| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 2936101 | 219 (0.700) | 8 (0.030) | 4/246 | NT | 3.3% | coding (312/783 nt) | EO946_RS15115 | ABC transporter ATP‑binding protein |
| ? | NZ_CP034943 | 2936272 = | 253 (0.820) | coding (483/783 nt) | EO946_RS15115 | ABC transporter ATP‑binding protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCCTTCGGAAGGCAGAGTTCTGATTGAAGGCCGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/2935962‑2936101‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCACTGGAAAACCTGGTATTCCGCACATTAAAGGAGTATCAAAAAACTGCAGTGCTTGTCACACATGATATTGGGGAAGCGATAGCGATGAGCGATACGATCTTTTT > NZ_CP034943/2936272‑2936409 AGCCTTCGGAAGGCAGAGTTCTGATTGAAGGCCGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCC < 2:1275210/140‑1AGCCTTCGGAAGGCAGAGTTCTGATTGAAGGCCGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCC < 2:2816724/140‑1AGCCTTCGGAAGGCAGAGTTCTGATTGAAGGCCGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCC < 2:3026465/140‑1AGCCTTCGGAAGGCAGAGTTCTGATTGAAGGCCGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCC < 2:4030948/140‑1 GTTCTGATTGAAGGCCGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCTCCATTTTCCGCGCTTGATT > 2:5099329/1‑140 GTTCTGATTGAAGGCCGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCCATTTTCCGCGCTTGATT > 2:906069/1‑140 CGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCCATTTTCCGCGCTTGATTTTCAGACAAAGCTGT < 1:1161565/140‑1 CGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCCATTTTCCGCGCTTGATTTTCAGACAAACCTGT < 1:3407389/140‑1 TGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCCATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCA > 1:1694385/1‑140 TGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCCATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCA > 1:1694592/1‑140 AGGAAAATGTGCTTCTCGGTTTAAAAATCGCCATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCACTGGAAAACCTGGTATTCCGCACATTAAAGGAGTATCAAAAAACTGCAGTGCTTGTCACACATGATATTGGGGA < 2:1694385/140‑1 AGGAAAATGTGCTTCTCGGTTTAAAAATCGCCATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCAATGGAAAACCTGGTATTCCGCACATTAAAGGAGTATCAAAAAACTGCAGTGCTTGTCACACTTGATATTGGGGA < 2:1694592/140‑1 CCATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCACTGGAAAACCTGGTATTCCGCACATTAAAGGGGTATCAAAAAACTGCAGTGCTTGTCACACATGATATTGGGGAAGCGATAGCGATGAGCGATACGATCTTTTT < 2:3189762/140‑1 CCATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCACTGGAAAACCTGGTATTCCGCACATTAAAGGAGTATCAAAAAACTGCAGTGCTTGTCACACATGATATTGGGGAAGCGATAGCGATGAGCGATACGATCTTTTT < 1:1515448/140‑1 CCATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCACTGGAAAACCTGGTATTCCGCACATTAAAGGAGTATCAAAAAACTGCAGTGCTTGTCACACATGATATTGGGGAAGCGATAGCGATGAGCGATACGATCTTTTT < 2:3789305/140‑1 CCATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCACTGGAAAACCTGGTATTCCGCACATTAAAGGAGTATCAAAAAACTGCAGTGCTTGTCACACATGATATTGGGGAAGCGATAGCGATGAGCGATACGATCTTTTT < 2:724930/140‑1 AGCCTTCGGAAGGCAGAGTTCTGATTGAAGGCCGTGAGCCGAATCAAAAAGAACATAACATTGGCTACATGCTTCAGCAGGATTACTTATTTCCCTGGAAATCTATCGAGGAAAATGTGCTTCTCGGTTTAAAAATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/2935962‑2936101‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccATTTTCCGCGCTTGATTTTCAGACAAAGCTGTCACTGGAAAACCTGGTATTCCGCACATTAAAGGAGTATCAAAAAACTGCAGTGCTTGTCACACATGATATTGGGGAAGCGATAGCGATGAGCGATACGATCTTTTT > NZ_CP034943/2936272‑2936409 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |