Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 25,728 G→A intergenic (+153/‑418) RPPX_00140 → / → RPPX_00145 MarR family transcriptional regulator/(2Fe‑2S)‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00997425,7280GA97.7% 1034.7 / ‑0.5 312intergenic (+153/‑418)RPPX_00140/RPPX_00145MarR family transcriptional regulator/(2Fe‑2S)‑binding protein
Reads supporting (aligned to +/- strand):  ref base G (3/4);  new base A (137/163);  total (145/167)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 322 total aligned reads displayed.

GTTGTGACTGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACC  >  CP009974/25581‑25875
                                                                                                                                                   |                                                                                                                                                   
 ttgtGACTGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCa                                                                                                                                                 <  2:6777798/151‑1 (MQ=255)
 ttgtGACTGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCa                                                                                                                                                 >  2:2818538/1‑151 (MQ=255)
  tgtgACTGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCaa                                                                                                                                                <  1:936064/151‑1 (MQ=255)
   gtgACTGGCGCGGTGGCGGTCACAGATACGCGGCGTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGCCACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAAt                                                                                                                                               <  2:4824816/151‑1 (MQ=37)
   gtgACTGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAAt                                                                                                                                               <  2:4599130/151‑1 (MQ=255)
      aCTGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAAtctc                                                                                                                                            >  2:1441453/1‑151 (MQ=255)
      aCTGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTGCACCCGCGAATGCGCGGGTGCTGCTCGGCAAtctc                                                                                                                                            >  1:3222679/1‑151 (MQ=38)
        tGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTcct                                                                                                                                          <  1:1635903/151‑2 (MQ=255)
        tGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTcct                                                                                                                                          <  1:5860966/151‑2 (MQ=255)
        tGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGGTCACCCGCGAATGGGCCGGTCCTGCTCGCCACTCTccc                                                                                                                                          >  2:7131352/1‑150 (MQ=255)
         gCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTcctc                                                                                                                                         <  2:493604/151‑3 (MQ=255)
            gcgGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCccg                                                                                                                                      <  2:1073840/151‑1 (MQ=255)
            gcgGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCccg                                                                                                                                      >  1:75315/1‑151 (MQ=255)
              ggTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCccgcc                                                                                                                                    >  1:6520557/1‑151 (MQ=255)
                tGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGt                                                                                                                                  <  1:429386/151‑1 (MQ=255)
                 ggCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGtt                                                                                                                                 <  1:1066383/151‑1 (MQ=255)
                  gCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTAGCCAATCTCCTCCCGCCGCTc                                                                                                                                >  2:5244989/1‑151 (MQ=255)
                   ccGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCa                                                                                                                               >  1:5593558/1‑151 (MQ=255)
                     gTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCAcc                                                                                                                             <  1:3691339/151‑1 (MQ=255)
                     gTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCAcc                                                                                                                             >  1:3872540/1‑151 (MQ=255)
                      tCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCg                                                                                                                            >  1:3405983/1‑151 (MQ=255)
                         caGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCCCGAATGGGCCGGTCCTGCTGGCCAATCTCCTCCCGCCGTTCACCgctc                                                                                                                         >  2:3078712/1‑148 (MQ=255)
                          aGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgc                                                                                                                        <  2:772045/151‑1 (MQ=255)
                             tACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgc                                                                                                                     <  1:881778/151‑1 (MQ=255)
                             tACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgc                                                                                                                     >  1:2545436/1‑151 (MQ=255)
                             caCGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCCCATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgc                                                                                                                     <  2:6179787/150‑1 (MQ=255)
                              aCGCGGCCTGAGAGAGCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGAGCCGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgcc                                                                                                                    <  2:6953555/151‑1 (MQ=25)
                                gcgGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgccgc                                                                                                                  <  2:4228493/151‑1 (MQ=255)
                                gcgGCCTGAGAAATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgccgc                                                                                                                  <  1:2113287/151‑1 (MQ=255)
                                  ggCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCa                                                                                                                <  2:3611602/151‑1 (MQ=255)
                                   gCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCAc                                                                                                               <  1:1291438/151‑1 (MQ=255)
                                     cTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCg                                                                                                             >  1:1000319/1‑151 (MQ=255)
                                     cTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCg                                                                                                             <  1:2197184/151‑1 (MQ=255)
                                      tGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGt                                                                                                            <  2:5944773/151‑1 (MQ=255)
                                        agagaTCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTAt                                                                                                          >  1:4119610/1‑151 (MQ=255)
                                         gagaTCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTAtt                                                                                                         <  1:6644067/151‑1 (MQ=255)
                                           gaTCAAGCACATCGCGAGCGAGCTCGCTCACATTGGGCACGCAGCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTTCTCCCGCCGTTCACCGTTGCCGCTGCCACCGTATTcg                                                                                                       <  2:3639732/151‑1 (MQ=21)
                                           gaTCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTcg                                                                                                       <  1:1599120/151‑1 (MQ=255)
                                           gaTCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTcg                                                                                                       >  1:4825471/1‑151 (MQ=255)
                                               aaGCACGTCGCGGGGAAGCTCGCTGACCTTGGACACGCATCGGTGGTTGGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGATCACCGTTACCGCCGCCACCGTATTCGCggg                                                                                                   <  1:1297597/151‑1 (MQ=11)
                                                aGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGt                                                                                                  <  2:3695124/151‑1 (MQ=255)
                                                aGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGt                                                                                                  <  2:6363478/151‑1 (MQ=255)
                                                   acaTCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCGATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTaca                                                                                               >  1:4206279/1‑149 (MQ=255)
                                                   acaTCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTaaa                                                                                               <  1:6587451/151‑1 (MQ=255)
                                                     aTCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAAcc                                                                                             >  2:469491/1‑151 (MQ=255)
                                                       cgcgAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAAcccc                                                                                           >  2:17954/1‑150 (MQ=255)
                                                           aGCAAGCTCGCTCACATTGGACACGCATCGGGGGTTGGCCACAGGCCGTCGTAGGAGCGGGCTCACCCGCGAATGGGCCGGCCCTGCTAGCCTACCCCCTCCCGCCGATCACCGCTGCCGCCGCCACCGAACGCGCGGGCGACCCCGCGcc                                                                                       >  2:1085644/1‑151 (MQ=14)
                                                             cAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                     <  1:5702063/151‑1 (MQ=255)
                                                              aaGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTac                                                                                    <  1:1708810/151‑1 (MQ=255)
                                                                gctcgctcACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTacac                                                                                  >  1:4443559/1‑151 (MQ=255)
                                                                   cgctgACGTTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACg                                                                               <  2:5763447/151‑1 (MQ=255)
                                                                   cgctcACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACg                                                                               >  1:6332638/1‑151 (MQ=255)
                                                                    gctcACATTGGCCACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGCGCCGGCCCTGCCAGCAAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCGCCGGATTCGCGCGCCAGCCCCCTCATacacccac                                                                              >  2:4089939/1‑147 (MQ=14)
                                                                       cacaTTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATc                                                                           <  2:2513459/151‑1 (MQ=255)
                                                                          aTTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGtt                                                                                                                          <  2:2144234/101‑1 (MQ=255)
                                                                          aTTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCggg                                                                        <  2:561074/151‑1 (MQ=255)
                                                                           ttGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCgggg                                                                       <  1:4065924/151‑1 (MQ=255)
                                                                            tGGACACGTCTCGGTGGTTGGCCCCCGCCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTTTTCGCGGGTAAACCCGCTCCTACACACGCATCggggg                                                                      <  2:1156350/151‑1 (MQ=14)
                                                                             ggACATGCATCGGTAGTAGGACGCAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGt                                                                     <  2:1669410/151‑1 (MQ=14)
                                                                                   gCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGtcggccc                                                               >  1:4836394/1‑145 (MQ=255)
                                                                                     aTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGcaca                                                             <  1:823121/151‑1 (MQ=255)
                                                                                     aTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGcaca                                                             >  1:142962/1‑151 (MQ=255)
                                                                                           ggtTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCcgt                                                       <  1:4549827/151‑1 (MQ=255)
                                                                                            gtTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCcgtc                                                      >  1:4418232/1‑151 (MQ=255)
                                                                                            gtTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGATAAACCCGCTCCTACACACGCATCGGGGGTCCGCCACGCGCcgtg                                                      >  2:5582179/1‑150 (MQ=14)
                                                                                             ttGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCcgtcg                                                     <  2:4443559/151‑1 (MQ=255)
                                                                                             ttGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCcgtcg                                                     <  2:2964723/151‑1 (MQ=255)
                                                                                                       ggcgacgtCGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCGAGCCGATCTCCTCCCGCCGTTCACCGTTGCCGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCggg                                           <  2:3222679/146‑1 (MQ=17)
                                                                                                       gCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTCAACCCGCTCCTACACACGCATCGGGGGTTCGCCCCAGCCCCGCGTACGCGCggg                                           >  2:7095085/1‑151 (MQ=14)
                                                                                                         cgtcgtAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCCCACGCCGTCGGAGGCGCgggcg                                         >  1:5295333/1‑149 (MQ=17)
                                                                                                          ttcgtAGGAGCGGGTTCACCCGCGAATGGGCCGGCCTTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTacacacatg                                                                             <  1:6427861/113‑4 (MQ=11)
                                                                                                            cgtAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTCCGGCACAGGCCGTGGGCGGAGCgggcgccc                                      >  2:855772/1‑146 (MQ=14)
                                                                                                               aGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCcg                                   <  2:1217638/151‑1 (MQ=255)
                                                                                                               aGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCcg                                   <  2:3368998/151‑1 (MQ=255)
                                                                                                                 gAGCGGGTTCACCCGGGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCcgcg                                 <  1:4721955/151‑1 (MQ=255)
                                                                                                                      ggTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCCCCCGCGAAAgg                            >  2:1983471/1‑151 (MQ=255)
                                                                                                                       gTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTGCACCCGCGAAAggg                           >  1:2388118/1‑151 (MQ=255)
                                                                                                                        gtcgcccGCGAATGGGCCGGTCCTGCTAGCCAATCGCCTCCCGCCGTTCACCGTTGCGGCCGCCACCGTATTCGCCGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggc                          <  2:6602951/147‑1 (MQ=17)
                                                                                                                          cACCCGGGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggccg                        <  1:3458442/151‑1 (MQ=255)
                                                                                                                           aCCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggccgg                       >  1:1106817/1‑151 (MQ=255)
                                                                                                                             cggcgAGTGGGCCGGTCCTGGTGGCCAGTCGCCTCCGGCCGGTCACCGTTGGCGCCGCCACCGTGGTCGCGGGTAGGCCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggccggcc                     <  2:3924294/149‑1 (MQ=17)
                                                                                                                               gcgAATGGGCCGGTCCTGCTAGCCGATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCct                   <  2:5056973/151‑1 (MQ=255)
                                                                                                                                 gAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGCTCACCCGCGAAAGGGCCGGCCctgc                 >  1:5491510/1‑151 (MQ=255)
                                                                                                                                   aTGGGCCGGTCCTGCTAGCCGATCTCCTCCCGCAGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTCAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCctgctg               <  1:609967/151‑1 (MQ=255)
                                                                                                                                    tGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTgg              >  1:7020162/1‑151 (MQ=255)
                                                                                                                                     gggCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCCCAGGCCGTCGTCGGCGCGGGCGCACCCGCGAAAGGGCCGCCCCTGCTGGc             >  2:2304022/1‑151 (MQ=17)
                                                                                                                                     gggCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGc             <  1:6947343/151‑1 (MQ=255)
                                                                                                                                      ggCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGcc            >  1:3839141/1‑151 (MQ=255)
                                                                                                                                         ggggccTGCTGGCCAATCTGCTCCCGCCGTTCACTGTTGCCGCCGCCACCGTCTTCGCGGGTAAACCCGCTCCTACACACGCATCGGTGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCCCCCGCGAAAGGGCCGGCCCTGCTGGCCAAt         <  2:6670110/147‑1 (MQ=14)
                                                                                                                                         cGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAt         <  1:2980239/151‑1 (MQ=255)
                                                                                                                                         cGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAt         <  1:3036599/151‑1 (MQ=255)
                                                                                                                                         cGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGCGCCGGCCCTGCTGCCCacc         >  1:5230066/1‑149 (MQ=17)
                                                                                                                                           gTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtct       >  1:4864336/1‑151 (MQ=255)
                                                                                                                                            tCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctc      >  1:3096987/1‑151 (MQ=255)
                                                                                                                                             ccTGCTAGCCCAGCTCCTCCCGCCGTGCACCGTTGCCGCCGCCACCGTAGTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGCCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTcc     <  1:1878659/151‑1 (MQ=14)
                                                                                                                                             ccTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACACGCCGTCGTCCGAGCGGGCTCACCCCCGAACGGGCCGGCCCCGCCGGCCaaccccc     >  2:1625027/1‑146 (MQ=17)
                                                                                                                                             ccTGCTAGCCAATCTCCTCCCGCCGTTCACCGTAGCCGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTcc     <  2:2595851/151‑1 (MQ=255)
                                                                                                                                              ctgctaGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCa    <  1:6221251/151‑1 (MQ=255)
                                                                                                                                               tgctaGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCCATCTCCAc   >  1:2037820/1‑151 (MQ=255)
                                                                                                                                                gctaGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCAcc  <  1:2679749/151‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GTTGTGACTGCCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACC  >  CP009974/25581‑25875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑