New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009974	418657 =	1 (0.000)	173 (0.670) +AAGAAGC	102/214	4.0	96.7%	intergenic (‑236/+415)	RPPX_01715/RPPX_01720	hypothetical protein/lipoprotein
	?	CP009974	= 4147133	12 (0.040)					intergenic (+385/‑636)	RPPX_18425/RPPX_18430	enoyl‑CoA hydratase/conjugal transfer protein TraR
Rejected: Coverage evenness skew score above cutoff.

CATCGCAAATGGACTGTTCGCTGAGTCAAAACAGACAAGTTC‑‑‑‑‑‑‑GCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACG  >  CP009974/418615‑418807                                                  |                                                                                                                                                       gaTCGCAGATGGGCTGTTCGCTGGGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCGCCTTTCCGCCCt                                                   <  2:2430599/150‑1 (MQ=11)                      tGAGTCAAACCAGTCAAGTGC‑‑‑‑‑‑‑GCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTGGGAGGTGGGCATTCACAGTGAGTAGGTCTTCGTTCGCGCCGGTGGCGCATAGTCACGTGTCCGCCCTTATGGTTGGTCACTTTTTGTCAAAcgcg                       <  2:4713263/151‑1 (MQ=11)                                           gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCa         >  2:6528455/8‑151 (MQ=21)                                           gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCa         >  2:1767839/8‑151 (MQ=25)                                           gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACTCGCCAAAAAGTAACCa         >  2:619024/8‑151 (MQ=11)                                           gcttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCa         >  1:2217349/8‑151 (MQ=255)                                            cttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaa        >  1:3309202/7‑151 (MQ=255)                                            cttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaa        >  2:2570600/7‑151 (MQ=255)                                             ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  1:1689922/6‑151 (MQ=25)                                             ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  2:7195435/6‑151 (MQ=21)                                             ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaa       >  1:3738938/6‑151 (MQ=25)                                             ttcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGCCAAAAAGTAACCaaa       >  2:2046304/6‑151 (MQ=11)                                              tcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaa      >  1:6212792/5‑151 (MQ=25)                                              tcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaa      >  1:4835518/5‑151 (MQ=25)                                              tcttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaa      >  1:6692105/5‑151 (MQ=255)                                               cttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaaa     >  1:3889014/4‑151 (MQ=25)                                                ttgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCaaaaaa    >  1:5655481/3‑151 (MQ=255)                                                 tgcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAAc   >  1:1616956/2‑151 (MQ=255)                                                  gcttcttgcttcttgcttcttgcttcttgcttcttGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACg  >  1:5729381/1‑151 (MQ=33)                                                  |                                                                                                                                                       CATCGCAAATGGACTGTTCGCTGAGTCAAAACAGACAAGTTC‑‑‑‑‑‑‑GCTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACG  >  CP009974/418615‑418807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.