| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,996,857 | C→A | 5.9% | intergenic (‑163/+43) | purA ← / ← EO946_RS20530 | adenylosuccinate synthase/VOC family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,996,857 | 0 | C | A | 5.9% | 739.0 / 2.9 | 291 | intergenic (‑163/+43) | purA/EO946_RS20530 | adenylosuccinate synthase/VOC family protein |
| Reads supporting (aligned to +/- strand): ref base C (126/135); new base A (2/26); total (128/163) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.17e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 311 total aligned reads displayed.
TCAAAACGATTCTATTCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCTCCAGTACGGGTTCT > NZ_CP034943/3996718‑3996994 | tCAAAACGATTCTATTCAAACAAATCAAGTTTATCAGTGAAGACACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCAGTCGTTTTACAAGCGTTTTCTCATCGCATTGTcc > 1:5662794/1‑140 (MQ=255)tCAAAACGATTCTATTCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAATCGTTTTCTCATCGCATTGTcc > 1:545286/1‑140 (MQ=255)tCAAAACGATTCTATTCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAATCGTTTTCTCATCGCATTGTcc > 1:5536167/1‑140 (MQ=255)tCAAAACGATTCTATTCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTcc > 1:322536/1‑140 (MQ=255)tCAAAACGATTCTATTCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTcc > 2:1915099/1‑140 (MQ=255)tCAAAACGATTCTATTCAAACAAATCAACTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTcc > 2:3344715/1‑140 (MQ=255) gATTCTATTCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTaaaaat > 1:3769385/1‑139 (MQ=255) ttCTATTCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAATGCt > 2:2883684/1‑140 (MQ=255) ttCAAACAAATCAAGTTTATCAGTGAAGAAACAGACAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGa < 1:1316209/140‑1 (MQ=255) ttCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGa < 2:812854/140‑1 (MQ=255) ttCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGa < 2:1142437/140‑1 (MQ=255) ttCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGa < 1:3625008/140‑1 (MQ=255) acaaaTCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCACTATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCACCGCATTGTCCTAAAAAGCTCGTGAAACtt < 2:1859693/140‑1 (MQ=255) acaaaTCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACtt > 1:2764330/1‑140 (MQ=255) acaaaTCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGATCGTGAAACtt > 2:4636112/1‑140 (MQ=255) acaaaTCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTACATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACtt < 2:299565/140‑1 (MQ=255) aaaTCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACtttt < 2:4758117/140‑1 (MQ=255) aaTCAAGTTTATCAGTTAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTa < 2:1201400/140‑1 (MQ=255) aaTCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTa < 2:3893818/140‑1 (MQ=255) aaTCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTa < 2:3458855/140‑1 (MQ=255) aTCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTAt > 2:5176/1‑140 (MQ=255) tCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATc > 2:1947949/1‑140 (MQ=255) tCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATc > 1:3086089/1‑140 (MQ=255) tCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAAGCAATATTCGTTCGCTTCCATTCGGTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATc > 2:3480645/1‑140 (MQ=255) tATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGc > 2:2547113/1‑140 (MQ=255) tATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGc < 1:1628819/140‑1 (MQ=255) tCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGTAc > 2:1398532/1‑140 (MQ=255) tGAAGAAACATAAAGTCACTTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGaaa < 1:664551/140‑1 (MQ=255) tGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGaaa < 1:1952320/140‑1 (MQ=255) tGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGaaa < 1:4119547/140‑1 (MQ=255) aagaaACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGaaaaa > 1:3401921/1‑140 (MQ=255) aagaaACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGaaaaa > 1:2655338/1‑140 (MQ=255) aagaaACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGAGTTTTATCATCGCATTGTGCTAAAAAGCTATTGAAACTTTTATCCTTAAGCACGaaaaa > 1:4923963/1‑140 (MQ=255) gAAACTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGGTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACt < 1:5271386/140‑1 (MQ=255) aaGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTg < 1:3832010/140‑1 (MQ=255) aaTTTTAAATCCGAACATTAAATTAATGTACCTCAATATTCGTTCGCGTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGa < 1:1108300/140‑1 (MQ=255) tGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGatat < 2:5464934/140‑1 (MQ=255) tGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGatat < 2:3857142/140‑1 (MQ=255) tGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGatat < 2:361389/140‑1 (MQ=255) tGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGatat < 2:3139900/140‑1 (MQ=255) gTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATc > 2:1430884/1‑140 (MQ=255) aTCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCtt < 2:272499/105‑1 (MQ=255) gAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTTATATAACTTTTGt > 1:1220775/1‑140 (MQ=255) gAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGt > 1:4704968/1‑140 (MQ=255) aaCATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTa > 1:2338492/1‑140 (MQ=255) aaCATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTGTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTa > 1:228351/1‑140 (MQ=255) aTGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATCTCCCTTTTGTATTCATAAAAACg > 2:1685970/1‑140 (MQ=255) tGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGa < 1:4676159/74‑1 (MQ=255) tGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCTCGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGa > 1:1011440/1‑140 (MQ=255) tGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGa > 1:5100719/1‑140 (MQ=255) tGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGa > 1:5365468/1‑140 (MQ=255) tGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGa > 1:4418414/1‑140 (MQ=255) tGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGa > 1:4358720/1‑140 (MQ=255) tGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGa > 1:2707803/1‑140 (MQ=255) aaTATTCGTTCGCTTCCATTCTTTTTAAAAGCGTTTTCTCATCGCTTTGTCCTAAAAAGCTCGTTAAACTTTTATCCTTTAGCACGAAAAAGAGTAACTTGCCTGATATCCCTTTTGTTTTAATAAAAACGACTCGCCaa < 2:2610395/140‑1 (MQ=255) aaTATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCaa > 1:2173116/1‑140 (MQ=255) atatTCGGTCGCTCCCATTCGTTTAACATGCTTTTTCACATCCATTTGTCATAAAAAGATCTTTAAAATTTTAACCTTTCGCACTAAAACGAGTTAGTTGCCTCATATCCCTTTTGTATTCATAAAAACGACTCGCCAAc < 2:4541503/140‑1 (MQ=255) tatTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACTACTCGCCAAcc > 2:2219464/1‑140 (MQ=255) tggttcgCTTCCTTTGGTTTTAAAAGCGTTTTATCATCGCTTTGTCCTAAAAAGCTCGTTAAACTTTTATCCTTTAGCACGAAAAAGTGTTAGTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTc < 2:1838058/138‑1 (MQ=255) tctttcgGTTCCATTCTTTTTACAAGCGTTTTCTCATCGCTTTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACTAAAAAGAGTTACTTGCCTGATAGCCCTTTTGTATTAAAAAAAACGACTCGCCAACCGTc < 2:4704968/137‑1 (MQ=255) ttcgTTTACATTCGTTTTAAACGGTTTTTCTAATCGAATTGTCCTAAAAAGCCCGTGAAACTTTTATCCTTTCGCACTAAAAAGATTTACTTGCCTGATATCCCTTTTTTATTCATAAAAACGACTCGCCAACCGTCCgg < 2:5451441/140‑1 (MQ=255) ttcgCTTCCTTTCTTTTTAAAACCTTTTTCTCATCGAATTTGCATAAAACGCTCGTCAAAGTTTATTCCTTTAGCCCGAAAAAGAGTTACGTCCCTGATATCCCTTTTTTTTTCAAAACAACGACTCGCCAACCGTCCgg < 2:43726/140‑1 (MQ=255) ttcgCTTCAATTCTTTTTACATGGTTTTTATCATCGATTTGTCCTAAAAAGCTCGTGAAAATTTTACCCTTTAGCATTAAAAATAGTTATTTGCCTTATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCgg < 2:1033124/140‑1 (MQ=255) ttcgCTCCCATTCTTTTTACAAGCGTTTTCTCATCGCTTTGTCCTAAAAAGCTCGTGAAATTTTTATCCTTTAGCACGAAAAAGAGTTAGTTGCCTTATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCgg < 2:2460272/140‑1 (MQ=255) ttcgATTCCATTCGTTTTACACGGGTTTTCTCATCGCATTGTCCTAAAAAGCTGGTTAAATTTTTATCATTTAGCACGAAAAAGATTTACTTGCCTGATATCCGTTTTTTATTCATAAAAACGACTCGCCAACCGTCCgg < 2:3024207/140‑1 (MQ=255) tcgGTTCCTTTGTTTTTACATGCGTTTTCACATCGTATTTCCAAAAAAAGCTCTTCAAAGTTTTATCATTTCCCACTAAAAAGTTTTATTTGCCTGATTTCCCTTTTGTTTAAATAAACACGACTCGCCAACCGTCCGGa < 1:5704100/140‑1 (MQ=255) tcgCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGa > 1:2539425/1‑140 (MQ=255) cTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGa < 2:2051860/94‑1 (MQ=255) cTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATcc > 1:1921710/1‑140 (MQ=255) ggTTTTAAAAGGGTTTTATCATCGCATTGTCCTAAAAAGCTCGTGAAAATTTTATCCTTTAGCACGAAAAAGAGTTACTTGCGTTATACCCCTTTTGTATTCATAAACACGACTCGCCAACCGTCCGGATCCTCTATCGt < 2:1343499/139‑1 (MQ=255) cGTTTTACAAGTTTTTTGACAGCGATTTTTAATAAAAAGCTCGTTAATATTTTATCCGTTCGAACTAAAAATAGTTACTGGCCTTATATCCCTTTTTTTTACAAAAACACGACTCGCCAACCGTCCGGATCCTCTATCGt < 1:3321250/140‑1 (MQ=255) cGTTTTACAAGCGTTTTCTCATCGCTTTGTCCTAAAAAGATCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGt < 2:4102781/140‑1 (MQ=255) ttttACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTTAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGACCGGATCCTCTATCGTCa < 2:1103551/140‑1 (MQ=255) tttACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCAc > 1:4292264/1‑140 (MQ=255) tttACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCAc > 2:755689/1‑140 (MQ=255) tttACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCAc > 2:3228822/1‑140 (MQ=255) ttACATGTGTTTACTCATGGCTTTGTCATAAAAAGCTCTTGAACCTTTTATCCTTTTGAACTAAAATGTGTTCGTTGCCTGATATCCATTTTGTATTCTTAAAAACGACTCGCCAAACGTCCGGATCCTCTATCGTCACg < 2:5648877/140‑1 (MQ=255) ttACACGCGTTTTCTCACCGCTTTGTCCTAAAAAGCTCTTTAAACTTTTATCCGTTAGCACCAAACAGAGTGACTTGCCTGATATCCGTTTTGTTTTAATAAACACGACTCGCCAACCGTCCGGATCCTCTATCGTCACg < 1:2461390/140‑1 (MQ=255) ttACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCAGGATCCTCTATCGTCAcc > 2:5767886/1‑139 (MQ=255) ttAAAAGCTTTTTCTCATCGCATTTTCATAAAAAGCTCGTTAAACTTTTAGCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACg < 2:4253688/140‑1 (MQ=255) aCAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAAGCGTCCGGATCCTCTATCGTCACGcc > 2:1250986/1‑140 (MQ=255) aCAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGcc > 2:2573862/1‑140 (MQ=255) aCAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAAACGTCCGGATCCTCTATCGTCACGcc > 1:5170421/1‑140 (MQ=255) gttttttCTCTTCGCTTTGTCCTAAAAAGCTCGTTAAAATTTTATCCTTTACCACGAAAATGATTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCa < 2:1458633/137‑1 (MQ=255) gctgttactcAGCCCATGGTCCAAAAAACCTCCTCAAACTTTTATCCCGACCCACAAAAAAGTTTTAGTTGCCTGATAACCCTTTTGTATTCAAACACACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCa < 1:3942012/133‑1 (MQ=255) gtttttATCATCGATTTTTCCTAAAAAGCTGGTTAAACTTTTATCATTTACCACCAAAAATAGTTACTTGCCTTATATCCCTTTTTTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCAt < 2:2282890/138‑1 (MQ=255) ggTTTTCTCTTCGCATTTTCCTAAAAAGCTCGTTAAACTTTTATCATTTAGCACGAAAAAGAGTTATTTGCATTATATCCCTTTTTTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCAt < 2:3743751/139‑1 (MQ=255) ggTTTTCTCTTCGCATTGTCCTAAAAAGCTCTTTAAACTTTTATCCTTTAGCACGAAAATGTGTTACTTGCCTGATATCCCTTTTGTTTTAATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCAt < 2:5097251/139‑1 (MQ=255) ctttttCTAATCGATTTTTCATAAAAAGCTCTTTAAATTTTTTTCCTTTACCACTAAAAATTTTTTGTTGCTTGATATCCCTTTTTTATTAATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCAt < 1:4625966/138‑1 (MQ=255) ttttCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATgg > 1:1799860/1‑140 (MQ=255) tttCTCATCGCATTGTCCTAAAAAGCTCTTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCATTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGc < 2:4846877/140‑1 (MQ=255) tttATCATGGTATTGTCCAAAAAAGCTGTTTATATTTTTTTCTTTTAGCACCAAAAATATTAATTGGCCATATATCCCTTTTTTATTCATAAAAACGACTCGCCAACCGTCGGGATCCTCTATCGTCACGCCTCCATGGc < 2:4923963/140‑1 (MQ=255) ttCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCt > 1:1185492/1‑140 (MQ=255) tcacctCGCATTGTCCTAAAAAGCCCGTCAAACTTTTAGCCTTTACAACGAAAACGAGGTACTGGCCTGATATCCGTTTTGTATTCATAAACACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCTc < 2:554354/135‑1 (MQ=255) ccGCATGGTCCTAAACAGCGCGTCAAACTTTTATCCTTTAGCACGAAAAAGTGTTACTTGCCTGATCTCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCTCCAGTa < 2:2517803/139‑1 (MQ=255) cGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCTCCAGTAc > 1:393595/1‑140 (MQ=255) agctttGTCCTAAAAAGCTCGTTAAATTTTTATCCTTTAGCACTAAAATGAGTTAGTTGCCTGATATCCCTTTTTTTTTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCTCCAGTAc < 2:3803429/136‑1 (MQ=255) cATTGCCCAAAACCGCTCGCCAAAATTTTATCCGTAACTAACAAACAGTGTTAGTGGCGTGATATCCCTTTTGTATGAAAAAACACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCTCCAGTACgg < 1:1398532/140‑1 (MQ=255) tCCTAAAAAGCTGGTGAAACTTTTATCCTTTCCCACCAAAAAGAGTTAGTGGCCTGATATCCCTTTTGTATACAAAAACACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCTCCAGTACGGGTtct < 1:1749646/140‑1 (MQ=255) tCCTAAAAAGATCGTTAAATTTTTATCCTTTCGCACGAAAAAGAGTTAGTTGCCTTATATCCCTTTGGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCTCCAGTACGGGTtct < 2:1284503/140‑1 (MQ=255) | TCAAAACGATTCTATTCAAACAAATCAAGTTTATCAGTGAAGAAACAGAAAGTCAATTGTAAATCCGAACATTAAATTAATGTAAATCAATATTCGTTCGCTTCCATTCGTTTTACAAGCGTTTTCTCATCGCATTGTCCTAAAAAGCTCGTGAAACTTTTATCCTTTAGCACGAAAAAGAGTTACTTGCCTGATATCCCTTTTGTATTCATAAAAACGACTCGCCAACCGTCCGGATCCTCTATCGTCACGCCTCCATGGCTCCAGTACGGGTTCT > NZ_CP034943/3996718‑3996994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |