| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,562,015 | A→C | 12.7% | intergenic (‑661/‑137) | EO946_RS18300 ← / → EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,562,015 | 0 | A | C | 12.7% | 610.9 / 3.9 | 282 | intergenic (‑661/‑137) | EO946_RS18300/EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base A (141/86); new base C (3/48); total (145/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.67e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 289 total aligned reads displayed.
GGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATC > NZ_CP034943/3561876‑3562151 | gggATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACaa < 1:4628748/140‑1 (MQ=255) gCAAGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGAc < 1:1892425/140‑1 (MQ=255) cACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATATCGCAAAACAGACCATATAAGAGCTTTTTTAAGCTTCACAAGGGTGACa > 1:3680771/1‑140 (MQ=255) aCGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACaa < 1:5477114/140‑1 (MQ=255) gtcgtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATg < 2:1648930/140‑1 (MQ=255) cgtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAATGGTGACAATGaa > 2:1472349/1‑140 (MQ=255) aCAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGAACATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTa < 2:1335215/140‑1 (MQ=255) cAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTAc < 2:3524428/140‑1 (MQ=255) cAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTAc < 2:5599086/140‑1 (MQ=255) aGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACa > 2:3239527/1‑140 (MQ=255) cAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTAGTGGTACAAttt > 1:1242331/1‑140 (MQ=255) cGCATCTATTTTAATGGCCCATGAATAGGACACAGCGGAAGCCCTTCAAATAACCCTGCTTTTATAGCGCAAAACAGACCATATACGCGCTGTTTTACGCTTCACAAGGGTGCCAATGCACTTGTGGTACAATTTTCaaa > 2:4396678/1‑140 (MQ=255) cGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCaaa > 2:5033114/1‑140 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACtt > 2:1607731/1‑140 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACtt > 1:262769/1‑140 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTGTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACtt > 2:4712268/1‑140 (MQ=255) cTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCg > 1:3797564/1‑140 (MQ=255) ttttAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGaa > 2:819199/1‑140 (MQ=255) ttttAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGaa > 2:1056691/1‑140 (MQ=255) aTGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACg < 2:178735/140‑1 (MQ=255) tGGCCAATTAATAGGACAACGCGGAACCCCTTCAAATAACCCTGTTTTTATCGCGCAAACCACACCATATACGCGGTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGc < 2:2229458/140‑1 (MQ=255) tGGACAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACAATATCCGAGCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGc < 2:762885/140‑1 (MQ=255) aTTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTAGGAAAATCGACGGGGt > 1:4084179/1‑140 (MQ=255) aTAGCACAAAGCGCAACCCCTTCAAAAAAACCTGATTTTATAGCCCAAACCACACCATAAACGAGCTTTTTTACGCTACACACGGGGCACAAGCAACTGGGGGTACAATTTTCAAACTACGGAAAAACGCCGGGGTgggg < 1:4418325/140‑1 (MQ=255) aGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTGTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGaa > 1:3888267/1‑140 (MQ=255) ggACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAAt > 1:1491112/1‑140 (MQ=255) aaaGCGGAAGCTCTTAAAATAAACTTTATTTTTTACGGCAAACCAGACCATTTACGCCGTTTTTTACGCTTCACAAGGGTTACAATGAAATTGTGGTACAATTTTCAAAGTTCGGAAAAACGCCGGGGTGGGGAATCGCa < 2:4663323/140‑1 (MQ=255) aaaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGTAATCGCa > 1:1588438/1‑140 (MQ=255) aaaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa > 1:4765669/1‑140 (MQ=255) aaaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa > 2:4525947/1‑140 (MQ=255) aaaGCGCAAGCCCTTAAAATAAACCTGTTTTTATCGCCAAAACCCCACCATAAACGAGCTTTTTTACGCTTCACACGGGTCAAAATGAACTTGTGGTAAAATTTTCAAACTGCGCAAAAACGCCGGGGTGGGGAATCGCa < 1:451327/140‑1 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGACACACGCCGGGGTGGGGAATCGCaaa > 1:1768136/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 2:1526320/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGTCAATGAACTTGTGGTACAATTTTCAAACTTCGGAAACACGCCGGGGTGCGGACTCGCAAAGCCGa > 1:5549306/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGa > 1:995504/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGa > 1:2849549/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAAATTGTGGTACAATTTTCAAAATACGGAAAAACGCCGCGGTGGGCAATCGCAAAGCCGa > 2:3901913/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTGTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCgt > 1:5000830/1‑139 (MQ=255) agacacacAAATAAACCTGATTTTATACCCAAAAACACACCATATACGAGATTTTTTACGCTACACACGGGTGAAAATGAACTTGTGGTAAAATTTACAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 1:5384285/133‑1 (MQ=255) aGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATCCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTGCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 2:4621875/140‑1 (MQ=255) aGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATCCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTAAAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 2:116493/140‑1 (MQ=255) aGCCATTCAAATAAACATGATTTTATAGCGCAAAACCCACCATATCCGAGCTTTTTTACGAGTCACAAGGGTGACAATGAACTTGTTGTACAATTTTCAAACTTCGGAAAAACCCCGGGTTGGGGAATCGCAAAGCCGAt < 2:318108/140‑1 (MQ=255) cTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACt > 1:181034/1‑140 (MQ=255) tCAAATAACCCTGCTTTTCTAGCGCAAACCAGACCAGATCGGAGCTTTTTGACGCTTCCCAAGGGTTACACTGAACGTGGGGTCCAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt < 2:5344261/140‑1 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 1:1334170/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 1:3058510/1‑140 (MQ=255) ccAACTAAACCGCATTTTATAGCGCAAACCCGACCATATCCGAGCTTTTTTACGCTTCACACGGGTCACAAAGACCTTGTGGTACAATTTTCAACCTCCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt < 2:4823430/139‑1 (MQ=255) aaaTAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGGGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTg < 2:1193519/140‑1 (MQ=255) tAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 2:2622314/140‑1 (MQ=255) tAAACCTGATTTTATAGCGCAAAACAGACAATATACGACCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAATCCGATTACTTTTGGaa < 2:3061435/140‑1 (MQ=255) tAAACCTGATTTTATAGCGCAAAACACCCCATATACGCGCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 2:5185480/140‑1 (MQ=255) aaaaCCTTATTTTATCGCGAAAAACACACCATATACTAGCTTTTTTACGCTACACACGGGTGACAATGAAGTTGTGGTACAATTTTCAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 1:5060878/139‑1 (MQ=255) acccTGTTTTTATCGCCCAAACCCCACCATATACTAGCTTTTTTACGCTACACACGGGTGACAATCACCTTGTGGTACATTTTAAAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:3844415/138‑1 (MQ=255) aactttaTTTTATAGCCCAAAACACACCATATCCGCGTTTTTTTACGCTACACACGGGTGACAATGAACTTTTTTTACAATTTTCAACGTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:4693100/134‑1 (MQ=255) aaCCTTATTTTATCGCGCAAAACACACCATATCCGAGTTTTTTTACGCTACACACGGGGGAAAATCAAGTTGTGGAACATTTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:5252804/140‑1 (MQ=255) aaCCTTATTTTATAGCGAAAAACACCCCATATACGAGCTTTTTTCCGCTACCCACGGGTGACAATCAAGTTGTGGTACAATTTACAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:3345236/140‑1 (MQ=255) aaCCTTATTTTATAGCACAAAACACACCATATCCTAGCTTTTTTCCGCTACACACGGGTGACAATGACGTGGTGGTACAATTTAAAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:4801347/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAACACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:5506293/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAACCCCACCCTATCCGAGATTTTTTACGCTAAACACGGGTGAAAATGAACTTTTGGTACAATTTACAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:2173263/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACCGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:3752828/140‑1 (MQ=255) aaCCTGATTTTATAGCGAAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATTAATTTGTGGTACAATTTAAAAACTACGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1056691/140‑1 (MQ=255) aaCCTGATTTTATAGCGAAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:2580903/140‑1 (MQ=255) tttttttATAGCCCAAAACACACAATATACGCGATTTTTTCCGCTTCACACGGGTCACAATGAACTTGTGGTACAATTTTCAACCTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAgg < 1:2308389/137‑1 (MQ=255) ttaTTTTATAGCGCAAAACAGACAATATACGATCTTTTTTACTCTTAACAAGGGTGACAATGAAATTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAgg < 2:188162/138‑1 (MQ=255) tGATTTTATACCGCAAAACAGACAATAACCGCGGTTTTTCACGCTTCACACGGGTGACAATGAACGTGTTGTACAATTTCCAAACGGGGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAgg < 1:851348/140‑1 (MQ=255) gATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGATTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGa < 2:2016053/140‑1 (MQ=255) tttttATCGCCAAAACCAGACCATAAACGCGATTTTTTCCGATTCACACGGGTTAAAATGAACTTGTGTTACAATTTGCAAACTGCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:2912873/139‑1 (MQ=255) aTTTTATCGCGCAAAACACACCATATACGAGCTTTTTTACGATTCACAAGGGTGACAATGAACTTGTGGTAAAATTTTCAAACTTCGGAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:4387432/140‑1 (MQ=255) aTTTTATAGCGCAAACCACACCATCTACCCGCTTTTTTAGGGTTCACACGGGTGACAATCAACTGGGGTTACATTTTTCAAACTTCGCAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:1694940/140‑1 (MQ=255) aTTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 2:3638204/140‑1 (MQ=255) tttATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATTAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:568485/140‑1 (MQ=255) ataGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACat > 2:3016085/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGACTCGCAAAGCCGCTTACTTTTGGAAGGCAGGATAAAATATTGCGAGAGAACa > 1:4137157/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGACCa > 2:3861168/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 1:1090745/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 1:1938087/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 1:4018276/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 1:5324120/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATCAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCTAGAGAACa > 1:4230868/1‑140 (MQ=255) ataCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa > 1:597963/1‑112 (MQ=255) ataCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAAtt > 1:2498770/1‑140 (MQ=255) ataCGAGCTTTTTTAAGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAAtt > 1:2055438/1‑140 (MQ=255) aCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTGAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa > 1:3538781/1‑87 (MQ=255) aGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCtt > 1:1148203/1‑140 (MQ=255) aGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCtt > 1:2234746/1‑140 (MQ=255) aGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCtt > 1:2601194/1‑140 (MQ=255) aGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCtt > 1:606644/1‑140 (MQ=255) cTTTTTTACGCTTCACAAGGGTGACAATGAAGGTGTGGTACAATTTTCAAACTTCGGAAAATCGCAGGGGGGGGGAATCTCAAAGCCGATTACTGTTGGAACGCAGGATAACATCTTGCGAGAGAACAAGCTGTCCttgc > 2:2476522/1‑138 (MQ=255) cTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTc > 1:117741/1‑140 (MQ=255) cTTGTTTACGCTTCACCAGGGTGACAATGAACTTGTGGTAGAATTTTCAAACTTCGGAAAAACGGCGGGGTGGGGAATCGCAAAGCCGATTACGTTTGGAACTCAGCATAACATATTGCGAGAGAACAACATTTCGTTTc > 1:2368528/1‑140 (MQ=255) tttttACGCTTCACAAGGGTGACATTGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCtt < 2:2788794/140‑1 (MQ=255) tttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCtt > 2:486353/1‑140 (MQ=255) ttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa > 2:4241689/1‑102 (MQ=255) tttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTaa < 2:1984644/140‑1 (MQ=255) tttACGATTCACAAGGTTGACAATTAAGTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTaa < 2:3403115/140‑1 (MQ=255) aCGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGa < 2:3806315/140‑1 (MQ=255) ttCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGAtt > 2:5441135/1‑138 (MQ=255) cacaAGTGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGTCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAAt < 2:5052380/140‑1 (MQ=255) cacaAGGGTTACAATCAACTGGTGGTAAAATTTTCAAATTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAAt < 2:4084179/140‑1 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAAt > 1:4877286/1‑140 (MQ=255) | GGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATC > NZ_CP034943/3561876‑3562151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |