| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,582,922 | C→A | 7.2% | A38E (GCA→GAA) | ylyA → | sporulation‑related RNA polymerase‑binding protein YlyA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,582,922 | 0 | C | A | 7.2% | 617.9 / 6.2 | 245 | A38E (GCA→GAA) | ylyA | sporulation‑related RNA polymerase‑binding protein YlyA |
| Reads supporting (aligned to +/- strand): ref base C (134/84); new base A (2/25); total (136/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.54e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 317 total aligned reads displayed.
CTACGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGCTCCCATTCCCCTTTCAAAG > NZ_CP034943/1582783‑1583061 | ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACACGCCCGCAcgcagc > 2:3169328/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:4316196/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:2428154/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:2633351/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:1494252/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:1170930/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:1002696/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:3906731/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:3959155/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:4661845/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:4918272/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 1:2584565/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 2:76452/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 1:1376618/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 1:1461922/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 1:1484949/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAagcagc > 1:2050232/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGATTTCAGGCTTCAACAAGCCCGCAagcagc > 2:4387886/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTAGAGATTATTTGAGTATTCTTGATTTCAGGCTTAAACAATCCCGCAagcagc > 2:2972754/1‑140 (MQ=255)ctacGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATAGATACGGAACTTCTTCTGACGACAGAAGAATTACAGGCGAGAGTCTTTGAGTATTCTTGCGTTCAGGCTTCAACAAGCCCGCAcccagc > 2:1061112/1‑140 (MQ=255) acGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGcaa > 1:2359543/1‑140 (MQ=255) acGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGcaa > 1:1106425/1‑140 (MQ=255) acGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGcaa > 1:900098/1‑140 (MQ=255) acGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTATTGCTTTCAGGCTTCAACAAGCCCGCAAGCACcaa > 2:2673337/1‑140 (MQ=255) cGTTAAGAGCAGGAGTTGTGATGACTGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGcaat < 1:4291852/140‑1 (MQ=255) ttAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGcaatca > 2:688379/1‑140 (MQ=255) agagCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCaatcaatc > 1:1788341/1‑140 (MQ=255) agCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCAt < 1:3027101/140‑1 (MQ=255) aGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAGGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTAAGGCTTCAAAAAGCCCGCAAGCAGCAATCAATCATaaa > 2:2923710/1‑140 (MQ=255) gaattGTGATGAATGAATGATCAACTGCCCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACa < 2:2095032/137‑1 (MQ=255) gAGTTGTTATTAATGAATGATAAACTGACCGAAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGATATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACa < 2:3719347/140‑1 (MQ=255) gAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACa > 2:3593256/1‑140 (MQ=255) gtgATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAg > 1:1930875/1‑140 (MQ=255) aatgaatgaTCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAActc > 1:3364705/1‑140 (MQ=255) tgaatgaTCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTg > 1:3933093/1‑140 (MQ=255) atgaTCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATc > 1:4781020/1‑140 (MQ=255) ataaaCTGACCGCAATATATACGTAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTAt < 2:3030817/137‑1 (MQ=255) aTCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTAt > 2:2194661/1‑140 (MQ=255) aTCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTAt < 2:4114657/140‑1 (MQ=255) aTCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTAt < 2:4236386/140‑1 (MQ=255) aTCAACTGACCGAAATATATACGTAACTTCTTCTGACGAAAGAATAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTAt < 2:4041105/140‑1 (MQ=255) cAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATca > 1:629582/1‑140 (MQ=255) cAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATca > 2:3308950/1‑140 (MQ=255) aaaCTGACCGCAATATATACTGACCTTCTGCTGACTAAATAACAATTAGATTCGATTTTATTTTTTTATTGTTGTTTCCCGGCTTCAACAACCCCGAAAGCAGCAATAAATCATAAAAAAAAAGCAACTCTGATCTATca < 1:4719968/139‑1 (MQ=255) aCTGACCTAAATATATCCGCAACTTATTCTGACTAAATAAGAATTAAAGTCTAGTTTTTTTGTTTTTTGTTGATTTCAGGCTAAAACAACCCCGCAAGCAGCAATCAATAATAAAAAAAACGCAACTCTGATCTATcaca < 1:4108951/140‑1 (MQ=255) aCCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCAGAACTATCACATTaa > 1:2468649/1‑140 (MQ=255) cAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATAAATCATAAACAAAAAGCAACTCTGATCTATCACATTAaagaa < 2:2555815/140‑1 (MQ=255) cAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGAAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAaagaa < 2:5187015/140‑1 (MQ=255) aaaTATATACGTAACTTCTTCTGACGAAATAATAATTACAGTCGATTTTATTTGATTATTCTTGCTTTCAGGCTTAAACAAGCCCGAAAGCAGAAATAAATAATAAACAAAAAGCAACTCTGATCTATCACATTAaagaa < 2:1433467/139‑1 (MQ=255) tatataCGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAagag > 1:2246161/1‑140 (MQ=255) ataCGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCtt > 1:354251/1‑140 (MQ=255) aCGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCa > 1:3180464/1‑140 (MQ=255) aCGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCa > 1:3447471/1‑140 (MQ=255) aCGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCa > 1:2840603/1‑140 (MQ=255) tgAACTACTTCTGACTAAAGAATAATTACAGTCCATATTATTTGATTATTCTTCATTACAGGCTTCAACACCCCCGAAAGCAGCAAACAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAg < 1:5177145/139‑1 (MQ=255) gAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGTCTTCAACAAGCCCGCAAGCAGAAATCAATCATAAACAAAAAGCAACTCGTATCTATCACATTAAAGAAGAGCTTAAAGa > 1:1659580/1‑140 (MQ=255) gAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGa > 2:175850/1‑140 (MQ=255) gAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGa > 1:3215651/1‑140 (MQ=255) aCTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACg > 1:4161959/1‑140 (MQ=255) aCTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACg > 1:395333/1‑140 (MQ=255) cttcttCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGAAATCAAACATAAACAACAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGt < 2:1623375/140‑1 (MQ=255) attcttaTGACGAAAGAAGAATTACAGTGGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCACGAAAGAAGAAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGt < 2:2703361/139‑1 (MQ=255) ttcttcTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGtt > 2:865696/1‑140 (MQ=255) ttcttcTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGtt > 2:4528449/1‑140 (MQ=255) ttcttcTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGtt > 2:169144/1‑140 (MQ=255) ttcttcTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGtt > 1:3855040/1‑140 (MQ=255) ttcttcTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGtt > 1:511866/1‑140 (MQ=255) gACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCg > 2:3384284/1‑140 (MQ=255) gACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTATCCTCg > 2:1123835/1‑140 (MQ=255) ccaaaCAAAAAATAAAGTCTACATTATTTCAGTATTCTTCTTTTACGCCTAAAAAAACCCCCCACGCAGAAATAAATCAAAAACAAAACGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCa < 1:2647176/138‑1 (MQ=255) tACAGTCTATATTATTTGATTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATc < 2:641979/140‑1 (MQ=255) gagaTTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACg > 1:5189831/1‑140 (MQ=255) agaTTTTTTGAGTTTTGTTGCTTTCAGGCTTCAACAAGCCCGCACGCAGAAATCAACCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACgg < 2:1968777/140‑1 (MQ=255) agaTTATTTGATTATTCTTGATTTCAGGCTTCAACAAGCCCGCAAGAAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACgg < 2:3502875/140‑1 (MQ=255) agaTTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACgg < 2:124535/140‑1 (MQ=255) tttattTGATTTTTCTTGCTTTCAGGCTTAAACACGCCCGCAAGCAGCAATCAATCATAAAAAAAACGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTa < 1:4661845/139‑1 (MQ=255) atttttTGAGTATTCTTGCTTTCAGGCTTCAACACGCCCGCACGCAGAAATCAAACATAAAAAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTa < 1:4591932/140‑1 (MQ=255) attattTGATTATTCTTGCTTTCAGGCTTCACCAAGCCCGCAAGCAGCAATCAATAAAAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTa < 1:4020440/140‑1 (MQ=255) attattTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTa > 2:3620772/1‑140 (MQ=255) attattTGAGTATTCTTGCTTTCAGGCTACAACAAGCCCGCACGCAGCAATAAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTa < 1:5063279/140‑1 (MQ=255) attattTGAGTATTATTGCTTTCCGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTa < 1:1028896/140‑1 (MQ=255) attaatTGATTATTGGTGCTTTCAGGCTACCACACCCCCGCACGCAGCAATCACTCATAAACAAAACGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTa < 1:4989931/140‑1 (MQ=255) gTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGAt > 2:1517983/1‑140 (MQ=255) aTTCTTGCTTTCAGCCTCAAAAAAGCCCCCACGCACCAAACAATCATAAACAAAAACCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATAc < 1:69806/140‑1 (MQ=255) tccggCTTCAACAAGCCCGCAAGCAGCCATCAAACATAAACAAAAAGCAACTCTGATCTATCACATTAAAGCAGAGCTTCAAGACGTTCTCCACGCAGTGTCCAAAATCGAAACCGGTACATTCGGGTACTGCGAAGaaa < 1:2633351/137‑1 (MQ=255) gCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTgg < 2:3786283/140‑1 (MQ=255) gCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTgg > 2:2841229/1‑140 (MQ=255) ttaaacaaGCCCGAAAGCAGAAATCAATAATAAAAAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGTTAACTTTAAATTCGTATTCTGGGTAGATACttttg < 1:76452/137‑5 (MQ=255) ttCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTgggg < 1:1002696/140‑1 (MQ=255) tacaacacGCCCGAAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTgggg < 1:4918724/138‑1 (MQ=255) tCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGc < 2:1376618/140‑1 (MQ=255) gCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAATAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGCTCCCAtt > 1:361753/1‑140 (MQ=255) ccGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGCTCCCATTcc < 2:5082327/140‑1 (MQ=255) ccGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGCTCCCATTcc < 2:3215651/140‑1 (MQ=255) caagcaATCAATCATAAAAAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGCTCCCATTCCCCTTTc < 1:807161/138‑1 (MQ=255) agcaATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGCTCCCATTCCCCTTTCaa > 2:4927057/1‑140 (MQ=255) gcaATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGCTCCCATTCCCCTTTCaaa < 2:5042457/140‑1 (MQ=255) gcaATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGCTCCCATTCCCCTTTCaaa < 2:558542/140‑1 (MQ=255) gcaATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATCCGGATACTGCGAAGAAACTGGGGCTCCCATTCCCCTTTCaaa > 2:2335629/1‑140 (MQ=255) caatcaatCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGTAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATAGTGCGAAGAAACTGGGGCTCCCATTCCCCTTTCaatg > 1:2757419/1‑138 (MQ=255) | CTACGTTAAGAGCAGGAGTTGTGATGAATGAATGATCAACTGACCGCAATATATACGGAACTTCTTCTGACGAAAGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGCTTCAACAAGCCCGCAAGCAGCAATCAATCATAAACAAAAAGCAACTCTGATCTATCACATTAAAGAAGAGCTTCAAGACGTTCTCCTCGCATTGTCCAAAATCGAAAACGGTACATTCGGATACTGCGAAGAAACTGGGGCTCCCATTCCCCTTTCAAAG > NZ_CP034943/1582783‑1583061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |