| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,193,442 | T→G | 6.6% | E61D (GAA→GAC) | htrB ← | serine protease Do‑like protein HtrB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,193,442 | 0 | T | G | 6.6% | 1066.9 / 12.2 | 406 | E61D (GAA→GAC) | htrB | serine protease Do‑like protein HtrB |
| Reads supporting (aligned to +/- strand): ref base T (142/220); new base G (42/2); total (184/222) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.45e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 435 total aligned reads displayed.
AGAAACGGCCTCGGTCGCCTGATTTTGGTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATGTTCTGTATGTGAAGATT > NZ_CP034943/3193304‑3193581 | aGAAACGGCCTCGGTCGCCTGATTTTGGTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGttt < 1:6984434/140‑1 (MQ=255) gAAACGGCCTCGGTCGCCTGATTTTGGTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTc > 2:7097159/1‑140 (MQ=255) cGGTCGCCTGATTTTGGTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTcc < 1:5211713/140‑1 (MQ=255) cGGTCGCCTGATTTTGGTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTcc < 2:3388567/140‑1 (MQ=255) cTGATTTTGGTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGACTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTa < 1:6760581/140‑1 (MQ=255) gTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTGCATTTGTAAATCGGAAg > 1:6660790/1‑140 (MQ=255) gTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAg < 1:3780596/140‑1 (MQ=255) gTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTGTCTGTCGGTTCCATTTATAAAGCAGAAg > 1:638054/1‑140 (MQ=255) aTGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTATAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTTAAGCAGAAGCCGtt < 2:6543662/140‑1 (MQ=255) aTGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTGGGTCTTTTGCAATTCTAAAACATAAGCCggt > 1:2084202/1‑138 (MQ=255) aTGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATGTCTAAAGCAGAAGCCGtt < 2:2116872/140‑1 (MQ=255) gCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCa < 1:2601723/140‑1 (MQ=255) aTAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGtt > 2:7578373/1‑140 (MQ=255) ggCGCGCTCCCTCGCAACAGACCCCCGCCGATAATCCCGCCGAAAATCGGGCTCAGCCAGGCGGCTCTCCGTTTCTTTTCTTTGTTCACAGCCGTTTCTGTCTTTTCCATGTCTAAAGCAGAAGCCGTTTCATGTTTTcc < 2:6423857/140‑1 (MQ=255) ggCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTcc < 1:7578373/140‑1 (MQ=255) ggCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTcc < 2:1311138/140‑1 (MQ=255) ggCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTAGTGTTTTcc > 2:5352633/1‑140 (MQ=255) cgcgATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCg < 1:2944917/140‑1 (MQ=255) cgcgATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCGGTCTTTTCCATTTCTAAAGCAGAAGGCGTGTGATGTTTTCCCg > 2:5006834/1‑140 (MQ=255) cgcgATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCAATGCGGCTCTCCGTGTCTTTTCTTTTTACACAGCCGTTTGTGTCTTTTCCATTTGTAAAACAGAAGCGGTTTCATGTTTTCCCg > 2:7228646/1‑140 (MQ=255) cgATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTGTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTGTCAGGTTTTCCCGCt > 2:4913775/1‑140 (MQ=255) tGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAACTCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCa < 1:4649469/140‑1 (MQ=255) tGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCa < 2:2007048/140‑1 (MQ=255) tGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCa < 2:6881158/140‑1 (MQ=255) ccGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATa < 2:3346281/140‑1 (MQ=255) ccGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATa < 2:7643053/140‑1 (MQ=255) ccGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATa < 1:6533746/140‑1 (MQ=255) gAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCAGGCGGCTCTCCGTTTCTTTTCTTTTTTCACGGCCGTGTCTGTCTGTTCCATTTCTAAAGCAGAAGCCGTGTCATGTGTTCCCGCGTCagagg > 2:7416326/1‑136 (MQ=255) aGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATAAGa > 2:3056793/1‑140 (MQ=255) aGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTGTCTGTCGTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCGTCATACGa > 1:3852537/1‑140 (MQ=255) aTCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTACATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAAc > 2:4616266/1‑140 (MQ=255) gACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGttt < 2:5468729/78‑1 (MQ=255) gACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGttt > 1:5468729/1‑78 (MQ=255) cccGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGt < 1:265762/140‑1 (MQ=255) ccgccgATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCTTTTCTTTTCTTTTTTCACAGCCGTGTCTGTGTTTTGCATTTCTAAAGGAGAAGCCGTTTGATGTTTTCCCGCTTCATAAGAAACAGGcgcggc > 1:2203242/1‑138 (MQ=255) ccgccgATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTGTGTCTTTTCCATTTCTAAAGCAGAAACCGTTTCTTGTTTTGCCGCTTCATACGAAACAGGGGCGtg > 1:7056210/1‑139 (MQ=255) cgccgATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCGTTTCCCTTTCTAAAGCAGAAGCCGTGTCATGTTTTCCGCGGTCCTACGAAACACGCGCGTcg > 2:5895844/1‑139 (MQ=255) cgccgATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTGTGTGTGGTTTCCATTTCTAAAGCACAAGCCGGTTCATGTTTTACCGCGTCATACCCAACAGGcgcggcc > 1:2377458/1‑137 (MQ=255) cgccgATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTGTGTGTCTTTTGCATTTCTAAAGCAGAAGCCGTTTCATGTTTTGCCGCTTCATAAGAAACAGGCGCGTCa > 1:5765048/1‑140 (MQ=255) cgATAATCCCGCCTAAACTCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGc < 1:977604/140‑1 (MQ=255) cgATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGc < 1:1369716/140‑1 (MQ=255) aTAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTGATGTTTTCCCGCTTCATa > 2:6041344/1‑119 (MQ=255) aTAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATa < 1:6041344/119‑1 (MQ=255) aTAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCaa > 2:2914195/1‑140 (MQ=255) aTCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAAttt < 1:438451/140‑1 (MQ=255) aTCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAAttt < 1:5288626/140‑1 (MQ=255) aTCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAAttt < 1:7170933/140‑1 (MQ=255) gCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTGTGTGTTTTGCATTTGTAAAGCAGAAGCCGTTTCATGTTTTGCCGCTTCATAAGAAACAGGCGCGTCCAGCAATTTGTGtt > 1:3542638/1‑140 (MQ=255) gCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTGTGTGTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTACCGCGTCAAACGAAACAGGCGCGTCAAGCAAATTGTGtt > 1:1731858/1‑140 (MQ=255) gCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTGTGTGGGTTTTACAATTCTAAAGCCGAACCCGGTTCATGTTTTAGCGCGTCATACGAAACCGGCGCGTCACGCACTGTGTGtt > 1:7659668/1‑140 (MQ=255) ccTAACCTCGGGCTCAGCCATGCCGCCCTCCGTTGCATTTCTTTTTTCCCAGCCGTGTCTGTCTTGTCCATTTCGACAGCCCAAGCCGGTTCATGTTTTCCCGCGTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTc < 2:5275638/140‑1 (MQ=255) ccTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTc > 2:2676724/1‑140 (MQ=255) cTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCa < 1:3459035/140‑1 (MQ=255) cTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCa < 1:509638/140‑1 (MQ=255) aaaaTCGGGCTCAGGCATGCGGCGCTCCGGTCATTTTCATATTTCCCAGCCGTTTCTGTCTTTTCCACTTCTAACGCAGAAGCCGTTTCATGTTTTCCCGCGTCATTCGAAACAGGCGCGTCAAGCAATTTCTGTTCAGt < 1:3194795/140‑1 (MQ=255) aaaaTCGGGCTCAGCCATGCGGCTTTCCTTTTCTTTTCTTTTTTCACAGCAGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGt < 2:1182158/140‑1 (MQ=255) aaaaTCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGt < 2:4342717/140‑1 (MQ=255) gggCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTc < 1:7327745/140‑1 (MQ=255) aGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCgg < 1:4771967/140‑1 (MQ=255) gCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGc < 2:5421331/140‑1 (MQ=255) cATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTg < 1:1206360/140‑1 (MQ=255) aTGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTAAGTATGTTCAATCGGCTGc < 2:6769297/140‑1 (MQ=255) tGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTGTCTGTCGTTTCCCTTTCTAAAGCAGAAGCCGTTTCATGTTTTGCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGcc > 1:5583920/1‑140 (MQ=255) cGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTGTTGGGTTTGCATTTCTAAATCAGAAGGCGTTTGCTGGTTTGCCGCTTCCTAAGAAACAGGGGGGTCCAGCAAGTTTGGTTGAGGTTGTTCAATAGGGTGGCgg > 1:1065683/1‑140 (MQ=255) cGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAACCCGGTTCATGTTTTGCCCCGTCATACGAAAAAGGCGCCTCAAGCAAATTGTGTTGAGTATGTTAAAAAGGCTGGCgg > 1:1906827/1‑140 (MQ=255) cGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTGTCGGTCAGTTACATTTGTAAAGCAGAAGCCGGTTCATGTTTTCCCCCGTCATAAGAAAGACGCGCGTCAAGGAAATTCTGGTGAGTATGGTTAATCGGCTGGCgg > 1:3287282/1‑140 (MQ=255) ggCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGt < 1:4573063/140‑1 (MQ=255) ggCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGt < 2:2853009/140‑1 (MQ=255) ggCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGt < 2:6617917/140‑1 (MQ=255) ggCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGt < 1:393695/140‑1 (MQ=255) ggCTCTCCGTTTCTTTTCTGTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAACGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGt < 1:5668559/140‑1 (MQ=255) ggCTCTCCGTTTCTTTTCTATTTTCACAGCCGATGCTGTCTTTTCCATTTCGAAAGCAGAAGCCGTTTCATGTTTTCCCCCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGt < 2:2469903/140‑1 (MQ=255) ggCTCTCAGGTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGt < 2:3873361/140‑1 (MQ=255) tctcCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTAt < 2:4724250/140‑1 (MQ=255) tctcCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCATTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTAt < 1:2700602/140‑1 (MQ=255) ctcCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGt < 1:5922393/97‑1 (MQ=255) ctcCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTATAAAGCAGAGGCCGGTTCATGTTTTCCCTCTTCATACGAAAAAAGCGCGTCAAGCAATTTCAGTTCAGTATGTTCAATCGGCTGCCGGTTAtt > 2:1599221/1‑140 (MQ=255) ctcCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTATAAAGCAGAAGCCGTTTCATGTTTTCCCCCTTCATACGAAACACGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAAACGGCAGCCGGTGAtt > 1:6922846/1‑140 (MQ=255) ctcCGTTTCTTTTCTTTTTTCACAGCCGTTTCGGTGTTTTCCAATTCTAAATCAGAACCCGTTTCATGTTTTCCCGCTTCATACGAAAAAGGCCCGTCAAGCAATTTCTTGTGAGTATGTTAAATCGGCTGCCgggtctt > 1:402900/1‑135 (MQ=255) tcCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTAttt < 2:5833533/140‑1 (MQ=255) tcCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTAttt < 2:563281/140‑1 (MQ=255) gTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTa < 1:2543821/140‑1 (MQ=255) gTTTCTTTTCGATTTTCACAGCCGTTTCTGTCTTTTCCATTTCGAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTa < 2:4409498/140‑1 (MQ=255) ttcttttcttTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTAtt < 1:3046955/140‑1 (MQ=255) cttttcttttTTCACAGCCGTTTGTGTCTTTTGCATTTATAAAACAGAAACCGGTTAATTTTTTTCCGCGTAAAAAGAAAAAAGCGCGTCAAGCAAATTGTGTTGAGTATGTTAAAAAGGCTGGCGGGTAATTTTATTCt > 1:7123862/1‑140 (MQ=255) cttttcttttTTCACAGCCGTTTCTGTGTTTTCCAATTATAAACCAGAAGCCCGTTAATTTTTTACCCCATCATAACAAAACCGCGCGTCAACCCAATTATTTTAAGTATTTTCAAACGGCTGCCGGGTATTTGTATTCt > 1:1650315/1‑140 (MQ=255) cttttcttttTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAATCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCt > 2:4135551/1‑140 (MQ=255) cttttcttttTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCACTTTCTGTTCAGTATGTTCAATCGGCTGCCGGGTATTTGTAttat > 2:3777131/1‑138 (MQ=255) ttttcttttTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTg < 2:6697574/140‑1 (MQ=255) ttttcttttTTCACAGCCGTTTATGTATTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTg < 2:1869681/140‑1 (MQ=255) tcttttTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATg < 2:3223618/140‑1 (MQ=255) tcttttTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATg < 2:3491522/140‑1 (MQ=255) ttttttCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATGtt < 2:6273145/140‑1 (MQ=255) tttttCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATGTTc < 1:7369431/140‑1 (MQ=255) tttttCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATGTTc < 2:4875522/140‑1 (MQ=255) ttttCACAGCCGTTTCTGTCTTTTGCAATTCTAAATCAGAATCCGGTTAATGTTTTACCGCTTCATAACAAACACGCGCGTGAAGCAAATTCTTTTCAGGATGTTAAATAGGGTGGCGGTTATTTGTATTATTATGttat > 1:4822162/1‑138 (MQ=255) ttttCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTACCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGGGGCCGGTTATTTGTATTCTGATGTTCt > 2:5212394/1‑140 (MQ=255) tttCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATGTTCTGTATGTGAAGAt < 2:5948866/140‑1 (MQ=255) ttCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATGTTCTGTATGTGAAGAtt < 1:4217353/140‑1 (MQ=255) ttCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTGTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATGTTCTGTATGTGAAGAtt < 1:6278624/140‑1 (MQ=255) | AGAAACGGCCTCGGTCGCCTGATTTTGGTCTGATGGCAGATAAGGCGCGATGCCGAGCATCAGACCCCCGCCGATAATCCCGCCTAAAATCGGGCTCAGCCATGCGGCTCTCCGTTTCTTTTCTTTTTTCACAGCCGTTTCTGTCTTTTCCATTTCTAAAGCAGAAGCCGTTTCATGTTTTCCCGCTTCATACGAAACAGGCGCGTCAAGCAATTTCTGTTCAGTATGTTCAATCGGCTGCCGGTTATTTGTATTCTGATGTTCTGTATGTGAAGATT > NZ_CP034943/3193304‑3193581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |