAACACAg > 1:3778981/1‑140 (MQ=255) aaaTTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAg > 1:3541222/1‑140 (MQ=255) gTTCTTTGTTGTGTGGGGCACAATCAACAAAGCAATGTCACTTATTTTCAAGAAAAAATCAATACCCCAACAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGa < 2:6331340/140‑1 (MQ=255) ttttGGGTACAATCAACCAATCAATGTCACTTATATTGCAGAAAAAATTAATACGAAAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAagg < 2:2191978/138‑1 (MQ=255) ttttGGGCAAAATGAACCAATCACTGTCACGTCTTTTGAATAAAAAATTAATAGGACAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAagg < 2:557403/138‑1 (MQ=255) tgtTGGGGAAAATTAACAAATAATTGTCACGTATATTGCATAAAAAATGAATACCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAagg < 1:297786/140‑1 (MQ=255) gggACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACCACAAACGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTc < 1:7374642/140‑1 (MQ=255) ggcaaaaTCAACAAATCAATTTCCCGTCTATGGCAAAAAAAATCAATACCACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTc < 1:6858755/135‑1 (MQ=255) gACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTa > 2:5037681/1‑140 (MQ=255) gACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTa > 2:4227750/1‑140 (MQ=255) gACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTa > 1:6095638/1‑140 (MQ=255) aaTGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACtt > 1:5048547/1‑140 (MQ=255) tGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACCAAAAGGAGGTCTACTTcc > 2:1583455/1‑140 (MQ=255) tGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGAGAACAAAAAGGAGGTCTACTTcg > 1:5843000/1‑139 (MQ=255) aCCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGAt > 2:3669531/1‑140 (MQ=255) | TCAGCAGGAGAAATGGGAGGGGCTCATTAAAGCCTTTTTGGCTGACGAATTGAAGAAGCTCGATGTCGAGCACGGGAGTAAATCTCAATTATCGATGACAGAAATTCATGTTCTTTCTTGTGTTGGGGACAATGAACCAATCAATGTCACGTCTATTGCAGAAAAAATGAATACGACAAAAGCGACTGTATCGCGCATCAGCACAAAATTGCTCGGCGCGGGTTTCCTTCACAGAACACAGCTCAGCGATAACAAAAAGGAGGTCTACTTCCGATTG > NZ_CP034943/1097314‑1097590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |