| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | 607566 = | 157 (0.840) | 9 (0.050) +CGCTCCGGT |
4/252 | 9.2 | 6.0% | coding (409/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607637 | 147 (0.780) | coding (480/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAGCCCCTGTGGCTCCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/607584‑607566‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGTCGCTCCAGCTGGTCCAGCTTC < NZ_CP034943/607637‑607500 ||||||||| TAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCGTCCCCCGTAGCCCCGGTGGCTCCGGGGGGTCCGGGTGGTCCGGCTTCGCCGGTAGCTCCGGGCGCT > 1:1227319/1‑140 CCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGG > 2:663125/1‑42 ccGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGC < 2:1984981/56‑1 GTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGC > 1:540471/1‑65 GTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGC < 2:540471/65‑1 TGGCTCCTGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGT > 2:2606001/1‑73 TGGCTCCTGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGT > 2:638582/1‑73 CTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACTTCCCCAGT > 2:1704781/1‑70 CCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCG > 2:580778/1‑85 CTCCGGGTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCCCCGGATGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGTCGCTCCAGCTGGTCCA < 1:1128561/140‑1 CCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACTTCCCCAGT > 1:619501/1‑59 GGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCG > 1:1522618/1‑46 GGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCG < 2:1522618/46‑1 GTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGTCGCTCCCGCTGGTCCAGCTTC < 2:1557560/140‑1 GTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGTCGCTCCAGCTGGTCCAGCTTC > 1:1557560/1‑140 ||||||||| TAGCCCCTGTGGCTCCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/607584‑607566‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGTCGCTCCAGCTGGTCCAGCTTC < NZ_CP034943/607637‑607500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |