| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 112,591 | A→T | 8.7% | intergenic (+269/‑35) | gltX → / → cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 112,591 | 0 | A | T | 8.7% | 1657.2 / 21.3 | 586 | intergenic (+269/‑35) | gltX/cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (136/379); new base T (48/2); total (202/384) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.56e-23 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 587 total aligned reads displayed.
TCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACATGC > NZ_CP034943/112455‑112729 | aGTATTCAATGGCGGCCGCCGGCGTTACAGTCTGAAGTTTGGAGAGCATAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGTgg < 2:4948421/140‑1 (MQ=255) aGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAgg < 2:545909/140‑1 (MQ=255) aTTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAAGCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGaaa < 2:4515540/140‑1 (MQ=255) ggcggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATa < 2:5714063/140‑1 (MQ=255) cggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCACACCGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCTTGCAGAGGCGC‑TTTTTTTATTGGGTGTCGAGGAACTCAAAgaga > 1:2207578/1‑140 (MQ=255) ggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATagag < 2:2039008/140‑1 (MQ=255) ggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATagag < 2:2753206/140‑1 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCCGAGGCGC‑TTTTTTTATTGGGTGAGGAGGCAATCCAATAgaga > 2:4747076/1‑140 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGTAGAGGGAATCAAATagagt > 1:4177336/1‑139 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAgaga > 1:3324071/1‑140 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAAAAgaga > 2:1963863/1‑140 (MQ=255) gcgccgccgTTACCGGCTGAAGTTTGGAGCTCAGATGTCTGGTTTTCAACCAGCGGGGAACCGCGCGGTTTAATCGTCTCTGTCATGTTTTCATGGAGATGCTG‑TTTTTTTATTGGGTTAAGAGGAAAACAAATAcagat < 2:3167880/139‑2 (MQ=255) ccgccgccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGTAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTGGGTTAAGAGGAAATCAAATAGAGaa < 2:5064364/140‑1 (MQ=255) ttACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGa < 1:4671126/140‑1 (MQ=255) cAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGc < 1:1858094/140‑1 (MQ=255) cAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGc < 1:1246066/140‑1 (MQ=255) tGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTTAAGAGGAAAAAAAATACAGTAGTGGGGGGAAGCAagtt > 1:5598980/1‑139 (MQ=255) gTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGtttt < 1:802117/140‑1 (MQ=255) gagaGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 2:2555324/140‑1 (MQ=255) gagaGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:3866702/140‑1 (MQ=255) gagaGCAGAAGTCTGCTTTTAAAACAGAGTGGAACCGCGGGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCAGGTGTTTTTTAGa < 1:5209335/140‑1 (MQ=255) aGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTc < 1:4418506/140‑1 (MQ=255) aGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTCTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTc < 1:4069686/140‑1 (MQ=255) gTCTGCTTTTCACACTGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATAAAATAGAGCAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaag < 2:3752890/140‑1 (MQ=255) cTGGTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGTCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:34804/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:3693643/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:1519462/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:1666306/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:3329585/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTGATTGGGTGAAGAGGAAAGCAAATAGAGCAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:3055811/140‑1 (MQ=255) tGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGGGTAGAGGTAATCAAATATAGAAGTGGGGGGCAGCATGTGTTTTTTATAATTCTCAaataaa > 1:4516518/1‑139 (MQ=255) tGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTGGGTGTAGAGGAAATCAAATATAGAAGTGGGGGGAACCCGGTGTTTTTTTGTATTGTCAaataaa > 1:1888194/1‑139 (MQ=255) tGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑GTGTTTTTTTTGGTGTATGGGGAATCAAAAATAGAAGTGGGGGGAAGCATTTGGTTTTTTGAATTCTCAaagaac > 1:473292/1‑139 (MQ=255) gCTTTTCTAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATTCAGAGTCGC‑TTTTTTTATTGGGTGAATAGGAAATCAAATAGAGAAGGGGGGGGAAGAATGTGTTTTTTAGAATGCTCAAagaaga < 2:1401101/140‑1 (MQ=255) gCTTTTCAAGCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAAACAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:2659850/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGGGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:2363702/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTGATGTTTTCATGCAGAGGAGC‑TTTTTTTATTGGGTGAAGAGCAAATCACATAGAGAAGTGGGGCGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:4824053/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGATAAAGCGTCTCTGTCATGTTTTCCTGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagcaga < 1:2509285/140‑1 (MQ=255) aaCTGAGTGGAACCGCGCGGTTTAAGAGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:5479823/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGACATCACATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:1077712/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:2679267/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:1222995/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTATCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:5082916/140‑1 (MQ=255) aCAGTGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTTATTGGGTGAAGAGGAAAACACATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:1015190/140‑1 (MQ=255) agTGGAACCGCGCGGTTTAAGCGTCTCTGGCAAGATTTCATGCCCAGGCGC‑TGTTTGTAGTGTGTGAAAAAGACAACCAATATAGTAGAGGGGGGAAGCCTGTGTTATTTAGAAATATCAACTAAGACATAGATACAgtg > 2:5156386/1‑140 (MQ=255) aCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGAt < 2:4043411/140‑1 (MQ=255) cgcgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCa < 2:4352658/140‑1 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGTGAAGTGGAAATAAAATAGATAAGTGGGGGGGAGCATGTGTTTTTTTTAATTCTAAAAATAAAAAATTATAAATTGTTCGAACaat > 1:2832304/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGTAGAGGGAATGAAATAGAGAACTGGGGGGGAGCATGTGTTTTTTTTAAAGCTCAAAAAACACATTTTTACATTTTTCTATaaat > 1:400952/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGTAGAGGAAATCCAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTTGAATGCTCAAAGAAGACATTGATACCTTGTTCGATCaat > 2:4225705/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TGTTTTTATTGGGTGAAGATGAAATCAAATATAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTAAAAGAAGACATTGATAAATTGTTCGATCaat > 2:1089671/1‑139 (MQ=255) cgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGAt < 1:5378792/140‑1 (MQ=255) tctcTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTT‑TTTGGTGGAGAGGTAAACAAAAAAAGAACTGGGGGGGAACAAGTGTTTTTTTTAAATATCAAAGAAAAAAATTATAAACTTTTAGATCAAAAAACAGCACCaaca > 1:970179/1‑138 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAATAAGACATTGATACACTTTTAGATCAAGATACAGCAGCaagaa > 2:2198324/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGTGGAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAATTCTCAAAGAAGACATTTATAAAGTGTTCGATCAAGATCCAGCAGCaagaa > 2:3504206/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGGTAAGATGAAAACAAATAAATAAGTGGGGGGACGCAGGTTTTTTTTATTATGGTAAAAAAAGACATTTATAAACGTTTAGATAAAAATACAGCACCaaaaa > 1:1780340/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGTAATCAAATAGAGAAGGGGGGGGCAGCAGGTGTTTTTTAGAATTCTCCAAGTAGACATTGGTTCAGTGTTGGGGCAAGTTCCAGCAGCcagac > 2:5542908/1‑139 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaa > 2:2838722/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGGGAAGAGGAAATCAAATAGAGAAGTGTGGGGAATCATGTGTTTTTTTGTATGCGCAAATAAGACATTGATCCATTGGTCGTTAAAGATCCAGCCGCaagaa > 1:2735574/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTTTTTGGGGTATAGGTAATCAAATAAATAAGTGGGGGGGAGCAAGTGTTTTTTTTAAATGTCAAATTAAACCTTTATACAGTGTTAGATCAAAATCCAGCAGCaaaaa > 1:647239/1‑140 (MQ=255) ctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaag < 1:1401771/140‑1 (MQ=255) ctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGGGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaag < 1:2848451/140‑1 (MQ=255) ctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAAACCAATAGAGAAGTGGGGGGAAGCATGTCTTTTTTAGACTTCTCAAAGAAGACATTGATACAGTGTTGGATCAAGATCCAGCAGCaagaag < 1:3195905/140‑1 (MQ=255) ttttCATGCAGAGGCGC‑TTTTTTTATTGGGTGTAGAGGAAAAAAAAAATAGTAGTGGGGGGGAGCATGTGTTTTTTTGAATTCTCAAAGAAAAAAATTATAAAGTGTTAGATAAAGATACACCCGCAAGAAGTTAttttt > 1:2988601/1‑139 (MQ=255) ttttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga > 2:341610/1‑93 (MQ=255) ttttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTTATACAGTGTTCGATAAAGATCCAGCAGCAAGAAGGTAttttt > 2:3975031/1‑139 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 1:3940279/140‑1 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 2:483153/140‑1 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 1:3369391/140‑1 (MQ=255) cAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGAtt < 1:359824/140‑1 (MQ=255) cAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGAtt < 1:4555497/140‑1 (MQ=255) gagGCGC‑TTTTTTTATTGGGTGAATAGGAAATAAAAAAGAGGAGTGGGGGGGAGCATGTGTTTTTTAGTATTCTAAAAAAAGACCTTGATACAGTGTTAGATCAAGATCCACCAGCAAGAAATTATTTTGTAGTGAtttt > 2:83963/1‑140 (MQ=255) agGCGC‑TTTTTTTATTGGGGGTAGAGGGAATAAAATAGAGAAGTGGGGGGCAGCATTTGTTTTTTATAAAGCGCAAAGAAGAAAATGATAAAATGTTAGATAAATATACAGCACCAAAAAGTTAGTTTTAAGTGATTTTa > 2:738481/1‑140 (MQ=255) c‑TTTTTTTATTGGGTGAAGAGGAAATAAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAAAGCTCAAAGAAGAAAATTATAAAGTGTTAGATAAAGATACATCAGCAAGAAGTTATTTTTAAGTTATTTTAAATTa > 2:5399411/1‑140 (MQ=255) c‑TTTGTTTATTGGGTGAAGAGGCACTCAAATAGGGAAATGGGGGGAAGCATGTGTTTTTTAGAATGGTCAAACAAGACAATGAAACACAGTTCCGTCCACATCCCGCCGCAAGAACTTATTTTTGAGTGATTTTAACTTa > 2:458266/1‑140 (MQ=255) tattttATTGGCTGAAGACGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTAtt < 2:905039/138‑1 (MQ=255) tttttATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTc < 1:3455160/140‑1 (MQ=255) tttttATGGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTc < 2:1632617/140‑1 (MQ=255) ttttATTGGGTGCCGAGCAAATCAAATAGAGAAGTGGGGGGAACCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTcc < 1:4959547/140‑1 (MQ=255) ttttATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTcc < 2:3073563/140‑1 (MQ=255) tGGGTGAAGAGGAAATCACATAGAGACGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 1:2018657/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGACGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:5640091/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 1:425662/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 1:3543847/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 1:738481/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:1176154/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:3858967/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:3666599/140‑1 (MQ=255) tGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:1888194/140‑1 (MQ=255) ggTGAGGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGACGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTGAACTTATTCCGGTTTACa < 1:433267/140‑1 (MQ=255) ggTGAAGAGTAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:150438/140‑1 (MQ=255) ggTGAAGAGGAAATCACATAGAGAAGTTGGGGGAAGCATGTGTTTTTTAGAATGCTCAAATAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 1:582186/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGCAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:611134/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 1:2141159/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:4099019/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:1730979/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:326925/140‑1 (MQ=255) ggTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 2:2125360/140‑1 (MQ=255) ggTGAAGACGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACa < 1:3797478/140‑1 (MQ=255) gAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACATGc < 1:5748101/140‑1 (MQ=255) | TCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGAGGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTACATGC > NZ_CP034943/112455‑112729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |