| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,669,737 | C→T | 100% | Q88* (CAG→TAG) | fliM → | flagellar motor switch protein FliM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,669,737 | 0 | C | T | 98.9% | 1260.8 / ‑0.2 | 348 | Q88* (CAG→TAG) | fliM | flagellar motor switch protein FliM |
| Reads supporting (aligned to +/- strand): ref base C (3/1); new base T (196/147); total (200/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 348 total aligned reads displayed.
TCAAACGTGCGCTGCGGTTTTCCAAGGATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACCAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACGATGATGGATCGGGTAAT > NZ_CP034943/1669600‑1669873 | tCAAACGTGCGCTGCGGTTTTCCAAGGATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAg < 2:7120020/140‑1 (MQ=255) cAAACGTGCGCTGCGGTTTTCCAAGGATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAgg > 2:4177552/1‑140 (MQ=255) cgcTGCGGTTTTCCAAGGATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTccc > 2:1693399/1‑136 (MQ=255) cgcTGCGGTTTTCCAAGGATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTAt > 2:4800048/1‑140 (MQ=255) ggTTTTCCAAGGATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGaa < 1:6392582/140‑1 (MQ=255) gTTTTCCAAGGATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAAt < 2:475336/140‑1 (MQ=255) aGGATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGa > 1:5214333/1‑140 (MQ=255) ggATCAGATCCTCAGTCTAACGATAATTCATGACAATTTTGCAAGACTTCTTAATACTCACTTTTCTGCTCATCTCAGGACCTTTTTTCACATTTCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGat < 2:5700624/140‑1 (MQ=255) ggATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGat < 2:585619/140‑1 (MQ=255) ggATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGat < 2:5214333/140‑1 (MQ=255) aTCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGatcc > 2:5654489/1‑140 (MQ=255) aTCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGatcc > 2:375362/1‑140 (MQ=255) cAGTCTAACGAGAATTCATGACAATTTTGCAAGTCTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACa > 1:1533176/1‑140 (MQ=255) cAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACa > 1:744568/1‑140 (MQ=255) cAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACa > 2:4056201/1‑140 (MQ=255) cAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACa > 1:5886296/1‑140 (MQ=255) cAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTGATGAGGAATTTATCAGATCCATCCCGAACa > 1:3660117/1‑140 (MQ=255) tCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACCAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGa < 2:6904800/140‑1 (MQ=255) aCGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCGTATGAGGAATTTATCAGATCCATCCCGAACATGACGAt > 1:4740275/1‑140 (MQ=255) aCGAGAATTCATGACAATGGTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGAt > 1:6219880/1‑140 (MQ=255) aTTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGaa > 1:3541736/1‑140 (MQ=255) aTTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGaa > 1:698045/1‑140 (MQ=255) aTTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGaa > 2:7370644/1‑140 (MQ=255) aTTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATACCGAACATGACGATTTTGaa > 2:6420529/1‑140 (MQ=255) aTTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCACTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGaa > 2:3018156/1‑140 (MQ=255) ttCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAAt < 1:893394/140‑1 (MQ=255) ttGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTc < 2:1803796/140‑1 (MQ=255) cAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCAt > 2:7347155/1‑140 (MQ=255) aaGACTTCTTACTACTCACTTTTCTGCTCATCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGACGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATc < 1:6143873/140‑1 (MQ=255) aaGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATc < 2:2130848/140‑1 (MQ=255) aaGACTTCTTACTACTCACTTGTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATc < 2:2655530/140‑1 (MQ=255) aaGACTTCTTACTACGCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATc < 2:4537707/140‑1 (MQ=255) ccttcttACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGa < 2:3299534/139‑1 (MQ=255) ttcttACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATg < 1:4158336/140‑1 (MQ=255) ttcttACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATg < 2:7006341/140‑1 (MQ=255) ttcttACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATg < 1:1638210/140‑1 (MQ=255) ttcttACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATg < 2:247482/140‑1 (MQ=255) ttcttACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCGTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATg < 2:4740275/140‑1 (MQ=255) cttACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTCTCAGCTCTGTTGACTAGGTCCCTTATGAGGAAGTTATCAGATCCATCGCGAACATGACGATGTTGAAGAGGGTTGAGGTGCATCAGATCGa > 2:5940263/1‑140 (MQ=255) actcctGACTTTTCGGCTCAGCTCAGGACCTATATTCACATTTCTGTCAGCTCTGTTGACTAGGTCCCTTCTGAGGAATTTATCAGATCCATCCCGAACATGTCGCATTTGAATCTGTTTGACGTCCATCCGATGGaatg < 1:5670537/140‑3 (MQ=255) actactCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAgg < 1:2894824/140‑1 (MQ=255) actactCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAgg < 2:3792688/140‑1 (MQ=255) ctactCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTATGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGACTCTGTTTGACGTCCATCCGATGGAAGGt < 1:5419914/140‑1 (MQ=255) ctactCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGt < 1:318742/140‑1 (MQ=255) ctCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTTAATCTGTTTGACGTCCATCCGATGGAAGGTAgg > 1:6716883/1‑140 (MQ=255) ctCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGt < 1:4683620/137‑1 (MQ=255) ctCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAgg > 2:5032469/1‑140 (MQ=255) aCTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATg > 1:2570561/1‑128 (MQ=255) aCTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATg < 2:2570561/128‑1 (MQ=255) tGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGAc < 1:6507047/90‑1 (MQ=255) agctcagGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGtt < 2:6589716/140‑1 (MQ=255) agctcagGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGtt < 2:6200317/140‑1 (MQ=255) agctcagGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGtt < 2:3330841/140‑1 (MQ=255) agctcagGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGtt > 1:5953498/1‑140 (MQ=255) agGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTCTGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCTTCCGATGGAGGGTCGGATTAGGATGGCGGTTAAccc > 2:3912495/1‑140 (MQ=255) agGACCTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAAccc > 2:5974080/1‑140 (MQ=255) cTATATTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACaa < 1:4402618/140‑1 (MQ=255) tataTTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAt < 2:1533176/140‑1 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGACGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 1:5516726/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTCGGATTATGATGGAGGTTATCCCGACAAtt > 1:5739936/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 2:959372/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 2:872628/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 1:2223602/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 2:1160763/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 1:243180/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 1:736119/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 2:7669565/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 2:294152/1‑140 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTAGGATGGAGGTTAACCCGACAAtg > 2:6543816/1‑139 (MQ=255) atatTCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATAAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAAtt > 2:2864355/1‑140 (MQ=255) atatTCACATATCTGGCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGAGTATGATGGAGGTTAACCCGACAAtt > 2:1483469/1‑140 (MQ=255) ttCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCa < 2:5458742/140‑1 (MQ=255) ttCACATATCTGTCAGCTCTGGTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCa < 2:1624354/140‑1 (MQ=255) tCACATATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCat < 1:7285673/140‑1 (MQ=255) cacaTATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCata < 1:6940401/140‑1 (MQ=255) caTATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCAtata < 1:6369530/140‑1 (MQ=255) caTATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCAtata < 1:4898752/140‑1 (MQ=255) caTATCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCAtata < 1:7669565/140‑1 (MQ=255) aatatCTGTCAGCTCTGTTGACTAGGTCCGTTATGAGGAATTTATCAGATCAATACCGAACATGACGATTTTGAATCTGTTTGAAGTCCATCCGATGGAAGGTAGGATTATTATGTAGGTTAACCCGACAATTGCAtata < 1:7187005/139‑1 (MQ=255) atatCTGTCAGCTCTGTTGACTAGGTCCCTTATGTGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGGTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATAc > 2:4477136/1‑140 (MQ=255) atatCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACa < 2:2491719/129‑1 (MQ=255) atatCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACACGACAATTGCATATAc > 2:2032729/1‑140 (MQ=255) atatCTGTCAGCTCTGATGACTAGGTCCCTTATGAGGAATTTATCAGATCAATCCCCAACATGAAGATTTTGAATCTGTTTGACGTCCATCCTATGTAAGGTAGGATTATGATGGAGGTTAACAAGACAATTTCATATAc > 2:6816625/1‑140 (MQ=255) tCTGTCAGTTCTGTTGATCAGGTTCCGTATGAGGAATTTATCAGATCGATTCCAAACATGACGATTCTGAATCTATTTGATGTTCATCCGATGGAAGGAAGAATTATGATGGAGGTCAACCCCACGATAGCTTATAAgat > 2:423799/1‑140 (MQ=255) tCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACgat > 1:2964182/1‑140 (MQ=255) tCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACgat > 2:3532427/1‑140 (MQ=255) tCTGTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACgat > 2:3123098/1‑140 (MQ=255) gTCAGCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACgatgat > 2:5414973/1‑140 (MQ=255) gCTCTGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACGATGATGGAt < 1:1251886/140‑1 (MQ=255) ctctGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACGATGATGGATc < 2:2223602/140‑1 (MQ=255) ctGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACGATGATGGATCgg < 1:3995522/140‑1 (MQ=255) tGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAgg > 2:1400196/1‑87 (MQ=255) tGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAgg < 1:1400196/87‑1 (MQ=255) tGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGAt > 1:7577446/1‑93 (MQ=255) tGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGAt < 2:7577446/93‑1 (MQ=255) tGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGAt > 1:2058864/1‑93 (MQ=255) tGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACGATGATGGATCggg > 1:6065715/1‑140 (MQ=255) tGTTGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACGATGATGGATCggg > 2:3647891/1‑140 (MQ=255) ttGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAgg < 1:4489355/85‑1 (MQ=255) ttGACTAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACGATGATGGATCGGGTa > 2:5891167/1‑140 (MQ=255) | TCAAACGTGCGCTGCGGTTTTCCAAGGATCAGATCCGCAGTCTAACGAGAATTCATGACAATTTTGCAAGACTTCTTACTACTCACTTTTCTGCTCAGCTCAGGACCTATATTCACATATCTGTCAGCTCTGTTGACCAGGTCCCTTATGAGGAATTTATCAGATCCATCCCGAACATGACGATTTTGAATCTGTTTGACGTCCATCCGATGGAAGGTAGGATTATGATGGAGGTTAACCCGACAATTGCATATACGATGATGGATCGGGTAAT > NZ_CP034943/1669600‑1669873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |