| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009974 | = 5324681 | 0 (0.000) | 369 (1.060) | 195/286 | 0.1 | 100% | intergenic (+71/‑180) | RPPX_23670/RPPX_23675 | histidine kinase/integrase |
| ? | CP009974 | 5327261 = | NA (NA) | intergenic (+113/‑39) | RPPX_23680/RPPX_23685 | ATPase AAA/transposase | |||||
Only 100 of 442 total aligned reads displayed.
TCGGGCTGGAGATTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCTGCGGATTCCATGATCATCCGGACACCCATTCCACCGACATCCGGACACTAATTCCACAAGCATCCGGACACCGATTCCACGGCCATCCGGACACCTTCAGGCAGGCAGCAACGCAGGACTATTCACTACTATCGACCTCTTTTTTCGAA > CP009974/5324531‑5324831 | gggCTGGAGATTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcc > 1:2883564‑M1/1‑149 (MQ=255) ggAGATTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaaga < 2:75519‑M1/151‑8 (MQ=255) ggAGATTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCc > 2:466995‑M1/1‑144 (MQ=255) gagaTTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaa > 2:1283167‑M1/1‑143 (MQ=255) gagaTTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaa < 2:2450729‑M1/151‑9 (MQ=255) aTTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagtt > 1:5190014‑M1/1‑140 (MQ=255) tGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttgg < 2:2891664‑M1/151‑14 (MQ=255) tGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttgg > 1:1362359‑M1/1‑138 (MQ=255) gAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacac > 1:5946794‑M1/1‑134 (MQ=255) aaaGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacact > 1:2609403‑M1/1‑133 (MQ=255) aaaGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacact < 1:3016550‑M1/151‑19 (MQ=255) aaGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacacta < 2:7054246‑M1/151‑20 (MQ=255) aGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaa < 1:3839234‑M1/151‑21 (MQ=255) aGCGAATTGGGTGGGGCCAGGCGGGGATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaa < 2:6494827‑M1/151‑21 (MQ=255) aaTTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatcca > 1:5509401‑M1/1‑127 (MQ=255) aaTTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatcca > 2:5113246‑M1/1‑127 (MQ=255) aaTTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatcca > 1:6587603‑M1/1‑127 (MQ=255) gggtgggGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCCCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaagccaaccc > 2:554876‑M1/1‑123 (MQ=255) aGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatc > 1:6521578‑M1/1‑113 (MQ=255) ggTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgg < 1:5009460‑M1/151‑44 (MQ=255) aTTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggta < 1:1106960‑M1/151‑47 (MQ=255) aCTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtac < 1:1005053‑M1/151‑52 (MQ=255) cTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagctggacactaatccaacccttgggggatctacgggtacgtaca > 2:6136812‑M1/1‑99 (MQ=255) gCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacacc < 1:3524398‑M1/151‑55 (MQ=255) cccGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccg < 2:819348‑M1/151‑56 (MQ=255) ccGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccga > 2:6608170‑M1/1‑95 (MQ=255) cGCTTGCGGATCTAGGCAAGTAAAAGCGGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgag < 2:5358053‑M1/151‑58 (MQ=255) gCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagc > 1:3647948‑M1/1‑93 (MQ=255) gCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACGGCCcccaagaagttggacactaatcaaacccttgggggttctatgggcaagtgcaccgagc > 2:4340199‑M1/1‑93 (MQ=255) gCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaatt > 1:1248738‑M1/1‑89 (MQ=255) cGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattc > 2:1700881‑M1/1‑88 (MQ=255) cGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattc < 2:2737407‑M1/151‑64 (MQ=255) cGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattc > 2:3136557‑M1/1‑88 (MQ=255) ggATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattca > 1:1774911‑M1/1‑87 (MQ=255) ggATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattca > 2:6708190‑M1/1‑87 (MQ=255) gATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaa < 1:2417696‑M1/151‑66 (MQ=255) aTCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaag < 1:6297766‑M1/151‑67 (MQ=255) cTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagct > 2:4590174‑M1/1‑83 (MQ=255) cAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACAGTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacag > 1:3077344‑M1/1‑78 (MQ=255) aaGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagc > 1:2181122‑M1/1‑77 (MQ=255) gTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcga < 2:5841114‑M1/151‑77 (MQ=255) tAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgat > 1:1660766‑M1/1‑74 (MQ=255) aaGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcac < 2:6461742‑M1/151‑81 (MQ=255) aaGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcac > 1:5882122‑M1/1‑71 (MQ=255) aaGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcac > 1:4765925‑M1/1‑71 (MQ=255) gCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatcgatgggtaagtacaccgagcaattcaagctcacagcgatcacag > 2:6262943‑M1/1‑69 (MQ=255) cTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagctggacactaatccaacccttgggggaactatgggtaagtacaccgagcaattcaagcacacagcgctcacagc > 2:316972‑M1/1‑68 (MQ=255) tGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcc < 2:4477503‑M1/151‑85 (MQ=255) tGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcc > 2:3707917‑M1/1‑67 (MQ=255) gggCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagccta > 2:1881238‑M1/1‑65 (MQ=255) ggCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctac > 1:611165‑M1/1‑64 (MQ=255) ccGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacct < 1:5151122‑M1/151‑90 (MQ=255) gCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctgg > 1:4644782‑M1/1‑60 (MQ=255) ttGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacg < 2:2104665‑M1/151‑95 (MQ=255) cTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGGCATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggctctatgggtaagtacaccgagcacttcaagctcacagcgatcacagcctgcctggacggccgcaac > 1:6747528‑M1/1‑49 (MQ=255) ggCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacatcgagcaattaaagctcacagcgatcacagcctacctggacgccaccaacggcttcc > 2:3623004‑M1/1‑42 (MQ=255) ggCACGCCCGCGCCCACAAGGTGGCGCTACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttcc < 2:7185466‑M1/151‑110 (MQ=255) gCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccg < 2:5888165‑M1/151‑111 (MQ=255) gCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccg > 1:4124025‑M1/1‑41 (MQ=255) gCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaag < 2:481759‑M1/151‑115 (MQ=255) gCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaag > 1:4246138‑M1/1‑37 (MQ=255) gCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaag < 2:488945‑M1/151‑115 (MQ=255) gCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaag > 1:95781‑M1/1‑37 (MQ=255) cccGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaagg > 1:926300‑M1/1‑36 (MQ=255) tCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggct > 1:7196186‑M1/1‑31 (MQ=255) cccACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctc < 1:4976865‑M1/151‑122 (MQ=255) cccACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaagggggctc > 2:164860‑M1/1‑30 (MQ=255) cacaAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaa > 1:1153671‑M1/1‑28 (MQ=255) acaAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaac > 1:754817‑M1/1‑27 (MQ=255) acaAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaac < 1:3282416‑M1/151‑125 (MQ=255) caAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaaca > 2:1127300‑M1/1‑26 (MQ=255) tGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttag < 1:2311269‑M1/151‑131 (MQ=255) ggCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttagg < 1:880554‑M1/151‑132 (MQ=255) gcgcGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggt > 1:6888073‑M1/1‑19 (MQ=255) aCATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcga < 2:3405940‑M1/151‑138 (MQ=255) cATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggcaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgat > 2:3041272‑M1/1‑13 (MQ=255) aTTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatt < 1:5345393‑M1/151‑140 (MQ=255) ttGGACTGCCcccaagaagttggacaccaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttc < 1:7088256‑M1/151‑142 (MQ=255) ggACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcag < 2:3942821‑M1/151‑144 (MQ=255) ggACTGCCcccaagaagttggacaccaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcag < 2:6769316‑M1/151‑144 (MQ=255) gACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagt < 1:668460‑M1/151‑145 (MQ=255) aCTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtc > 2:1522819‑M1/1‑6 (MQ=255) aCTGCCcccaagaagttggacaccaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtc > 1:5789129‑M1/1‑6 (MQ=255) aCTGCCcccaagaagttggacaccaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctaaacacttaggtatcgatttcagtc < 1:1951141‑M1/151‑146 (MQ=255) cTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtct > 2:2200001‑M1/1‑5 (MQ=255) cTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtct < 2:41994‑M1/151‑147 (MQ=255) cTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatccattccagtct > 2:6038775‑M1/1‑5 (MQ=255) tGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctg > 1:4410086‑M1/1‑4 (MQ=255) tGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctg > 1:5420040‑M1/1‑4 (MQ=255) tGCCcccaagaagttggacaccaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctg < 2:2835802‑M1/151‑148 (MQ=255) gCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgc > 2:6807859‑M1/1‑3 (MQ=255) gCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgc < 1:1529091‑M1/151‑149 (MQ=255) gCCcccaagaagttggacactaatccaaccctcgggggatcgatgggtaagtacaccgagcaattcacgctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggaatcgatttgagtctgc > 2:692784‑M1/1‑3 (MQ=255) cccccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgct < 1:6419700‑M1/151‑150 (MQ=255) cccccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgct < 1:3370227‑M1/151‑150 (MQ=255) cccccaagaagttggacaccaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgct > 2:2296784‑M1/1‑2 (MQ=255) cccccaagaagttggacaccaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgct > 1:4217758‑M1/1‑2 (MQ=255) ccccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgctt < 1:2790759‑M1/151‑151 (MQ=255) ccccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgctt > 2:1474177‑M1/1‑1 (MQ=255) ccccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgctt < 1:3243760‑M1/151‑151 (MQ=255) | TCGGGCTGGAGATTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCTGCGGATTCCATGATCATCCGGACACCCATTCCACCGACATCCGGACACTAATTCCACAAGCATCCGGACACCGATTCCACGGCCATCCGGACACCTTCAGGCAGGCAGCAACGCAGGACTATTCACTACTATCGACCTCTTTTTTCGAA > CP009974/5324531‑5324831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |