BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	2411159 =	256 (1.050)	4 (0.020)	4/232	NT	1.7%	coding (635/924 nt)	spoIIIAA	stage III sporulation protein AA
*	?	NZ_CP034943	= 2411155	241 (1.080)	4 (0.020)	4/232	NT	1.7%	coding (639/924 nt)	spoIIIAA	stage III sporulation protein AA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 283 total aligned reads displayed.

GCTTCATCAGGTCGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCAATA  >  NZ_CP034943/2411016‑2411294

gCTTCATCAGGTCGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGa                                                                                                                                             >  1:2044840/1‑140 (MQ=255)

 cTTCATCAGGTCGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAa                                                                                                                                            >  2:443819‑M2/1‑139 (MQ=255)

  atcatcagGTCGGATATGCTAAATAAATGAGCCTAGACGATAACTGAAAAACCTGCATGCAGCGCAACAAGAACTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAat                                                                                                                                           <  2:1120658‑M2/139‑3 (MQ=255)

     ctcaGGTCGGATCTGCTCCAGCAATGCGCCTAGAAGATAACTGAAACACCTGCATGGAGCGGCTCAAGAAGTGCATCTGTATATTACTCACGCCGGATTTCATCGTCAATGATCTCCTCAGGGCTCAGGGATCGAatcat                                                                                                                                        <  2:2151090/139‑1 (MQ=255)

     atcaGGTCGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAatcat                                                                                                                                        >  2:3613161‑M2/1‑135 (MQ=255)

          gTCGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAatcatcatca                                                                                                                                   <  1:2151033‑M2/140‑11 (MQ=255)

          gTCGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAatcatcatca                                                                                                                                   <  1:2060442‑M2/140‑11 (MQ=255)

            cGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAatcatcatcatc                                                                                                                                 >  2:3188254/1‑140 (MQ=255)

               atatGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGc                                                                                                                              >  2:4001909/1‑140 (MQ=255)

                    cTCCAGCCATGCGCGGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTAGCTTCCAGACGCCCGATTTCATCGACACTGATCACCTCAGGGCTCATGGATCGAGGCATCATCATCAGCCCCTc                                                                                                                         >  2:1106189/1‑140 (MQ=255)

                    cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                         >  2:1961417/1‑140 (MQ=255)

                    cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                         <  1:827723/140‑1 (MQ=255)

                    cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                         >  2:208121/1‑140 (MQ=255)

                    cTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTc                                                                                                                         <  2:3930451/140‑1 (MQ=255)

                        aGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGcc                                                                                                                     >  2:2731626/1‑140 (MQ=255)

                         gCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCa                                                                                                                        >  1:3943909/1‑136 (MQ=255)

                         gCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCt                                                                                                                    >  1:188377/1‑140 (MQ=255)

                         gCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCt                                                                                                                    >  1:2864609/1‑140 (MQ=255)

                         gCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCt                                                                                                                    >  2:2727345/1‑140 (MQ=255)

                              gcgcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGa                                                                                                               <  1:4019116/140‑1 (MQ=255)

                              gcgcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGa                                                                                                               <  2:3100342/140‑1 (MQ=255)

                              gcgcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGa                                                                                                               <  1:3303663/140‑1 (MQ=255)

                              gcgcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGa                                                                                                               <  1:3074041/140‑1 (MQ=255)

                               cgcCGAGACTATAACTGAAACACATGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGTTTTAATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGAc                                                                                                              >  1:100435/1‑140 (MQ=255)

                               cgcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGAc                                                                                                              >  2:3004299/1‑140 (MQ=255)

                               cgcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGAc                                                                                                              >  2:1984797/1‑140 (MQ=255)

                                gcCGAGACGATAACTGAACCACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACa                                                                                                             <  2:2598705/140‑1 (MQ=255)

                                gcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACa                                                                                                             <  2:2423809/140‑1 (MQ=255)

                                gcCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACa                                                                                                             <  2:484889/140‑1 (MQ=255)

                                 ccGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCCGCCCCTCAGCCTTTGGACAg                                                                                                            <  2:2915677/140‑1 (MQ=255)

                                 ccGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAg                                                                                                            <  2:3657589/140‑1 (MQ=255)

                                   gagaCGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGc                                                                                                          <  2:403478/140‑1 (MQ=255)

                                   gagaCGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGc                                                                                                          <  2:2361496/140‑1 (MQ=255)

                                    agaCGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGc                                                                                                          >  2:1848242/1‑139 (MQ=255)

                                          tAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAAt                                                                                                   >  1:3258691/1‑140 (MQ=255)

                                           aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                  <  1:3572746/140‑1 (MQ=255)

                                           aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                  <  1:1201510/140‑1 (MQ=255)

                                           aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                  <  2:3484033/140‑1 (MQ=255)

                                           aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                  <  1:2454712/140‑1 (MQ=255)

                                           aaCTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCCGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCAACAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                  <  1:782192/140‑1 (MQ=255)

                                                aaaCACCTGCATGCAGCGCCTCAAGAATTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATCCGTCa                                                                                             >  2:1818009/1‑140 (MQ=255)

                                                     ccTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCct                                                                                        <  1:1116780/140‑1 (MQ=255)

                                                     ccTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCct                                                                                        <  1:2997263/140‑1 (MQ=255)

                                                        gcatgcaGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTaa                                                                                                    >  1:3703588/1‑125 (MQ=255)

                                                        gcatgcaGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTg                                                                                     >  1:933330/1‑140 (MQ=255)

                                                          atgcaGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTc                                                                                   <  1:70425/140‑1 (MQ=255)

                                                              aGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCaaa                                                                               >  1:3151911/1‑140 (MQ=255)

                                                              aGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCaaa                                                                               >  2:1751862/1‑140 (MQ=255)

                                                              aGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCaaa                                                                               >  2:3387355/1‑140 (MQ=255)

                                                                cgcCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCACAtt                                                                             >  1:3884500/1‑140 (MQ=255)

                                                                cgcCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAAtt                                                                             >  1:2594417/1‑140 (MQ=255)

                                                                    tCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCGGTCCAAATTGAtg                                                                         <  1:1366348/140‑1 (MQ=255)

                                                                         aagTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCg                                                                    <  1:2782644/140‑1 (MQ=255)

                                                                            tGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGaa                                                                 >  1:3116566/1‑140 (MQ=255)

                                                                            tGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGaa                                                                 >  2:3819418/1‑140 (MQ=255)

                                                                            tGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGaa                                                                 >  1:3466909/1‑140 (MQ=255)

                                                                             gCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATa                                                                                                  <  2:2190416/106‑1 (MQ=255)

                                                                             gCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAAt                                                                >  2:1618720/1‑140 (MQ=255)

                                                                              cATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATg                                                               <  2:1519161/140‑1 (MQ=255)

                                                                                tCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGcc                                                             >  2:1944741/1‑140 (MQ=255)

                                                                                   gTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTg                                                                            >  1:2755248/1‑122 (MQ=255)

                                                                                   gTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCcgcg                                                          >  2:1585014/1‑140 (MQ=255)

                                                                                         tCCACACGCCCGCTTTCATCGACAATGATCACCTCAGGGCTCCGGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTGTACTACGTCCAGCCTCGGTCCAACGAGCTGCTGCGGACGGCCGGGCCGGCa                                                    >  2:1379027/1‑140 (MQ=255)

                                                                                         tCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCa                                                    >  2:672925/1‑140 (MQ=255)

                                                                                          ccACACGCCCGATTTCATCGACACTGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAAGCCACTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCAt                                                   <  2:2784302/140‑1 (MQ=255)

                                                                                           cacaCTCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCATCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATc                                                  >  2:3412030/1‑140 (MQ=255)

                                                                                           cacaCGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAatcatcatcagcccctcagcctttggacaggcgtctaatacgtcaatcctctgtccaaattgatgctgcggaatgccgcgcaggcatccgg                                                  <  2:711157‑M2/140‑92 (MQ=255)

                                                                                           cacaCGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATc                                                  >  2:835943/1‑140 (MQ=255)

                                                                                              acGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCgg                                               <  2:1973144/140‑1 (MQ=255)

                                                                                                  ccGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCCTCCGGCAAt                                           >  2:3133999/1‑140 (MQ=255)

                                                                                                  ccGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAAt                                           >  2:2554959/1‑140 (MQ=255)

                                                                                                                aaTGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAg                                                                                                            <  1:544435/61‑1 (MQ=255)

                                                                                                                   gATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTcga                          <  1:3819418/140‑1 (MQ=255)

                                                                                                                   gATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTcga                          <  2:3466909/140‑1 (MQ=255)

                                                                                                                         cTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTc                    <  1:2336197/140‑1 (MQ=255)

                                                                                                                           cAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCt                  <  2:1894322/140‑1 (MQ=255)

                                                                                                                            aGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGc                                                                                                          <  2:124756/51‑1 (MQ=255)

                                                                                                                            aGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGc                                                                                                          >  1:124756/1‑51 (MQ=255)

                                                                                                                            aGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTg                 >  2:3673236/1‑140 (MQ=255)

                                                                                                                              ggCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTc               >  1:2262430/1‑140 (MQ=255)

                                                                                                                              ggCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTc               >  1:2087739/1‑140 (MQ=255)

                                                                                                                              ggCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTc               >  1:1982654/1‑140 (MQ=255)

                                                                                                                                  cATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTa           <  1:2727518/140‑1 (MQ=255)

                                                                                                                                  cATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTa           <  1:1944741/140‑1 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTcga                          >  2:2280943/1‑124 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCt                  >  1:2377736/1‑132 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCt                  <  2:1695471/132‑1 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCt                  >  1:3631655/1‑132 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc          >  2:2628304/1‑140 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc          >  1:1523324/1‑140 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc          >  1:1827590/1‑140 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc          >  2:3887784/1‑140 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc          >  2:3762895/1‑140 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc          >  2:2482454/1‑140 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAAGTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTAc          >  1:1664561/1‑140 (MQ=255)

                                                                                                                                   aTGGATCGAATCATCATCATCAGCCCCTAAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCCCGCAGGCATCCGCCAATTTCTGACCGTTCGTCGACGATTCCTCTCATTAc          >  2:3239478/1‑140 (MQ=255)

                                                                                                                                      gATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAATTGGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACggg       <  2:2821497/140‑1 (MQ=255)

                                                                                                                                       aTCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGc      <  2:2521343/140‑1 (MQ=255)

                                                                                                                                        tCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCa     <  1:1958913/140‑1 (MQ=255)

                                                                                                                                        tCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCa     >  2:776550/1‑140 (MQ=255)

GCTTCATCAGGTCGGATATGCTCCAGCCATGCGCCGAGACGATAACTGAAACACCTGCATGCAGCGCCTCAAGAAGTGCATCTGTATCTTCCACACGCCCGATTTCATCGACAATGATCACCTCAGGGCTCATGGATCGAATCATCATCATCAGCCCCTCAGCCTTTGGACAGGCGTCTAATACGTCAATCCTCTGTCCAAATTGATGCTGCGGAATGCCGCGCAGGCATCCGGCAATTTCTGACCGTTCGTCGACGATTCCTGTCTTTACGGGCAATA  >  NZ_CP034943/2411016‑2411294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.