| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,559,345 | T→G | 7.2% | N205H (AAC→CAC) | EO946_RS18295 ← | SpaA isopeptide‑forming pilin‑related protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,559,345 | 0 | T | G | 7.2% | 715.4 / 4.1 | 297 | N205H (AAC→CAC) | EO946_RS18295 | SpaA isopeptide‑forming pilin‑related protein |
| Reads supporting (aligned to +/- strand): ref base T (129/130); new base G (36/2); total (165/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.78e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 317 total aligned reads displayed.
AATCATCACTCTTAGAAGAATCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCAGTAAACGTGGCT > NZ_CP034943/3559207‑3559484 | tcaCTCTTAGAAGAATCGCCACCCTTAGTGTCAGCTGATGCCTGTTGGTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCgg < 2:576253/140‑1 (MQ=255) caCTCTTAGAAGAATCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGc > 1:1003255/1‑140 (MQ=255) ctTAGAAGAATCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGttttt > 1:3804018/1‑132 (MQ=255) agaagaATCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTCTTCCg > 1:32802/1‑140 (MQ=255) agaagaATCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTTGGGTCTTACg > 1:3040969/1‑140 (MQ=255) agaagaATCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTGGGCGCTTGCg > 1:5123845/1‑140 (MQ=255) aagaaTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTGGGCTCTTGCGtg > 2:1908992/1‑139 (MQ=255) aagaaTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTGTTAGGCTCTTACGtc > 2:729845/1‑140 (MQ=255) agaaTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTCTTCCGtct > 1:4257829/1‑140 (MQ=255) aTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGTTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTAGGCTCTTACGtatagg > 2:4673370/1‑135 (MQ=255) aTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGTGTCGTGTTTCGGCACTTCCGGCTCgg > 2:5200296/1‑140 (MQ=255) aTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTGGGCTCTTCCGTCTCgg > 1:4948370/1‑140 (MQ=255) aTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCgg > 2:2607317/1‑140 (MQ=255) aTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTACGTGTCgg > 2:2737909/1‑140 (MQ=255) aTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTACGTCTCgg > 1:3355536/1‑140 (MQ=255) aTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTGGTACGTCTCgg > 2:223990/1‑140 (MQ=255) aTCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTCTTGCGTCTCgg > 2:4467527/1‑140 (MQ=255) tCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTGGGCTCTTCCGTCTCGGc > 1:3443419/1‑140 (MQ=255) ccACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGAGTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTCGGCTCTTACGTCTGGGCCTc > 1:2946391/1‑140 (MQ=255) caacgttAGTGTTAGCTGAGTCCTGGTGTTGTTTCTCTTTTTTGTCCTGGCTGTCTTAAGGTTCATATTTGTCATCTGTGCATTCCTGATCTCGGGCAGTTTCAGTATAGTGGTTTTTCGGCTCTTCCGTCTGGGAATCt < 2:2176354/135‑1 (MQ=255) cACCCTTAGTGTCAGCTGATGCCTGTTGTACTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCt < 2:4583795/140‑1 (MQ=255) tAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTCGGCTCTTCCGTCTCGGCCTCTGGTGtc > 1:4870374/1‑140 (MQ=255) aGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTCTTCCGGATCGGCCTCTGGTGtcg > 1:2432048/1‑139 (MQ=255) aGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTAGGGTCTTCCGTCTCGGCCACTGGGGtct > 1:5205646/1‑140 (MQ=255) aGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTTGGGTGTTACGTGTCGGCATCTGGTGTGTCAtatt > 1:1554012/1‑140 (MQ=255) aGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTGGGCTCTTCCGTCTCGGCATCTGGTGTATCaaatt > 1:4483331/1‑136 (MQ=255) aGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCtt > 1:2373047/1‑113 (MQ=255) aGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCtt < 2:2373038/113‑1 (MQ=255) aGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTGCGTCTCGGCCTCTGGTGGCTCAactt > 2:1299445/1‑140 (MQ=255) aGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTCTTGCGTCTCGGCCTCTGGTGTCTCAtatt > 1:902311/1‑140 (MQ=255) aGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTGGGCGCGTGCGTCTCGGCCTCTTGTGTCTCAtctt > 1:1811552/1‑140 (MQ=255) aGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCGCAtctt > 2:316435/1‑140 (MQ=255) tGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCAtctttct < 2:2625682/140‑1 (MQ=255) tGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCAtctttct < 2:3724723/140‑1 (MQ=255) aTGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTCGGCGCTTCCGTCTCGGCATCTGGTGTCTCATATTTGTTa > 1:1421768/1‑140 (MQ=255) tGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTaa < 1:4387257/140‑1 (MQ=255) tGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGGTCTTCCGTCTCGGCATCTGGTTTATCAtctttcttta > 2:3687510/1‑138 (MQ=255) cgCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCACGGCATCTGGTGTCTCATCTTTCTTaa > 2:3659940/2‑140 (MQ=255) cggttgttCCTCCTCGATTGGCTCCTTGCTGAATGAAGGTGCAGATTTTTGATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAg < 2:3009469/138‑1 (MQ=255) cTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAg < 2:4108365/140‑1 (MQ=255) cTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAg < 2:97032/140‑1 (MQ=255) cTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTAGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAg < 1:4673370/140‑1 (MQ=255) ttgttCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGttt < 2:3354885/91‑1 (MQ=255) ttgttCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGGTCTTGCGTCTCGGCAGCTGGTGTCTCATCTTTCTTAACAGGga > 2:3791967/1‑140 (MQ=255) ttgttCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGGTCTTACGTCTCGGCATCTGGTGTGTCATATTTATTAAAAGGga > 1:2675/1‑140 (MQ=255) ttgttCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTCGTCCGTCTCGGCATCGGGTGTCTCATATTTCTTAAAAGGga > 1:207765/1‑140 (MQ=255) ttgttCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTATGGGCATACCTCTCGGCAACTGGTTTCTAAACTATATTAAAACGga > 1:10760/1‑140 (MQ=255) ttcttcCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGgatga > 2:2012197/1‑140 (MQ=255) ttcttcCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTATTTCGTGTCGGCATCTTGTGTCTCATATTTTTTTACAGGgattt > 2:5128872/1‑138 (MQ=255) cttcCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTTGGGGCTTCCGTCTCGGCATCTTGTGTATCATATTTCTTAAAAGGgatgtta > 1:2864302/1‑137 (MQ=255) cttcCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTACGTCTCGGCATCTGGTGTGTCATATTTATTTAAACGGCTGATc > 2:2131513/1‑140 (MQ=255) cttcCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCGCTTGCGTGTCGGCATAAGGTGTCTCAACTTTATTTAAATGGATGATc > 1:994868/1‑140 (MQ=255) tcCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCAc < 2:1886140/140‑1 (MQ=255) ccTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTGGGCTCTTCCGTCTAGGCATCTGGTGTCACATCTTTGTTAAAAGGGATTATCaaa > 2:686234/1‑138 (MQ=255) tctTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTCTTACGGATAGGCATCTGGTGTCTCATCTTTATTAACAGGgatgataaacgg > 2:1719536/1‑134 (MQ=255) gCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGtt < 1:2125767/140‑1 (MQ=255) ttGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTGGGCTCTTACGTCTCGGCAAATTGTGTGTCATCATTGTTAAAAGGGGTGATAACCAGCTGGGtttttgc > 1:501014/1‑137 (MQ=255) ttGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGcc < 1:2732069/140‑1 (MQ=255) tGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCt < 1:2314317/140‑1 (MQ=255) gTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCGGGTCCGTCGCGGCCGCTGGTGGGTGATATTTCGTAAAACGGATGATCACCGGCAGGGTTTTTGCTCCCCCGAGttta > 1:328639/1‑138 (MQ=255) gCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCGCGTCCGTCTCGGCATCTGGTGGGTCATGTTTCTTTAAAGGGATGATCACCGGCTGGGGTTTGGCTCCCCCTAGTTGaaa > 1:4167438/1‑140 (MQ=255) cAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTGGGCTCTTCCGTCTGGGCAGCTGGTGTGTCATGTTTGTTAACAGGGGTGATCACCAGCTGGGTTTTTGCTCCCCCAAGTTGtaaa > 1:2187832/1‑140 (MQ=255) cAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTCGGCGCGTGCGTCTCGGCATCTGGTGTCTCAAATTTGTTAAAAGGGATTATCACCAGCGTGGTTTTTACTACCCCTAATTTaaaa > 2:2492732/1‑140 (MQ=255) taTTTGTCATCTGTCCCTTCCTGATCACCCGCAGTGTCATAAGAGTCGTGTTTCGGCTCTTCAGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAg < 2:4053625/139‑1 (MQ=255) gttttGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGTGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAg < 2:5181985/138‑1 (MQ=255) tttGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTg > 2:1140399/1‑74 (MQ=255) tttGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAggg < 1:537430/140‑1 (MQ=255) tttGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAggg < 1:1891224/140‑1 (MQ=255) ttGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGgc < 2:3924766/140‑1 (MQ=255) ttGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTCGGGTCGTCCGTCTCGGCATCTGGTGTGTCAACTTTCTTAACAGGGATGTTAACCTGCTGGGTTTTTCCTCCCCCTAGTTGAAAAAGGgc > 1:3916763/1‑140 (MQ=255) gTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGgctg < 1:1719536/140‑1 (MQ=255) gTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGgctg < 1:1770799/140‑1 (MQ=255) gTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGgctg < 2:4719026/140‑1 (MQ=255) gTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGgctg < 2:5012711/140‑1 (MQ=255) gTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGgctg < 1:4071501/140‑1 (MQ=255) gTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGgctg < 1:607539/140‑1 (MQ=255) tCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGgctgc < 1:666808/140‑1 (MQ=255) tCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTAc < 2:4883727/140‑1 (MQ=255) tGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTCGGGGCGTCCGGCTCGGCAGCTGGTGTGTCATAGTTATTAACAGGGATGATCACCGGCAGGGGTTTTGCTCCCCCGACTTTAAAAAGGGCGGCGACTg > 1:2007393/1‑140 (MQ=255) tCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTGGGCTCTTCCGTCTCGGCATCTGGTGTGTCATCGTTATTAAAACGGATGATCACCAGCGGGGTTTTTGCTCCCCCCAGTTGGAAAAGGGCGGGTACTGTa > 1:115263/1‑140 (MQ=255) tCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTGTTTCGGCTCTTACGTCTCGGCATCTGGTGTCTCATATTTGTTAACAGGGATGATGACCGGCTGGGTTTTTCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTa > 2:802634/1‑140 (MQ=255) cTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCAt < 1:3173978/140‑1 (MQ=255) gATCACCCGCAGTTTCAGAAGAGTCGTTTTTAGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCg < 1:3691490/140‑1 (MQ=255) aTCACCCGCAGTTTCAGAAGAGTCGTGTTTGGGCTGTTGCGTCTGGGCATGAGGTGTCGGATCTTTCTTAAAAAGGATGATCACCAGCTGGGGTTTGCCTCCCCCGAGTTGAAAAAGGGCTGCTACGGTCTGTTCAACgg > 2:4589722/1‑139 (MQ=255) cACCCGCAGTTTCAGAAGAGTCGTTTTTCGGGTCTTACGTGTCGGCATGTGGTGTGTCATCTTTATTAACAGGGATGTTCACCGGCTGGGTTTTGGCTCCCCCCACTTTTAAAAGGGCTGCTACTGTGTGTGCATCGTCt > 1:3866602/1‑140 (MQ=255) gCAGTTTCAGAAGAGTCGTTTTTCGGCGCTTCCGTGTCGGCATCGGGTGTGTCATATTTGTTAAAAGGGATGATCACCGGCTGGGTTTTGCCTCCCCCGAGTTGTAAAAGGGCTGGTACTGTATGTTAAACGTCTTTTaa > 2:852901/1‑139 (MQ=255) gTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATc < 1:735255/140‑1 (MQ=255) gTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATc < 1:2607317/140‑1 (MQ=255) gTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATc < 2:1387651/140‑1 (MQ=255) gTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTCGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATc < 1:2753079/140‑1 (MQ=255) gTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCCGCAGATGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATc < 2:2381756/140‑1 (MQ=255) cAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCa < 1:1229813/140‑1 (MQ=255) cAGAAGAGTCGATTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTCACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGCGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCa < 2:533005/140‑1 (MQ=255) aagaagaTTGGTTTTTCGGCTCTTCAGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTATTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCa < 1:2492732/139‑1 (MQ=255) agagTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCAGTaa < 1:1334002/140‑1 (MQ=255) tttttCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCAGTAAACGTGGc < 1:1598342/140‑1 (MQ=255) tttttCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCAGTAAACGTGGc < 2:1518825/140‑1 (MQ=255) tttttCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCAGTAAACGTGGc < 2:1590132/140‑1 (MQ=255) ttttCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCAGTAAACGTGGCt < 2:322279/140‑1 (MQ=255) ttttCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCAGTAAACGTGGCt < 2:3894658/140‑1 (MQ=255) | AATCATCACTCTTAGAAGAATCGCCACCCTTAGTGTCAGCTGATGCCTGTTGTTCTTCCTCTTTTTGCTCCTTGCTGACTGAAGGTGCAGATTTGTCATCTGTCCCTTCCTGATCACCCGCAGTTTCAGAAGAGTCGTTTTTCGGCTCTTCCGTCTCGGCATCTGGTGTCTCATCTTTCTTAACAGGGATGATCACCTGCTGGGTTTTGCCTCCCCCTAGTTGAAAAAGGGCTGCTACTGTATGTTCATCGTCTTTTACATCTGCAGTAAACGTGGCT > NZ_CP034943/3559207‑3559484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |