| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 2,910,161 | T→C | intergenic (+65/‑594) | gudD → / → RPPX_12965 | glucarate dehydratase/GABA permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 2,910,161 | 0 | T | C | 89.7% | 1135.5 / 90.8 | 431 | intergenic (+65/‑594) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base T (23/21); new base C (132/250); total (155/276) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.04e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 | |||||||||||
Only 100 of 463 total aligned reads displayed.
GGTGCGCGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCC > CP009974/2910013‑2910311 | gcgcGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAgg > 2:2055295/1‑151 (MQ=255) cgcgGGATGACTGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGGCCGCTCCTCCATCAACCGGTGGTGTCGTCCCACACCGTCGTAGGa > 1:3231362/1‑151 (MQ=255) gcgGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAg > 2:3933412/1‑151 (MQ=255) gggATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCg < 1:1773689/151‑1 (MQ=255) gggATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCg < 2:4638408/151‑1 (MQ=255) aCAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCa < 1:1209837/151‑1 (MQ=255) aGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCAcc > 1:1031791/1‑151 (MQ=255) aGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCAcc > 1:1645186/1‑151 (MQ=255) gTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCcgc > 1:6515349/1‑151 (MQ=255) ggCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGa < 1:2793287/151‑1 (MQ=255) cGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGCGCGGGTTCACCCGCGAAt > 2:3526079/1‑151 (MQ=255) aTGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAg > 1:6697582/1‑151 (MQ=255) tGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAgg > 2:3008607/1‑151 (MQ=255) gTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCgg > 2:4555794/1‑151 (MQ=255) tGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 2:4210984/151‑1 (MQ=255) aTTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc > 1:4317929/1‑151 (MQ=255) gggTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCa > 1:6970341/1‑151 (MQ=255) gTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 1:5119031/151‑1 (MQ=255) gTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 1:2525201/151‑1 (MQ=255) gTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCCCCCCAt > 2:3391858/1‑151 (MQ=255) ttGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATa < 2:5221630/151‑1 (MQ=255) tGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAc > 1:2224494/1‑151 (MQ=255) ggCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCGGCGGGCCTCTGCGCGGGCGGGCGCGCTCCTGCATCACCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcctc < 2:2910758/150‑3 (MQ=37) aGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcctc < 1:1451579/151‑3 (MQ=255) gCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcctcc < 2:1627746/151‑1 (MQ=255) cTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCa < 2:6456229/151‑1 (MQ=255) ttCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCa > 2:2547661/1‑113 (MQ=255) tCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGt < 1:3808401/151‑1 (MQ=255) tCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCGGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGt < 2:3752234/151‑1 (MQ=255) gATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCa < 1:3030280/151‑1 (MQ=255) tAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCAtt < 1:7243744/151‑1 (MQ=255) aaCAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTc < 1:5265947/151‑1 (MQ=255) aCAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCa > 1:4106917/1‑151 (MQ=255) aaaCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAcc < 1:3085448/151‑1 (MQ=255) aaCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAccg < 1:4441203/151‑1 (MQ=255) aaCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAGACCGCCGGGCATGCAccg > 2:6017170/1‑151 (MQ=37) aCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAccgc < 1:2039994/151‑1 (MQ=255) gCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACcgccgc < 1:2683715/151‑1 (MQ=255) cTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAc > 1:3720406/1‑151 (MQ=255) cTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAc > 1:2968881/1‑151 (MQ=255) gCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAcccg < 1:6908497/151‑3 (MQ=255) ggTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCAc < 1:5580007/151‑1 (MQ=255) gTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATGGCCCGGACCTGTCGCCCAATACCTCCAGTCATCCACCGCCGCACCCGCcccc > 2:560664/1‑151 (MQ=25) gTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCAcc < 2:3679763/151‑1 (MQ=255) gTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCAcc < 2:2449916/151‑1 (MQ=255) gTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCAt < 1:5487220/151‑1 (MQ=255) tGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATtc > 1:2610566/1‑151 (MQ=255) aGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATtcat > 1:3666909/1‑151 (MQ=255) ggCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATtcatc < 2:1533221/151‑1 (MQ=255) cGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCg < 1:6593529/151‑1 (MQ=255) cGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAAGCg > 2:5508422/1‑151 (MQ=255) gggCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCgg < 2:1855135/151‑1 (MQ=255) ggCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGc > 1:3391055/1‑151 (MQ=255) ctctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAcc < 1:183552/151‑1 (MQ=255) tCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccg < 1:6273109/148‑2 (MQ=255) cgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCa < 1:962881/151‑1 (MQ=25) cgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCa < 2:915571/151‑1 (MQ=255) gCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGCCGCCACGTAccg > 1:495082/1‑150 (MQ=21) gCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAcc > 2:6589963/1‑137 (MQ=255) ccGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGtt < 1:4035119/151‑1 (MQ=21) ccGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGtt < 2:6184771/151‑1 (MQ=21) ccGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGcc > 1:5723995/1‑113 (MQ=255) cGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTg < 2:6861458/151‑1 (MQ=21) gCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGc < 1:3866219/110‑1 (MQ=255) tCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCg > 1:940929/1‑126 (MQ=255) cATCAATCGGCCGCGTCGCCCCGCCCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCg < 2:3101344/151‑1 (MQ=18) cATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCg > 1:2905011/1‑151 (MQ=21) cATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCg < 1:1979953/151‑1 (MQ=21) tCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCggg < 2:1424327/151‑1 (MQ=21) cAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGcccc > 2:193580/1‑136 (MQ=21) ggcgccgtCGCCCCGCCCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCAcc < 2:4317905/145‑1 (MQ=21) gtggtgTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAccgc < 2:6958156/85‑1 (MQ=255) gtggtgTCGCCCCACACCGTCGTAAGAGCGGATTCACCCGCGAATAGGCCGGACCAGCAGCCCAATACCTCCAGTCATTAACAACCGCACACGCCACCGCATTCATCAATCGGAACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCAccc < 2:2670199/151‑1 (MQ=21) gtgtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCcgcg < 1:1349299/151‑1 (MQ=21) ggtCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCGGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGa < 2:4120963/150‑1 (MQ=18) tCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAAt < 1:5959337/151‑1 (MQ=21) cGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGGCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATa < 2:3324158/151‑1 (MQ=21) gccacgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAg > 1:5676474/8‑151 (MQ=21) gCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAcc < 1:5023520/83‑1 (MQ=255) gCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAcc > 2:5023520/1‑83 (MQ=255) cacgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 1:4555794/146‑1 (MQ=21) cacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGTCACGCCCCCCTGTAGGAGCGGGCTCACCCGCGGACAGGc > 2:1337497/5‑151 (MQ=17) acgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCCCTTGTAGAAGCGGGTTCACCCGCGCATAGGcc > 2:1832355/4‑151 (MQ=18) acgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGcc > 1:475914/4‑151 (MQ=18) cgccccGTCGGAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGGCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg < 1:6073019/147‑1 (MQ=25) gtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGcc > 2:3157624/3‑82 (MQ=255) gtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGcc > 2:7114255/3‑82 (MQ=255) gtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAtt < 1:2139202/88‑1 (MQ=255) gtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAtt > 2:2140350/3‑90 (MQ=255) ctgccGTCGTAGGAGTGCGTTCTCCGGCGAAGCGCGCGGACCTGCCGCCCAAGACCTCCAGTCATTCGCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 2:5319974/148‑1 (MQ=18) cacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCaa > 1:1008889/1‑51 (MQ=255) cacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAc < 2:6676423/54‑1 (MQ=255) ccccttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCCCGCACCCTTGGAGGAGCCGGCTCACCCGCGAATCAGCCGGAc > 2:2769690/5‑151 (MQ=21) cGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGtt > 2:1051751/1‑129 (MQ=255) gctGTAGGAGCCGCTTCACCCCCGACTAGGCCGGACCTGCGGCCCAATGCCCCCGGTGACTCCCCCGCGCGCCTGCCCCCGCATTCATCAACCGGCACCGTCGCCACGCACCCTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 2:7017809/149‑1 (MQ=21) gtgtgGGAGTGGGCTCACGCGAGAATAGGCCGGACCTGCAGGCCAATGCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAACCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 1:3507630/150‑1 (MQ=21) tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccg < 2:4811040/98‑2 (MQ=255) tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccg > 1:4811452/1‑97 (MQ=255) tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCCCTTGGAGGACCGGGCCCACCCGCGAAGCGGCCGGACCTgcc > 2:6509803/1‑151 (MQ=18) tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGcccc > 2:1766590/1‑110 (MQ=255) | GGTGCGCGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCC > CP009974/2910013‑2910311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |