Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099741,160,7790CT73.8% 840.7 / 281.0 452intergenic (+4302/‑10981)RPPX_05120/RPPX_05130hypothetical protein/channel protein TolC
Reads supporting (aligned to +/- strand):  ref base C (77/41);  new base T (178/155);  total (255/197)
Fisher's exact test for biased strand distribution p-value = 3.06e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 465 total aligned reads displayed.

AACGCCTGAGCCTGGTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCGATCGACAACAACGGCACCTCGTCG  >  CP009974/1160631‑1160929
                                                                                                                                                    |                                                                                                                                                      
  cGCCTGAGCCTGGTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGcc                                                                                                                                                    >  2:7166651/1‑151 (MQ=255)
   gCCTGAGCCTGGTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCg                                                                                                                                                   >  2:3824273/1‑151 (MQ=255)
     cTGAGCCTGGTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCgcg                                                                                                                                                 <  2:6663007/151‑3 (MQ=255)
     cTGAGCCTGGTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCgcg                                                                                                                                                 >  2:4155058/1‑149 (MQ=255)
        aGCCTGGTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGCTGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCgcgcgg                                                                                                                                              >  2:6816326/1‑146 (MQ=255)
        aGCCTGGTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTgg                                                                                                                                              >  2:2035073/1‑151 (MQ=255)
           cTGGTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGCTCTGCTCCTGCTGGTAGCCGCGTGGAAg                                                                                                                                           >  2:3506124/1‑151 (MQ=255)
             ggTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCCGCGGTTCTGCTGCTGCTGGTAGCCGCGTGGAAgcg                                                                                                                                         >  2:5182744/1‑149 (MQ=255)
               tACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCCGCATCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCa                                                                                                                                       >  2:5058142/1‑151 (MQ=255)
                aCAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCat                                                                                                                                      <  2:5496811/151‑1 (MQ=255)
                      cgaccAGAGCGGCAGCGCCTATGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGcc                                                                                                                                <  2:1555525/151‑1 (MQ=255)
                      cgaccAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGcc                                                                                                                                <  1:6329841/151‑1 (MQ=255)
                        accAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCaa                                                                                                                              >  2:6195866/1‑151 (MQ=255)
                         ccAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAAc                                                                                                                             <  2:2537511/151‑1 (MQ=255)
                                ggCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGATTCTGCTCCTGCTGGTAGCCGCGTGGAGGGGCATGATGCCAACGGCAcac                                                                                                                      >  2:3697030/1‑149 (MQ=255)
                                  cAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTg                                                                                                                    <  2:6423752/151‑1 (MQ=255)
                                      gCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCg                                                                                                                <  2:3028480/151‑1 (MQ=255)
                                      gCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCg                                                                                                                >  1:4304869/1‑151 (MQ=255)
                                           tGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGc                                                                                                           <  1:810246/151‑1 (MQ=255)
                                           cgAAGTCCTGACCTACGACGTGCCACGAGTAGTCACCCCGACCAGCCCAAGAGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTGGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGc                                                                                                           <  1:5455752/150‑1 (MQ=255)
                                               gTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCg                                                                                                       >  1:4632624/1‑151 (MQ=255)
                                               gTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCg                                                                                                       <  1:5583385/151‑1 (MQ=255)
                                                   tGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCgtggt                                                                                                   >  1:7109840/1‑151 (MQ=255)
                                                         acgacgTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGc                                                                                             <  1:992615/151‑1 (MQ=255)
                                                           gacgTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCg                                                                                           >  2:7005056/1‑151 (MQ=255)
                                                             cgTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAg                                                                                         >  1:5925359/1‑151 (MQ=255)
                                                             cgTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAg                                                                                         >  1:5694639/1‑151 (MQ=255)
                                                               tGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGCTGCCGAggg                                                                                       <  1:4344931/151‑1 (MQ=255)
                                                                  cACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCAc                                                                                    >  1:1712489/1‑151 (MQ=255)
                                                                     tggtggTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCtt                                                                                 >  1:1402930/1‑151 (MQ=255)
                                                                         ggtCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCAcc                                                                             >  2:3426792/1‑151 (MQ=255)
                                                                          gtCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCg                                                                            >  1:2300126/1‑151 (MQ=255)
                                                                                      gggccGAGCGAACTGGTCGTCGCCGCGGGTGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTacac                                                                <  2:4965550/148‑1 (MQ=255)
                                                                                      aGCCCGAGCAATCTGGCCATCGATGCTGATGGCACCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatc                                                                >  2:2660736‑M2/1‑96 (MQ=255)
                                                                                          cGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGc                                                            <  1:6837186/151‑1 (MQ=255)
                                                                                           gAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGcc                                                           >  1:1053669/1‑151 (MQ=255)
                                                                                                aaCTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGc                                                      <  2:824890/151‑1 (MQ=255)
                                                                                                aaCTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGCTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCCTCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGc                                                      >  2:4550949/1‑151 (MQ=255)
                                                                                                     gtcgtcGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATg                                                 >  2:1253761/1‑151 (MQ=255)
                                                                                                       cgtcgCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCACTGGc                                               >  2:3579950/1‑151 (MQ=255)
                                                                                                       catcgatgctgatggcacCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggc                                               >  1:517988‑M2/8‑79 (MQ=255)
                                                                                                        gtcgCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCg                                              >  1:5303586/1‑151 (MQ=255)
                                                                                                        atcgatgctgatggcaCCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcg                                              <  1:2419979‑M2/145‑74 (MQ=255)
                                                                                                         tcgCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGa                                             >  2:6367559/1‑151 (MQ=255)
                                                                                                          cgccgcCGATGGCAGCAGCATCAGCGGTGCTGCTCCTGCTGGTAGCCGCGGGGAAGTGCATGATGCCAACGGCATGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACGGTGGTGCTTACACCGGCCCAGGCCGATGGCGAg                                            >  2:1343269/1‑151 (MQ=255)
                                                                                                            ccgccgATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGtt                                          >  1:413003/1‑151 (MQ=255)
                                                                                                            atgctgatggcACCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaact                                          >  1:1989689‑M2/6‑74 (MQ=255)
                                                                                                             tcctgatggCACCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactg                                         >  2:6860743‑M2/5‑73 (MQ=255)
                                                                                                             cgccgATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTg                                         <  1:3773717/151‑1 (MQ=255)
                                                                                                              gccgATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGc                                        >  1:5761968/1‑151 (MQ=255)
                                                                                                                tgaTGGCACCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctg                                      <  1:4500584‑M2/150‑82 (MQ=255)
                                                                                                                ggaTGGCACCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctg                                      >  2:466213‑M2/2‑70 (MQ=255)
                                                                                                                 gATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTgg                                     <  1:402691/151‑1 (MQ=255)
                                                                                                                  aTGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGa                                    >  1:3706771/1‑151 (MQ=255)
                                                                                                                  aTGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGa                                    <  2:6802650/151‑1 (MQ=255)
                                                                                                                   tGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGAc                                   <  1:3426979/151‑1 (MQ=255)
                                                                                                                   tGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGAc                                   <  1:2872604/151‑1 (MQ=255)
                                                                                                                   tGGCACCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggac                                   >  1:4970682‑M2/1‑67 (MQ=255)
                                                                                                                   tGGCACCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggac                                   >  1:6104023‑M2/1‑67 (MQ=255)
                                                                                                                   tGGCACCACCCTCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggac                                   >  2:1184482‑M2/1‑67 (MQ=255)
                                                                                                                    ggCAGCAGCATCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACg                                  >  2:1957053/1‑151 (MQ=255)
                                                                                                                       agcagcaTCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTtg                               <  1:1617230/151‑1 (MQ=255)
                                                                                                                       accaccctcaccggtACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtgg                               >  2:3290510‑M2/8‑63 (MQ=255)
                                                                                                                         cagcaTCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTtgtg                             >  2:2761167/1‑151 (MQ=255)
                                                                                                                         caccctcaccgGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtc                             >  1:3532531‑M2/6‑61 (MQ=255)
                                                                                                                          agcaTCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTgg                            <  2:5864619/151‑1 (MQ=255)
                                                                                                                          accctcaccGGTACCGCGCCTGCTGGCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcg                            >  1:6576969‑M2/5‑60 (MQ=255)
                                                                                                                           gcaTCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGc                           >  1:1869529/1‑151 (MQ=255)
                                                                                                                           gcaTCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGc                           >  1:234789/1‑151 (MQ=255)
                                                                                                                            caTCAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCg                          >  1:2563264/1‑151 (MQ=255)
                                                                                                                            caTCAGCGGTTCTGCTCCTGCTGGTAGCCGCGGGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCg                          <  2:4392054/151‑1 (MQ=255)
                                                                                                                              tCACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccat                        >  2:2786919‑M2/1‑56 (MQ=255)
                                                                                                                               cAGCGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCGATc                       >  1:7223193/1‑151 (MQ=255)
                                                                                                                               cACCGGTACCGCGCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatc                       >  2:6062252‑M2/1‑55 (MQ=255)
                                                                                                                                  cGGTTCTGCTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCGATCGac                    <  2:6278103/151‑1 (MQ=255)
                                                                                                                                    gtaccgcgcctgctGGCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatga                  >  2:4315460‑M2/6‑50 (MQ=255)
                                                                                                                                     taccgcgcctgctggcAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatccgacacaagccaacggcgaactgctggacgtggtcgccatcgatgac                 <  2:5582440‑M2/144‑103 (MQ=255)
                                                                                                                                     taccgcgcctgctggcAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgac                 <  2:1812430‑M2/144‑103 (MQ=255)
                                                                                                                                      accgcgcctgctggCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacg                >  1:3191457‑M2/7‑48 (MQ=255)
                                                                                                                                      accgcgcctgCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacg                >  2:5645105‑M2/4‑48 (MQ=255)
                                                                                                                                       cTGCTCCTGCTGGTACCCGCGTGGAAGCACATGATGCCAACGGCACGCCTGTCGGTAGCATCGTGGTGTGTGCCGATGGCTCCTTCACCGTGGTGCTTTCACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCGATCGAcaacaa               >  2:1687194/1‑151 (MQ=255)
                                                                                                                                        cgcgcctgctGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggc              >  1:6487252‑M2/5‑46 (MQ=255)
                                                                                                                                         gcgcctgcTGGCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcg             >  1:3413621‑M2/4‑45 (MQ=255)
                                                                                                                                         ccgcctgcTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcg             >  2:5722120‑M2/4‑45 (MQ=255)
                                                                                                                                          cTCCTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCGCTCGACAACAACgc            >  2:3940/1‑150 (MQ=255)
                                                                                                                                           gcctGCTGGCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagtcaacggcgaactgctggacgtggtcgccatcgatgtcggcggc           <  1:1504629‑M2/150‑109 (MQ=255)
                                                                                                                                           gcctGCTGGCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggc           >  1:2085523‑M2/2‑43 (MQ=255)
                                                                                                                                            ccTGCTGGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCGATCGACAACAACGGCa          <  1:6151789/151‑1 (MQ=255)
                                                                                                                                             ctgctgGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgt         >  1:3289214‑M2/1‑41 (MQ=255)
                                                                                                                                             ctgctgGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgt         <  2:3746293‑M2/151‑111 (MQ=255)
                                                                                                                                              tgctgGCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgtt        <  1:2190837‑M2/151‑112 (MQ=255)
                                                                                                                                              tgctgGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgtt        >  1:6927322‑M2/1‑40 (MQ=255)
                                                                                                                                               gctgGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgagtcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgttt       >  2:1417618‑M2/1‑39 (MQ=255)
                                                                                                                                                gtgGTAGCCGCGTGGAAGCGCATGGTGCCAACGGGACGCTGGTCGGTAGCATCGTGGTGGGGGCCGCGGGCACCTTCACCGTGGTGCTTACGCCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCGATCGACAACAACGGCACCtc      <  2:314111/150‑1 (MQ=255)
                                                                                                                                                 tgGTAGCCGCGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCGATCGACAACAACGGCACCtcg     >  1:482357/1‑151 (MQ=255)
                                                                                                                                                 tgGCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgtttcc     >  2:4738660‑M2/1‑37 (MQ=255)
                                                                                                                                                   gCAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgtttcctc   >  2:2265776‑M2/1‑35 (MQ=255)
                                                                                                                                                   gCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgtttcctc   >  2:2309373‑M2/1‑35 (MQ=255)
                                                                                                                                                   gCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgtttcctc   >  1:1286210‑M2/1‑35 (MQ=255)
                                                                                                                                                    cAGCCGTGTGGAGGTGCATGATGCCAACGGCACGttgattggcagtgccattgccaacgccgatggcagcttcagcatcgaactgaatcccgcacaagccaacggcgaactgctggacgtggtcgccatcgatgacggcggcgtttcctcc  <  2:5375995‑M2/151‑118 (MQ=255)
                                                                                                                                                    |                                                                                                                                                      
AACGCCTGAGCCTGGTACAGACCGACCAGAGCGGCAACGCCTCTGAAGTGCTGACCTACGACGTGCCACTGGTGGTCACCCCGACCAGCCCGAGCGAACTGGTCGTCGCCGCCGATGGCAGCAGCATCAGCGGTTCTGCTCCTGCTGGCAGCCGTGTGGAAGTGCATGATGCCAACGGCACGCTGGTCGGTAGCATCGTGGTGGGTGCCGAGGGCACCTTCACCGTGGTGCTTACACCGGCCCAGGCCAATGGCGAGTTGCTGGACGTTGTGGCGATCGACAACAACGGCACCTCGTCG  >  CP009974/1160631‑1160929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑