| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 4,022,645 | G→C | 5.2% | A623P (GCA→CCA) | EO946_RS20675 → | thioredoxin domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 4,022,645 | 0 | G | C | 5.2% | 1066.4 / 4.5 | 410 | A623P (GCA→CCA) | EO946_RS20675 | thioredoxin domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (158/217); new base C (2/29); total (161/249) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.12e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 414 total aligned reads displayed.
TGTGTTCAAGCCGGATATCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACAACCGTGTATATTTGTGAAAACTTCG > NZ_CP034943/4022506‑4022783 | tgtgTTCAAGCCGGATATCGAAGCGTATCCGAGCGTCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTg < 1:1409722/140‑1 (MQ=255)tgtgTTCAAGCCGGATATCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTg < 2:4812204/140‑1 (MQ=255)tgtgTTCAAGCCGGATATCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTg < 1:854289/140‑1 (MQ=255) gtgtTCAAGCCGGATATCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGc < 2:2371240/140‑1 (MQ=255) tgtTCAAGCCGGATATCGCAGCGTATCCGAGCGGCCATTCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGACTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACTATCCAGCCAGAAAACAAATCACCACTGCa < 1:187495/140‑1 (MQ=255) aaGCCGGATATCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCa > 1:2099320/1‑140 (MQ=255) aaGCCGGATATCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCa > 1:3325418/1‑140 (MQ=255) ggATATCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAg > 2:2589384/1‑140 (MQ=255) ggATATCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAg > 1:3047656/1‑140 (MQ=255) atCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCtt < 2:5693337/140‑1 (MQ=255) tCGAAGCTTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCttt < 2:4588468/140‑1 (MQ=255) cGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTa < 2:4518309/140‑1 (MQ=255) cGTATCCTCGCGGCCTGGCTTTCTTTCTGAAATGTGTGTTAAAGCTTTTGATGCCTAAAAAGTAAATCGTTATTTTTGGCAGCGCAGACGATCCTGCAAGAAAACAAATCACCACTGAAATTAAAAAACCCTTTAAGccc < 2:2904835/140‑1 (MQ=255) tCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACg > 2:1050689/1‑140 (MQ=255) tCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACg > 1:3548322/1‑140 (MQ=255) aGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTc > 2:3560109/1‑140 (MQ=255) gCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCAtt > 1:2449942/1‑140 (MQ=255) gCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCAtt > 2:408266/1‑140 (MQ=255) ccATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCAttt > 1:1545735/1‑140 (MQ=255) ccATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCAttt > 2:1117444/1‑140 (MQ=255) ctttctttCTTCAAAGCGTGTTAACGCATGTGATGCCTAAAAAGGAAATCGTTATTGTGGGCAGCGCAGACGATCCCGCCACAAAAAAAATCACCACGGCAATTCAAAACGCCTTTAAGCCCACCGACTCCATTTtggtg < 2:608365/140‑1 (MQ=255) ctttctttATGCAAAGCGTGTTAAAGCATGTCATGCCTAAAAACGAAATCGTTTTTTTTGCCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAACCCCAACGACTCCATTTtggtg < 2:1735261/140‑1 (MQ=255) cgttctttATCAAAAGCGTTTTAAAGATTGTGAGGCCAAAACACCAAATCGTTATTTTTGGCAGCGCACACCATCCCCCAAAAAAAAAAATCACCACTGCACTTCAAAACGCCTTTAACCCCCACGACTCCATTTtggtg < 1:3782388/138‑1 (MQ=255) ttttTGAAAAGCTTTTAAAAGCTTGTGATGCCTAAAAAGTAAATCGTTATTTTTGGCAGCGCCCACTAACCCCCCAGAAAAAAAATAACCACTCCACTAAAAAAAGCCTTTAACCCCAACGACTCCATTTTGGTGGCaga < 1:3989190/140‑1 (MQ=255) tttATGCAAAGCGTGTTAAAGCATGTTATGCCTAAAAAGCAAATCGTTATTTTTGGCAGCGCAGACGATCCACCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCaga < 2:51000/140‑1 (MQ=255) tttATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCaga > 1:5361988/1‑140 (MQ=255) tttATGAAAAGCTTTTTAACGCATGTGAGGCATAAAAAGCAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATAACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCaga < 2:5163604/140‑1 (MQ=255) tttATGAAAAGCGTGTTAAACCATGTGATGCCTAAACAGGAAATCGTTATTTTTGGCAGCGAAGACGAGCCAGCCACAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAACCCCAACGACTCCATTTTGGTGGCaga < 2:4847259/140‑1 (MQ=255) tatcaaaaGGGTTTTAACGCATGTTATGAATAAAACGGAAATCGTTTTTTTTGGCACCGCTGACGATCCAGCCACAAAACAAATCACCAGTGCATTTAAAAAACCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGc < 2:627477/135‑1 (MQ=255) tGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCAt > 2:3732855/1‑140 (MQ=255) tGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCAGTTTGGTGGCAGAGCAt > 1:2873604/1‑140 (MQ=255) tGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACGTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCag > 2:3871921/1‑139 (MQ=255) gCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATc > 1:1193255/1‑140 (MQ=255) cAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATcc > 1:3441521/1‑140 (MQ=255) aGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGa > 1:3162010/1‑140 (MQ=255) aGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGa > 1:608606/1‑140 (MQ=255) aGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGa > 2:581215/1‑140 (MQ=255) gCGTGTAAAAGCATGTGATGCCTAAAAAGGAAATCTTTATTTTTGGCAGCGCAGACGACCCAGCCTGAAAACAAATCACCACTGCACTTCAAAACGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGAt < 2:198615/140‑1 (MQ=255) ggtgtTAAACCATGTGTTGCCTAAAAAGGAACTCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACAACTGCACTTAAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATc < 1:804895/139‑1 (MQ=255) cGTGTTACATCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCCACGACTCCATTTTGGTGGCAGAGCATCCTGATc < 2:2739444/140‑1 (MQ=255) gtTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATc < 2:717563/137‑1 (MQ=255) gtTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAAt > 2:3925747/1‑140 (MQ=255) ttAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCa < 2:2503874/81‑1 (MQ=255) tAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGc < 1:2695814/140‑1 (MQ=255) aaaGCTTGTTATGCCTACAAAGTAAATGGTTATTTTTGGCAGCGCAGACTATCCAGCCACAAAACAAATCACCACTGCACTCCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCa < 1:4514907/140‑1 (MQ=255) aaGCATGTGATGCCTAAAAAGTAAATCTTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCaa < 2:2837230/140‑1 (MQ=255) aaGCATGTGATGCCTAAAAAGGAAATCTTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCaa < 2:5552895/140‑1 (MQ=255) aaGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCaa < 2:5358337/140‑1 (MQ=255) aaGCATGTGATGCATAAAACGTAAATCTTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCaa < 1:5443632/140‑1 (MQ=255) aaGCATGTGATGCAAAAAACGCAAATCTTTATTTTTGGCAGCGCAGACGATCCACCCACAAAAAAAATCACCACTGCACTAAAAAACGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCaa < 1:3639646/140‑1 (MQ=255) aGCATTTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCAATTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCaaa < 2:5294201/140‑1 (MQ=255) aGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAACGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCaaa < 2:2795331/140‑1 (MQ=255) gcttgttATGCATAAAAAGTAAATGTTTTTTTTTGGCAGCGCAGACGATCCACCCAAAAAACAAACCCCCCCTGCACTTCAAAACCCCTTTACGCCCCACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAg < 1:698281/137‑1 (MQ=255) gaaTGTTAGGCCTAAAATCAAATTCGTTATTTTTGGAAGCGCATCCCAGCCCGCCAGAAAAAAAATCACCACTTCACTTCAAAAACCTTTTAACCCAAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAg < 1:1026442/138‑1 (MQ=255) gaaTGTGATGCCTAAAACGTAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAg < 2:2990385/138‑1 (MQ=255) gCATCTGATGCCTAAAAAAGAAATCGTGATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAg < 2:3427643/140‑1 (MQ=255) cATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGATAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCCTTTTGGTGGCAGAGCATCCTGATCAATGCAAAGa > 2:1815953/1‑140 (MQ=255) tgtgATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCATACGATCCAGCCAGAAAACAAATCACCACTGCACTGCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCAGGATCAATGCAAAGACa > 1:1620042/1‑140 (MQ=255) tgtgATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTGCATTTTGGTGGCAGAGCATGCTGATCAATGCAAAGAcc > 1:3729251/1‑139 (MQ=255) tgtgATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCaa > 2:4185130/1‑135 (MQ=255) tgtgATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCaa < 1:4185130/135‑1 (MQ=255) tgtgATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAg > 1:5296352/1‑137 (MQ=255) tgtgATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACa > 2:4153114/1‑140 (MQ=255) tgtgATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACa > 1:1450619/1‑140 (MQ=255) gtgATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAACAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGTCAt > 2:5489486/1‑140 (MQ=255) tgtttaatAAAAAGTAATTCTTTATTTTTGGCAGCGCATACGATCCTGCAATAAAACAAATCACCACTGAAGTAAAAAAAGCCTTTAACCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATa < 1:1851491/133‑1 (MQ=255) ggATGCCTAAAAAGCAAATCGTTATTTTGGGCAGCGCAGACGATCCAGCCACAAAAAAAATCACCACGCCAATTCAAAACGCCTTTCACCCCCACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATa < 1:2301752/139‑1 (MQ=255) atgcaaaaaaaGGAACTGGTTATTTTTGGAAGCGCATACGATCCAGCCACAAAAAAAAACACCACTCAACTACAAAAACCCTTTAACCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGc < 1:1098006/134‑1 (MQ=255) tGCCTAAAACGTAAATCGTTATTTTGGGCAGCGCTGAATATCCAGCCATAAAAAAAATCACCAGTCCCCTACAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCa < 2:2423240/140‑1 (MQ=255) tGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCa < 2:3812330/140‑1 (MQ=255) tGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGAACTTCAAAACGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCa < 2:1440555/140‑1 (MQ=255) tGCCTAAAAAGCAAATGTTTATTTTTGGCAGCGCAGACTATCAAGCAATAAAAAAAATCACCACTGCAATTAAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCa < 1:484328/140‑1 (MQ=255) gCCTACAACGCAACTCGTTTTTTTTGGCAGCGCAGACGATCCAGCCACAAAACAAATCACCACTGCACTTCAAAACGCCTTAAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCAc < 1:5020955/140‑1 (MQ=255) ccTAAAACGGAAATCGTTATTTTTGGCAGCGCAGACGAGCCAGCCAGAAAACAACCCACCACTGAACTACAAACAGCATTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCAcc < 1:5139599/140‑1 (MQ=255) ccTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTtggtg > 1:3005323/1‑105 (MQ=255) cTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCCCTGCACTTCAAAAAGCCTTTAAGCCCAACGGCTCCATTTGGGTGGCAGAGCATCCTGATCAATGCACAGACATAGCTccc > 2:5271987/1‑140 (MQ=255) cTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCAccc > 2:3025571/1‑140 (MQ=255) aaaaaGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCtt < 2:1193255/140‑1 (MQ=255) aaaaaGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGACCAACGACTCCATATTGGTGGCAGAGCATCCTTATCAATGCAAAGACATAGCAACCtt > 1:5540115/1‑140 (MQ=255) ggAAATCGTTATTTTTGGCAGCGCAGACGATCCACCCAGAAAACAAATCACCACTGCACTAAAAAAAGCCTTTAACCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTgcag < 1:4644976/140‑1 (MQ=255) aaaTCTTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAAAAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTgcagca < 1:1336592/140‑1 (MQ=255) aaTCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGcagcag > 2:4423739/1‑140 (MQ=255) gTTTTTTTTGGCAGCGCAGACGATCCAGCAATAAAAAAAATCACCACTGAACTTCAAAACGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTa < 1:2803846/140‑1 (MQ=255) gTTATTTTTGGCAGCGCAGACGATCCAGCAAGAAAACAACTCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTa < 2:4709085/140‑1 (MQ=255) tATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACGGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTAcc < 2:2178725/140‑1 (MQ=255) ccgcAGACGACCCCCCCACAAAAAAAATCCCCACGGCACGTCAAAAAGCATTTAAGCCCAACGACTCCCTTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGAc < 1:256465/139‑1 (MQ=255) aTCCAGCCCGAAAACAAAACACCACTGCAATTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAaaca < 1:5762327/140‑1 (MQ=255) tCCAGCCAGAAAAAAAATCACCACTCCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAaacaa < 2:3541743/140‑1 (MQ=255) tCCAGCCAGAAAAAAAATCACAACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAaacaa < 2:3256859/140‑1 (MQ=255) tCCAGCAATAAAACAAATCACCACTGCACTTAAAAAAGCCTTTACCCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAaacaa < 2:1474212/140‑1 (MQ=255) ccgccagAAAACAAATCACCCCTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACAAcc < 1:2189220/138‑1 (MQ=255) cagcaacAAAAAAAATCACCCCTGCACTAAAAAACGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACAAcc < 1:4328820/140‑1 (MQ=255) gAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACAACCGTGtat > 2:1297198/1‑140 (MQ=255) aaaTCACCACTGCACTTAAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACAACCGTGTATATTtgt < 2:4960709/140‑1 (MQ=255) tGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCt < 2:5635956/80‑1 (MQ=255) tGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCt > 1:5635956/1‑80 (MQ=255) tGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACAACCGTGTATATTTGTGAAAACTTCg > 1:4934700/1‑140 (MQ=255) tGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACAACCGTGTATATTTGTGAAAACTTCg > 2:5737777/1‑140 (MQ=255) tGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACAACCGTGTATATTTGTGAAAACTTCg > 1:1283092/1‑140 (MQ=255) tGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGAAATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACACACGTGTATATTTGTGAAAACTTCg > 1:4775423/1‑140 (MQ=255) | TGTGTTCAAGCCGGATATCGAAGCGTATCCGAGCGGCCATGCTTTCTTTATGCAAAGCGTGTTAAAGCATGTGATGCCTAAAAAGGAAATCGTTATTTTTGGCAGCGCAGACGATCCAGCCAGAAAACAAATCACCACTGCACTTCAAAAAGCCTTTAAGCCCAACGACTCCATTTTGGTGGCAGAGCATCCTGATCAATGCAAAGACATAGCACCCTTTGCAGCAGACTACCGCATCATAGACGGCAAAACAACCGTGTATATTTGTGAAAACTTCG > NZ_CP034943/4022506‑4022783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |