Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP034943 | 17,887 | 0 | G | T | 24.1% | 226.7 / 15.4 | 117 | E248D (GAG→GAT) | dacA | D‑alanyl‑D‑alanine carboxypeptidase |
Reads supporting (aligned to +/- strand): ref base G (63/25); new base T (0/28); total (63/54) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.51e-12 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 123 total aligned reads displayed.
TTCTTGCGGATCACTTGATTACTGACTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATCTACATACAGGC > NZ_CP034943/17748‑18025 | ttCTTGCGGATCACTTGATTACTGACTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAg > 1:2167354/1‑140 (MQ=255) ttCTTGCGGATCACTTGATTACTGACTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAg > 2:2011660/1‑140 (MQ=255) ttCTTGCGGATCACTTGATTACTGACTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAg > 2:2011258/1‑140 (MQ=255) ttCTTGCGGATCACTTGATTACTGACTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAg > 1:816709/1‑140 (MQ=255) cACTTGATTACTGACTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAAGTGGAACTTTATGCTGAATGGGCTTGTCAGCGAGTATAAAAAAGc > 2:1612434/1‑140 (MQ=255) tttttttACTGACTACCTTTAGATTGTGGATACTTCCTGTTTCTCTAAAACGATGTTCATATACGCCACAGTTGATTAACGGGACATG‑CCGAACTGTAAATTTTTGCTCAACGGGGTTGTCAGCGAGTATAAAAACGCGa < 2:439272/135‑1 (MQ=255) cTTGATTACTGACTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGa > 2:1874502/1‑140 (MQ=255) tACTGACTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAg > 1:1431350/1‑140 (MQ=255) cgcacgaCCATGAGATGCGGGACACTCCCTGTCTCCCTAACACTAAGTTCAGATAAGGCAGAGATGAGCAAATTCAAATG‑CCGAACTGCAACTTTATGCTGAAAGGGGTTTCCCTCGAGTATAAAAACGCGACTGTAGAc < 2:629863/134‑1 (MQ=255) aCTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAACTGGACATG‑CCGAACTGTAACTTTATGCTGAAAGGGCTTGTCAGCGAGTAGAAAAAAGCGACTGTAGACGGa > 1:2118852/1‑140 (MQ=255) aCTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGa > 1:220974/1‑140 (MQ=255) tACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGAtt > 2:1130185/1‑140 (MQ=255) tACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGAtt > 1:638954/1‑140 (MQ=255) aCCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGAcctgtct > 1:1420721/1‑134 (MQ=255) aCCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGAcctgtct > 1:1751892/1‑134 (MQ=255) aCCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTg > 2:1929941/1‑140 (MQ=255) aCCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTAAGCGAGTATAAAAAATCGACTGTAGACGGATTg > 1:2362407/1‑140 (MQ=255) cccTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGa > 2:2457392/1‑140 (MQ=255) gagtTTCTGTATACTTCAATTATCGATAAAACGAAGTTCAGACACGCAACATATTATGAAATGGA‑ATGCCCGAATTGTAACTTTATGCTTACTGGGCTTGTAAGCGATTATAAAAAAGCGACTGTAGACGGATTGAAAAc < 2:2208447/140‑1 (MQ=255) gagaTTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAAc > 1:986828/1‑140 (MQ=255) ttgtGGATACTTCCATTTTCTATAAAACGATGTTCCTAGAAGGAACATTTTTTTAAATGCCACTG‑CCGATCTGCATTTTTATGCTGAACGGGGTTGTCAGCGATTAAAAAAAAGCGACTGTAGACGGATTGAAAACAGGt < 2:1774481/137‑1 (MQ=255) cTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTCGACGGATTGAAATCAGGTTc > 1:2511523/1‑140 (MQ=255) tGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCt > 1:875806/1‑140 (MQ=255) tGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCt > 2:1320066/1‑140 (MQ=255) ggAGACTTCCAGTATCGCTAAAACGACGTTCAGAGACGCCACAGATTATGAAATGGACAGG‑CGGAACTGGAACTTTATGCTCACCGGGCTTGCCAGCGTGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTa < 2:941031/140‑1 (MQ=255) ttCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGAct > 2:2422430/1‑140 (MQ=255) ttCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGAct > 1:1142952/1‑140 (MQ=255) ttCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGAct > 1:1138915/1‑140 (MQ=255) ttCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGAct > 1:1516826/1‑140 (MQ=255) ttCCAGTATCGCTAAAACGAACTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATCCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTCAct > 1:1611802/1‑140 (MQ=255) ccAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGActct > 2:705418/1‑140 (MQ=255) cAGTATCGCTAAACCGACTTACCGAGAACCCACATATGTTTAAAGGCACACG‑CCCAACTGGAATTTTATGCTCAACGGGCTGGTCAGCGATTAAAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTg < 2:1214376/140‑1 (MQ=255) tCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGGTGTATGGGCTTGTCAGCGAGGATAAAAAAGGGACTGTAGAGGGATTGAAAACGGGGTCTACTGCCTgggcgggc > 2:1488131/1‑140 (MQ=255) tCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGc > 2:337277/1‑140 (MQ=255) ctaaaaaaCCAAGTTCAGACACGCCACATATGATTAAATGCCAATG‑CCTAACTGCAACTTTATGCTTAACGGGGTTGACCGCGAGTAAAAAAACGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCt < 1:1827009/136‑1 (MQ=255) atAAAACGACGTTCTGACCCGGACCTGATGATTAAAGGCACCTG‑CCTAACTGGAACTTTCTGCTGAAAGGGCTTGTCAGCGAGAAAAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCa < 2:220974/139‑1 (MQ=255) acccgcaGTGCAGAGCCGCCACAGCTGCTTAATGGGACAGG‑CCGAACTGGAACTTTATGCTGAACGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGc < 2:638954/134‑1 (MQ=255) gAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTa > 2:980253/1‑140 (MQ=255) aatttCAGACACGCCACAGATGATTAACTGGACATG‑CCTAACTGCAACTTTATGCTGAAAGGGCTTGTCAGCGAGTAAAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTAc < 2:1777405/137‑1 (MQ=255) ttCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTTAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAgg > 2:2357000/1‑140 (MQ=255) aagagAAGCCACAGATTTTTAAATGGACATG‑CCGAACTGGAAATTTTTGCTGAACGGGCGTGTCCTCTAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGaa < 2:360434/139‑1 (MQ=255) agaAGCCACATATTATGAATTGCACTGG‑CCCAACTGCAAATTTATGCTCAACGGGCTTTTCAGCTCTTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAg < 2:458279/140‑1 (MQ=255) gcaaatttgattaACTGGACATG‑CCGAACTGGAAGTTTATGCTGAACGGGTTTGGCAGCGATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGaa < 2:1574008/133‑1 (MQ=255) gCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAACGCGACTGGAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGACCAGCTGaa > 1:1561152/1‑140 (MQ=255) gCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGaa > 2:749581/1‑140 (MQ=255) gCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGaa > 1:778962/1‑140 (MQ=255) gCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGaa > 1:1006334/1‑140 (MQ=255) gCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGaa > 2:260866/1‑140 (MQ=255) cacaTATTATTAATTGGACAGG‑CCTAACTGGAAATTTATGCTGAATGGGCTTTTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAAc < 2:2149857/140‑1 (MQ=255) gatgatGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCaa > 1:1960034/1‑140 (MQ=255) tgaAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGaa > 1:2131296/1‑140 (MQ=255) tgaAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGaa > 2:1572466/1‑140 (MQ=255) gaAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTCGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAAt > 2:667844/1‑140 (MQ=255) aattGGACAGG‑CCGAACTGGAATTTTAGGCTGACTGGGCTTTTCCGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATg < 2:1942815/137‑1 (MQ=255) aatgggACTTG‑CCGAATTGTAAATTTATGCTGAAAGGGGTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATg < 2:1960034/136‑1 (MQ=255) aaaggcaCAGG‑CCGAACTGGAAATTTATCGACACAGGGCTGTACAGGGAGAATAAAAAAGCGACTGTAGACGGATTTAAAACAGGTTCTACTGAATATGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATg < 2:1453927/134‑1 (MQ=255) aaaTGTACATG‑CCTAACTGTAACTTTTTGCTGACAGGGCTTGTCAGCTATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATg < 2:816709/140‑1 (MQ=255) aaaTGGACCTG‑CCGAACTGTAATTTTATGCTGAACGGGTTTGTCAGCGAGTAAAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATg < 2:1142952/140‑1 (MQ=255) aaaTGGACAGG‑CCCAACTGGAACTTTATGCTGAACGCGCTTGTCAGCGATTAAAAAAACGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATg < 1:1874502/140‑1 (MQ=255) aaaTGGAATTG‑CCTAACTGTAATTTTTTGCTGAAAGTGCTTGTCAGCGATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATg < 2:549900/140‑1 (MQ=255) ttgtcaaTG‑CCGAACTGTAACTTTATGCTGAATGGGATTTTCAGCTATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCg < 1:2474123/134‑1 (MQ=255) ttgcaaaTG‑CAGAACTGCACCTTTATGCTGAACGGGTTTGTCAGCGTTTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCg < 2:1923036/134‑1 (MQ=255) ttgcaCAGG‑CCCAACGGCAATTTTTTGCGAAACGGGCTTGAACGCTAGAATAACAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCg < 1:1071931/136‑1 (MQ=255) ttGGACATG‑CCTAACTGGACCTTTAGGCAGAATGGCCTTGTCAGCTAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCg < 2:590037/139‑1 (MQ=255) ggACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGACCAGCTGAACTCAACGGAATGCgtg > 1:191629/1‑140 (MQ=255) ggACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCgtg > 1:2080410/1‑140 (MQ=255) ggACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCgtg > 1:191644/1‑140 (MQ=255) ggACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCgtg > 1:411968/1‑140 (MQ=255) gACATG‑CCTAACTGTAATTTTATGCTGAACGGGTTTGTCAGCGATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCgtgt < 1:1120487/140‑1 (MQ=255) aCATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGtt > 2:764925/1‑140 (MQ=255) g‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGttatta < 2:1431350/140‑1 (MQ=255) g‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGttatta > 1:1996694/1‑140 (MQ=255) ccGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTAc > 2:85457/1‑140 (MQ=255) aCTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACtgtt > 1:465621/1‑140 (MQ=255) aCTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACtgtt > 1:465280/1‑140 (MQ=255) aCTTTATGCTGACTGGGTTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTa < 2:763863/140‑1 (MQ=255) tggtGAAAGGGATTGTCTGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCa < 2:2244165/137‑1 (MQ=255) tGCTGACAGGGGTTGTCAGCGATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCa < 2:1783773/140‑1 (MQ=255) tGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCa > 1:662396/1‑140 (MQ=255) tGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCa > 1:1559512/1‑140 (MQ=255) ctgaccggggTTTTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCaaa < 1:1648904/134‑1 (MQ=255) aaaGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAgg > 2:323416/1‑140 (MQ=255) aaaGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAgg > 1:97251/1‑140 (MQ=255) tcggggTTGTCTGCTATTATAAAACAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGc < 2:2070177/138‑1 (MQ=255) ctgggCTTGTCAGCGAGTATAACAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGc < 2:387836/138‑1 (MQ=255) caGGGGTTGTCAGCGATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGc < 2:1516826/139‑1 (MQ=255) atgggTTTGACAGCGATCAAAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGc < 1:686790/138‑1 (MQ=255) atgggCTTGTCAGTGTTTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGc < 2:1006334/138‑1 (MQ=255) atgggCTTGTCAGCTATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGc < 1:1754695/138‑1 (MQ=255) aatgtcTTGTCAGCGATAATAAAACAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGc < 2:1434292/135‑1 (MQ=255) aaGGGCTTTTCAGCGTTTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGc < 2:1665809/140‑1 (MQ=255) ttttttCAGCTATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATc < 1:1320927/135‑1 (MQ=255) gtttGTCAGCTATTAAAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATc < 1:1320066/138‑1 (MQ=255) gtttGTCAGCGAGTATAACAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATc < 2:2346140/138‑1 (MQ=255) ggttGTCAGCTAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATc < 1:448934/138‑1 (MQ=255) gCTTGTCAGCTATTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATc < 2:2367537/140‑1 (MQ=255) tCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATCtacat > 1:1377820/1‑140 (MQ=255) gAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGACTGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATCTACATACAgg > 2:2501379/1‑140 (MQ=255) gAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATCTACATACAgg > 2:1811059/1‑140 (MQ=255) aGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATCTACATACAGGc > 2:2010069/1‑140 (MQ=255) | TTCTTGCGGATCACTTGATTACTGACTACCCTGAGATTCTGGAGACTTCCAGTATCGCTAAAACGAAGTTCAGAGAAGGCACAGATGATGAAATGGACATG‑CCGAACTGGAACTTTATGCTGAAAGGGCTTGTCAGCGAGTATAAAAAAGCGACTGTAGACGGATTGAAAACAGGTTCTACTGACTCTGCGGGCTCATGCTTTACAGGAACAGCTGAACTCAACGGAATGCGTGTTATTACTGTTGTATTAAACGCAAAAGGCAATCTACATACAGGC > NZ_CP034943/17748‑18025 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |