| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 2,962,633 | G→T | 5.8% | V313L (GTA→TTA) | EO946_RS15265 → | glycosyltransferase family 4 protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,962,633 | 0 | G | T | 5.8% | 850.2 / 9.4 | 301 | V313L (GTA→TTA) | EO946_RS15265 | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base G (145/130); new base T (2/24); total (147/154) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.20e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 303 total aligned reads displayed.
CATTCCAAATCTCTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACAAAAAACGGCCGGCACAATGTAGAATC > NZ_CP034943/2962494‑2962769 | cATTCCAAATCTCTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTg > 1:1241397/1‑140 (MQ=255)cATTCCAAATCTCTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTg > 1:3302955/1‑140 (MQ=255) ttCCAAATCTCTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTa < 1:1821411/140‑1 (MQ=255) tCCAAATCTCTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTGAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTac > 1:648053/1‑139 (MQ=255) aaaTCTCTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAAAACCTCTCCCGCCTGAATTATGAACCAATGGCGGCCGGAAAGCCCTTAATAACCACAAACAGGGGCGGAAACGGAGACGTTTTAAAac > 1:4341849/1‑140 (MQ=255) aTCTCTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAGACGGAGAGGTTGTAAAacac > 1:4853493/1‑140 (MQ=255) aTCTCTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAacac > 2:929287/1‑140 (MQ=255) tctcTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACg < 2:4957960/140‑1 (MQ=255) ggCAGCTGTATTTGTGTGCAGCTCTCAGTGGAATGAAACCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCATTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGcc < 2:1533615/140‑1 (MQ=255) ggCAGATGTATTTGTGTGCAGCTCTCAGGGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGCCAACGGcc < 2:2185961/140‑1 (MQ=255) ggCAGATGTATTTGTGTGCAGCGCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGACGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCACCGGcc < 2:4907255/140‑1 (MQ=255) atgtgtgtgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCg < 2:1817707/137‑1 (MQ=255) tttGTGTGCAGCTCTCAGTGGAATGATCCCCTCGCCCGCGTGAATTAGGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCCTCGa < 2:3847779/140‑1 (MQ=255) tgtgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCACTGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGc < 1:1387361/140‑1 (MQ=255) tgtgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGc < 1:114056/140‑1 (MQ=255) tgtgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGc < 1:3117206/140‑1 (MQ=255) tgtgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGc < 1:2286137/140‑1 (MQ=255) tgtgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACG‑AGTCAACGGCCTTGTCATCGACAGCt < 1:245933/140‑1 (MQ=255) gtgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACCAACCGGGGCGGAACCGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACCGCt > 2:2587790/1‑140 (MQ=255) gtgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCt < 2:718811/140‑1 (MQ=255) gtgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGCAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCt < 2:3410071/140‑1 (MQ=255) tgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCACTGGCGGCCGGAACGCCCTTAATTACCCCAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTa > 2:1748428/1‑140 (MQ=255) tgCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGACCGCCCTTAATTACCACAAACCGGGGCGGAACCGGAGAGGGTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTa > 1:333283/1‑140 (MQ=255) gCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTac > 1:1033369/1‑140 (MQ=255) ctctCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGTCAGCTacaaca < 1:3968467/140‑1 (MQ=255) ctctCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTacaaca < 1:3714713/140‑1 (MQ=255) ctctCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTacaaca < 1:4957745/140‑1 (MQ=255) ctcAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACaaa < 1:3444001/140‑1 (MQ=255) ctcAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACaaa < 1:458706/140‑1 (MQ=255) ctcAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACaaa < 2:3302955/140‑1 (MQ=255) aGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGTGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAAccc > 2:1914903/1‑140 (MQ=255) aaTGACCCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTc > 2:2969430/1‑140 (MQ=255) aaTGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTc > 2:2643616/1‑140 (MQ=255) aaTGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTc > 2:3047205/1‑140 (MQ=255) aaTGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTc > 1:5181915/1‑140 (MQ=255) aaTGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTc > 2:1700810/1‑140 (MQ=255) aaTGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTGAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTc > 2:1394096/1‑140 (MQ=255) tGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACg < 2:1598266/95‑1 (MQ=255) aCCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTg > 2:4974018/1‑140 (MQ=255) aCCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTg > 2:1225709/1‑140 (MQ=255) ccTCGCCCGCGTTAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCGTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGa < 2:2825255/140‑1 (MQ=255) ccTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGGCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTgaga > 1:4753567/1‑140 (MQ=255) ccTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTTTAAAACACGAAGTAAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGa < 2:2016244/140‑1 (MQ=255) ccTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGa < 2:3622194/140‑1 (MQ=255) ccTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGa < 2:149220/140‑1 (MQ=255) ccTCGCCCGCGTGAATTATGAAGAAATGGCGGCCGGAACGCCATTAATTACCACAACCCGGGGCGGAAACGTAGAGGTTGTAAAACACGAAGTCAACGGCCTGGTCATCGACAGCTACAACAAACCCACTTCATTTGCGa < 2:608164/140‑1 (MQ=255) cTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGaa > 1:1451941/1‑140 (MQ=255) cTCCCCCGCGGGAATTATGCAGCAATGGCGGCCGGACCGCCCTTCATTACCACAAACCGGGGCGGAAAGGGAGAGGTTGTAAAACTCGAAGTCACCGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGaa > 2:510631/1‑140 (MQ=255) cgcgTTAATTATGAAGCAATGGCGGCCGGACCGCCCTTATTTACCACAAACCGGGGCGGAAACGGTGAGGTTGTAAAACACGAAGTCACCGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAAt < 1:1707812/140‑1 (MQ=255) cgcgTGAATTATGAAGAAATGGCGGCCGTAACGCCCTTATTTACCACAAACCGGGGCGTAAACGGAGTGTTTTTAAAACACTAATTCAACGGCCTTGTCATCGACAGCTACACCAACCCCTCTTAATTTGCTAAAGAAAt < 1:1562322/140‑1 (MQ=255) cgTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCg > 2:626856/1‑140 (MQ=255) cgTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCg > 1:300963/1‑140 (MQ=255) tGAATTATGAAGCATTGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGGGTAAACGGCGTGGTTTTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGAc < 1:4503664/140‑1 (MQ=255) tGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACACACCGGGGCGGAAACGGAGAGTTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTGGGTAAAGAAATCgcc < 2:316819/140‑3 (MQ=255) tGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGAc < 2:4340909/140‑1 (MQ=255) tGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTAATTTGCGAAAGCAATCGAc < 2:2433680/140‑1 (MQ=255) ggAATTACGAACCACCGGCGGCCGGAACGCCATTAATTACCACAAACCGGGGCGGAAACGTAGATGTTGTAAAACCCGAAGTCAACGCCCTTGTCTTCGACAGCTACAACAAACCCCCTACATTGGCGAAAGCAATCGAc < 1:851300/139‑1 (MQ=255) acagttATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAACCCGGGGCGGAAACGGAGTGGTTTTAAAACACGAAGTCAACGGCTTTGTAATCGACAGATAAAACAAACCCTCTTCATTTGCGAAAGCAATCGAc < 1:3588396/136‑1 (MQ=255) agttATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCtt > 1:1670086/3‑90 (MQ=255) agttATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCtt < 2:5005259/88‑1 (MQ=255) agttATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCtt > 1:5005259/3‑90 (MQ=255) aaTTATGAAGCAATGGCGGCCGGACCGCCCTTAATTACCACACCCCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCGTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACag < 1:427856/140‑1 (MQ=255) aTTATGAAGCAATGGCGGCCGGAACGCCATTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACTAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACaga < 2:781932/140‑1 (MQ=255) ttATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGc > 1:2886217/1‑100 (MQ=255) ttATGAAGCAAGGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACagag < 2:557297/140‑1 (MQ=255) tATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGc < 2:4148916/140‑1 (MQ=255) tGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGccg > 2:4037844/1‑139 (MQ=255) aaGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCttt > 1:3921416/1‑140 (MQ=255) aGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACCAAGTCAACGGCATTGTCATCGACAGCTACAACAACCCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTa < 2:3587978/140‑1 (MQ=255) aGCAAGGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGTTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTa < 1:1421747/140‑1 (MQ=255) gCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAACCGGAGAGGTTGTAAAACACGACGTCAAGGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAATGCAATCGACAGAGCCTTTAc < 1:258025/140‑1 (MQ=255) cactGGCGGCCGGAACGCCCTTCATTACCCCACCCCGCGGCGCAAACGCAGCGGTTGTCAAACACGAAGTCAACGGCCTCGTCATCGACAGCTACAACAAACCCTCGTCATTTGCGAAAGCAATCTACAGAGCCTTTACa < 2:3690605/137‑1 (MQ=255) cAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGcc > 2:813349/1‑78 (MQ=255) ggcggcCGGAACGCCCTTAATTACCAAAAACCGGGGCGGAAACGGAGAGGTTTTAAAACACGAAGTAAACGGCCTTGTCATCGACAGATAAAACAAACCCTCTTCATTTGCTAAAGCAATCGACAGAGCCTTTACAGAcc < 1:2149930/140‑1 (MQ=255) gcCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACCGAGCCTGTACAGACCAAGa > 2:4685422/1‑140 (MQ=255) cGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGcc < 1:4175923/68‑1 (MQ=255) cGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTGCATTTGCGAAAGCAAGCGACAGAGCCTTTACAGACCAAGAAt > 2:390583/1‑140 (MQ=255) aaTTACCACAAACGGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTCCAACAATCCCTGTTGATTTGCGAAAGCAATCGTCAGAGCCTTTACAGACCAAGTGTTAATGTACcaaa > 2:4477007/1‑140 (MQ=255) aaTTACCACAAACCGGGGCGGAAACGGAGAGGTTTTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACaaaa < 1:305023/140‑1 (MQ=255) ccACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAAAAAAATcaca > 2:4228893/1‑140 (MQ=255) cacaAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACaa > 2:24906/1‑140 (MQ=255) cacaAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACaa > 2:1253782/1‑140 (MQ=255) cacaAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACaa > 2:3208899/1‑140 (MQ=255) cacaAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGACAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTACATTAGCGAAAGCAATCGACAGACCCTATACAGAACAAGAATTAATGAACAAAATCACaa > 2:4795089/1‑140 (MQ=255) caAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGAcc > 2:1340267/1‑114 (MQ=255) caAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACaaaa > 1:2934102/1‑140 (MQ=255) aaaCCGGGGCGGAAAGGGAGAGGTTGAAAAACAGGAAGTCACCGGCATCGTCATCTACACCAACAACAAACCCTCTTCATTTGCGAAAGAAATCTAAAGAGACTGTACACACCAAGAATTAATGAAAAAAAGCAcaacaa < 2:3975168/140‑1 (MQ=255) aaCCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACaaaaaa > 1:1976327/1‑140 (MQ=255) aCCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGc < 1:792339/100‑1 (MQ=255) aCCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGc > 2:792339/1‑100 (MQ=255) ggggCGGAAACGGTGTGGTTTTAAAACACGAAGTAAACGGCCTTGTCATCGACAGCTACAACAAACCCTTTTCATTTGCTAAAGCAATCGACAGAGCCTTTACAGACCAATAATTAATGAACAAAATCACAAAAAAcggc < 2:478641/140‑1 (MQ=255) gtaaaCGGAGAGGTTGTAAAACACGAAGTAAACGGCCTTTTCATCTACAGCTACAACAAACCCTCTTAATTTGCGAAAGCAATCGACTGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACAAAACACGGCCGGca < 2:2096046/138‑1 (MQ=255) ggAAACGGAGTGTTTGTAAAACACGATGTCAACGGCCTTGTCATGGACAGCTACAAAAAACCCTCTTAATTTGCGAAAGAAATCGACAGAGCCTTTACAGACCATGATTTAATGAACAAAATCACAAAAAACGGCCGGca < 2:3439345/140‑1 (MQ=255) ccacaCGCAGAGGTTGTAAACCCCGACGACAACGGGCTTCTCATAGACAGCGACAACAACCCCGCTTCATAGGCCAAACCAATCGACACAGCCTTTACAGAACAAGAATTAATGAACAAAATCACAAAAAACGGCCGGca < 2:4055611/136‑1 (MQ=255) aaaCGGAGAGGTTTTAAAACACGAAGTAAACGGCCTTTTAATCGACAGCTAAAACAAACCCTCTTAATTTGCTAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACAAAAAACGGCCGGcaca < 2:1033369/140‑1 (MQ=255) cGGAGAGTTTGTAAAACACGAAGTAAACGGCCTTGTCATCGACAGATACAAAAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACAAAAAACGGCCGGCACAATg < 2:3837481/140‑1 (MQ=255) cGGAGAGGTTGAAAAACACGAAGTCAACGCCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACCGACCAAGAATTAATGAACAAAATCACAAAAAACGGCCGGCACAATg < 2:3140720/140‑1 (MQ=255) gTTTTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGAc < 1:2725241/75‑1 (MQ=255) gTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGAc > 2:2725241/1‑75 (MQ=255) gTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACAAAAAACGGCCGGCACAATGTAGAATc > 1:4054299/1‑140 (MQ=255) | CATTCCAAATCTCTTTCTGATGGCAGATGTATTTGTGTGCAGCTCTCAGTGGAATGAACCCCTCGCCCGCGTGAATTATGAAGCAATGGCGGCCGGAACGCCCTTAATTACCACAAACCGGGGCGGAAACGGAGAGGTTGTAAAACACGAAGTCAACGGCCTTGTCATCGACAGCTACAACAAACCCTCTTCATTTGCGAAAGCAATCGACAGAGCCTTTACAGACCAAGAATTAATGAACAAAATCACAAAAAACGGCCGGCACAATGTAGAATC > NZ_CP034943/2962494‑2962769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |