| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,498,677 | G→T | 5.1% | intergenic (‑172/‑95) | manA ← / → EO946_RS18005 | mannose‑6‑phosphate isomerase, class I/spore germination protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,498,677 | 0 | G | T | 5.1% | 820.6 / 5.8 | 298 | intergenic (‑172/‑95) | manA/EO946_RS18005 | mannose‑6‑phosphate isomerase, class I/spore germination protein |
| Reads supporting (aligned to +/- strand): ref base G (155/117); new base T (2/23); total (158/140) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.18e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 309 total aligned reads displayed.
TTATTTTCCCGGTGCGCTCCCCTTACAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGCACAATATAGAAACATTG > NZ_CP034943/3498539‑3498813 | tCCCGGTGCGCTCCCCTTACAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGgtttgttt < 1:2100962/140‑1 (MQ=255) gTGCGCTCCCCTTACAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTGTGTTTCAGcg > 1:4045602/1‑139 (MQ=255) tGCGCTCCCCTTACAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCt < 1:1523817/140‑1 (MQ=255) cgcTCCCCTTACAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCttt < 2:3091577/140‑1 (MQ=255) tCCCCTTACAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTcc < 1:4791963/140‑1 (MQ=255) tCCCCTTACAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTcc < 1:1737099/140‑1 (MQ=255) ttACAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATg < 1:4565237/140‑1 (MQ=255) ttACAAACGCCGGATAAGCTGTCTTTGTCCTATGACAACATATGTACAAAGCATTATGAATCAATGACCCCTTTTGAGAACACGCTTCCTTTTTATTATAGCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATg < 1:3565909/140‑1 (MQ=255) gtACAAACGCCGGATAAGCTGTCTTTGTCCTATGACAACATATGTACAAAGCATTAGGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATg < 1:3877977/139‑1 (MQ=255) aCAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATgaa < 2:1966396/140‑1 (MQ=255) cAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATgaag < 1:1178574/140‑1 (MQ=255) cAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATgaag < 1:538476/140‑1 (MQ=255) cAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATgaag < 1:3067328/140‑1 (MQ=255) cGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGaata > 2:4308320/1‑140 (MQ=255) tAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTcc < 2:1089438/140‑1 (MQ=255) gTCTTTTTCCTATGACAACATATGTACCAAGCATTATGTATCCTTGACCCCTTTTGAGAAAACGCTTCCTTTTTATTAGATCACTTTCAATAGTAGGTTTGTTTGAGCCTTGTCCTGATGAAGAATAATTCTCCtttgtt > 1:2372896/1‑140 (MQ=255) gTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCtttttt > 1:5567633/1‑140 (MQ=255) gTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCGTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCtttttt > 1:5308200/1‑140 (MQ=255) gTCTTTGTCCTATGACAACATAGGTACAAAGCATTATGTATCAATGACACCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTGTCAATAGAAGGTTTGTTTCATCCTTTTCCTTATGACGAATAATTCTCCtgtttt > 1:5535368/1‑140 (MQ=255) cTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGa > 1:2755583/1‑140 (MQ=255) ttttCCTATGACAACATATGTACAAATCATTATGTATAAATGACACATTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATa < 2:2972807/140‑1 (MQ=255) aTGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAAtt < 2:285106/139‑1 (MQ=255) aTGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAAtt > 1:285106/1‑139 (MQ=255) aTGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTa > 2:2913611/1‑140 (MQ=255) atatGTACAAAGCATTATGTATCAATGAACCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAAc < 2:1449991/140‑1 (MQ=255) tACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCa > 1:5124722/1‑140 (MQ=255) tACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTGTTTAATATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAGTAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCa > 1:5083644/1‑140 (MQ=255) cAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAAt > 1:1953496/1‑140 (MQ=255) cAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAAt < 2:4123056/140‑1 (MQ=255) cAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAAt < 2:4879334/140‑1 (MQ=255) cAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGCTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAAt > 2:952137/1‑140 (MQ=255) cAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTATTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAAt < 2:1728110/140‑1 (MQ=255) cAAAGCATTATGTATCAATCACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAAt < 2:5541229/140‑1 (MQ=255) aaGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCt > 1:2629326/1‑140 (MQ=255) aGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGACGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTg > 2:3008561/1‑140 (MQ=255) aGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGTTACAAATTAAGAAAAACCGTCAATCTg > 1:1862540/1‑140 (MQ=255) aGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAATACCGTCAATCTg > 1:2490973/1‑140 (MQ=255) aGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTg > 1:2203648/1‑140 (MQ=255) aGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTg > 2:2490686/1‑140 (MQ=255) aGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTg > 1:673985/1‑140 (MQ=255) aGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTg > 1:695417/1‑140 (MQ=255) aGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTg > 1:929228/1‑140 (MQ=255) tATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAATAAAAAACGTAAATCTGTTTta > 2:3971906/1‑140 (MQ=255) tATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTta > 2:5310318/1‑140 (MQ=255) tATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTta > 2:509191/1‑140 (MQ=255) tATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTta > 2:2125797/1‑140 (MQ=255) tATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTta > 2:1306650/1‑140 (MQ=255) tATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTATCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTta > 2:1537385/1‑140 (MQ=255) tATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCATTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTta > 2:4589980/1‑140 (MQ=255) aTGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTtat < 2:1113/140‑1 (MQ=255) aTCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAg < 1:3019173/140‑1 (MQ=255) aTCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAg > 2:3397884/1‑140 (MQ=255) aTCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAg < 1:3110385/140‑1 (MQ=255) aTCAATGACCACTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAg < 1:1062188/140‑1 (MQ=255) cAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGTAGGTTTGTTTCAGCCTTTGCCTTATGAAGAATAATTCTCCTTTTTTGATACAATTTTAGAAAAACCGTCAATCTGTTGTATAAAggg > 2:3720906/1‑140 (MQ=255) cAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAggg > 2:3681131/1‑140 (MQ=255) cAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAggg > 2:5712176/1‑140 (MQ=255) cAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAggg > 1:4388275/1‑140 (MQ=255) cAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAggg > 1:1319755/1‑140 (MQ=255) cAATGACCCCTTTTGAGAAAACGCTTCCTTGTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATTAACAATAATTCTCCTTTATTGATACCAATTAAGAAAAACCGTCAATCTGTTTTATAAAggg > 2:1410198/1‑140 (MQ=255) aTGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAAACGTCAATCTGTTTTATAAAGGGga > 2:329848/1‑140 (MQ=255) tGACCCCTTTTGAGAAAACGCGTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGgag < 2:35329/140‑1 (MQ=255) aCCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGgagag > 2:22589/1‑140 (MQ=255) aCCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGAAAAAATGTTTTATAAAGGGgagat > 2:1659179/1‑139 (MQ=255) aCCCCTTTTGAGAAAACGCTACCTTTTTATTATATCACTTTCAATAGAATGTTTGTTTCAGCCTTTTCCTTATGAATAATAATTATACTATTTTGATAAAAATTAAGAAAAACCCTCAATATGTATTATAAAGGGcagag > 2:3246602/1‑140 (MQ=255) cccTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGaa > 2:4686736/1‑140 (MQ=255) cccTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGaa > 2:924286/1‑140 (MQ=255) cccTTTTGAGAAAACGCTTCCTTTGTATTATAGCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTGATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTGTATAAATGGCAGAGaa > 1:5670794/1‑140 (MQ=255) ttagaAAACGCTTACATTTTATTATATCACTTTCAATAGAAGGTTTGTTTAAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATg < 2:2027616/138‑1 (MQ=255) aaCGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATc > 1:3200461/1‑140 (MQ=255) aaCGCTTCCTTTTTATTATATCACTTTAAATAGAAGGTTTGTTTCAGCATTTTCCTTATGAATAATAATTCTCATTTTTTGATAAAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATc < 2:2731430/140‑1 (MQ=255) ccTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTg < 2:3200461/140‑1 (MQ=255) tttATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGAtct > 1:839841/1‑140 (MQ=255) ttattaTATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGAtctc < 1:1532664/140‑1 (MQ=255) ttattaTATCACTTTCAATACAAGGTTTGTTTCAGCATTTTCCTTATGAATAATAATTCTCCTTTTTTGATAAAAATTAACAAAAACCGTCAATCTTTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGAtctc < 1:409876/140‑1 (MQ=255) ttattaTATCACTTACAATAGAAGGTTTGTTTCAGCCTTTTCCTTATTAACAATAATTCTCCTTTTTTGATAAAAATTAACAAAAACCGTCAATCTTTTTTATAATGGGGAGAGAAACTATGCAAATCGACTCTGAtctc < 1:647118/140‑1 (MQ=255) ttattaTATCAATTTCAATCGAAGGTTTGTTTCAGCTTTTTCCTTATCAAGAATAATTCACCTTTTTTTATAAAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGTGAGAAACTATGAAAATCGACTCTGAtctc < 1:633472/140‑1 (MQ=255) ttattaTAGACCTTTCAAGAGAAGGTTTTTTTCAGCCTTGTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAACGGGGAGAGAAACTATGAAAATCGACTCTGAtctc < 2:5355997/140‑1 (MQ=255) ttatATCACTTTCAATAGATGTTTTGTTTCAGCCTTTTCGTTATGAATAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTAAATCTGTTTTATAAAGGGGAGAGAAACTAGGCAAATCGACTCTGATCTCCAg < 2:2438057/140‑1 (MQ=255) ttatATCAATTTCATTAGAAGGTTTGTTTCAGACTTTTCATTATGAAGAATAATTCTCGTTTTTTGATACAAATTATGAAAAACCGTCAATCTGTTTTATAAAGGGGAGTGAAACTATGCAAATCGACTCTGATCTCCAg < 2:4342432/140‑1 (MQ=255) ttataACTTTAAATATAATGTTTTTTTCAGCCTTTTCCTTATTAATATTATTGGTCCTTTTTTTATACAATTTAATAAAAGGCTTCAATCTGTTTTATAAAGGGGAGAGAAAATATGCAAATCGACTCTGATCTCCAGca < 2:4977197/139‑1 (MQ=255) ttatCACTTTCAATAGCAGGTTTTTTGCCGCCTTTTCCTTAGGAACAATAAGCCGCCTTTTTACAAACAAATAAAGAAAACCCGTAAATCGGTTTTATAACGGGGATAGAACCTATGCAAATCGACTCTGATCTCCAGca < 1:3798475/139‑1 (MQ=255) ttatCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATTAAGAATAATTCTCCTTTTTTTATACAAATTAAGAAAAACCGTCAAACTGTTTTATAAAGGGGAGATAAACTATGCAAATCGACTCTGATCTCCAGca < 2:846843/139‑1 (MQ=255) atatCCCTTTCAATCGAAGGTTTGTTTCAGCCCTTTCCTAATGAAGAATCATACTCCTCTTGGCATAACAATTAACAAAAACCGTAAAGCTGTTTTAAAACGGGTAGAGAAAAGATGCAAATCGACTCTGATCTCCAGca < 1:2913611/140‑1 (MQ=255) atatCATTTTAAATAGAAGGTTTGTTTCAGCCTTTTCCTTATCAAGAATAATTCTCCTTTTTTGATAAAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGca < 2:4388275/140‑1 (MQ=255) atatCACTTTCAATAGAATGTTTTTTTCAGCGTTTTCCTTATGAACAATAATTATCATTTTTTGATACAAATTAAGAAAAACCGTCAATCTTTTTTATAAAGGGTAGAGAAACTATGCAAATCGACTCTGATCTCCAGca < 2:1005416/140‑1 (MQ=255) atatCACTTTCAATAGAAGTTTTGTTACAGCCTTTTCCTTATTAAGAATAATACTCCTTTTTGGATACAAATTAACAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGca < 2:2372896/140‑1 (MQ=255) atatCACTTGAATTATAAGGTTTGTTTCAGCCTTTTCATTATGAACAATAATTCTCATTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGca < 2:5060137/140‑1 (MQ=255) atatCAATTTCAATAGAAGTTTTTTTTATGCCTTTTCCTTATTAATAATAATTATCCTTTTTTGATACAAATTAATAAAAACCTTAAATCTTTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGca < 1:2867560/140‑1 (MQ=255) atatCAATTTCAATAGAAGTTTTGTTTCAGCCTTTTCCTTATTAAGAATAATTCTCCTTTTTTGATAAAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGATAAACTATGAAAATCGACTCTGATCTCCAGca < 1:1611121/140‑1 (MQ=255) atatCAATTTAAATAGAAGTTTTTTTTCAGACTTTTCATTATGAATAATAATTCTCCTTTTTTGATAAAAATTAAGAAAAACCGTCAATCTTTTTTATAATGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGca < 2:5765681/140‑1 (MQ=255) atatAATTTTAAATAGAAGGTTTGTTTCAGCATTTTCCTTATTAATAATATTTCTCTTTTTTTTATAAAATTTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGATAAACTATGCAAATCGACTCTGATCTCCAGca < 2:452507/140‑1 (MQ=255) atacCACTTTCAAGAGAAGGTTTTTTTCAGCCTTTACCTTATTAAGAATAATTCTCATTTTTTGATAAAAATTAAGAAAAACCGTCAATCTTTTTTATAAAGGGGAGAGAACCTATGCAAATCGACTCTGATCTCCAGca < 2:1867194/140‑1 (MQ=255) tatCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATATTTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGcac < 2:2475411/140‑1 (MQ=255) tatCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTCATACAAATTAAGAAAAACCGTCAATCTTTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGcac < 1:5712603/140‑1 (MQ=255) tatCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCATTTTTTGATACAATTTAAGAAAAACCGTCAATCTTTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGcac < 1:4308320/140‑1 (MQ=255) tatCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTACTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGcac > 1:3281994/1‑140 (MQ=255) ttCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGAAAATCGACTCTGATCTCCAGCACAATATAg > 2:546691/1‑140 (MQ=255) aaGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGCACAATATAGAAACATTg > 1:3755873/1‑140 (MQ=255) aaGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGCACAATATAGAAACATTg > 2:4725367/1‑140 (MQ=255) | TTATTTTCCCGGTGCGCTCCCCTTACAAACGCCGGATAAGCTGTCTTTTTCCTATGACAACATATGTACAAAGCATTATGTATCAATGACCCCTTTTGAGAAAACGCTTCCTTTTTATTATATCACTTTCAATAGAAGGTTTGTTTCAGCCTTTTCCTTATGAAGAATAATTCTCCTTTTTTGATACAAATTAAGAAAAACCGTCAATCTGTTTTATAAAGGGGAGAGAAACTATGCAAATCGACTCTGATCTCCAGCACAATATAGAAACATTG > NZ_CP034943/3498539‑3498813 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |