| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,297,192 | T→G | T53P (ACC→CCC) | RPPX_14685 ← | AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,297,192 | 0 | T | G | 89.6% | 1192.6 / 153.3 | 368 | coding (157/921 nt) | RPPX_14685 | AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (161/167); minor base . (16/22); total (179/189) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.69e-01 | |||||||||||
Only 100 of 376 total aligned reads displayed.
TCGGGGCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGTGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGC > CP009974/3297044‑3297339 | ccGGGGCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑gggggg < 1:6066197/150‑1 (MQ=255) ggggCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑gggggggt < 1:5947905/151‑1 (MQ=255) gggCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTa < 1:3202831/151‑1 (MQ=255) cTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGGAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAg < 2:5552674/151‑1 (MQ=255) cTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑ggggggggtaca > 1:498428/1‑146 (MQ=255) cTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAg > 2:6177672/1‑151 (MQ=255) tGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGa > 1:3278249/1‑151 (MQ=255) tGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGGACAGa > 2:3500147/1‑151 (MQ=255) ggCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCAGGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTGTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGaa < 2:3269173/151‑1 (MQ=255) cATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACg < 1:5725450/151‑1 (MQ=255) ccAGCCTCACGGCACTGAGTGGCAAGGTCACCGAACCGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGcac > 2:3548399/1‑151 (MQ=255) ccAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGcac < 2:1355340/151‑1 (MQ=255) cAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGcaca > 1:166041/1‑151 (MQ=255) ccTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACAttt > 1:774350/1‑151 (MQ=255) cACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGCACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCg < 2:542177/151‑1 (MQ=255) cACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCgg < 2:4689465/151‑1 (MQ=255) cGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCGgtg < 1:3807453/151‑1 (MQ=255) gCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGgtgt < 2:2856477/151‑1 (MQ=255) cACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTa < 2:1641087/151‑1 (MQ=255) aCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTaa > 1:3652383/1‑151 (MQ=255) aCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTaa > 1:6806363/1‑151 (MQ=255) cTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAAc < 2:3253482/151‑1 (MQ=255) cTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAAc < 2:1211341/151‑1 (MQ=255) gAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGc > 1:3886215/1‑151 (MQ=255) gAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGc < 1:3082724/151‑1 (MQ=255) gAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGc < 2:7156474/151‑1 (MQ=255) aGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCa > 1:2708370/1‑151 (MQ=255) aGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCa > 1:6550272/1‑151 (MQ=255) tGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCAcc > 2:2802077/1‑151 (MQ=255) gCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCCGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAg > 2:5987793/1‑151 (MQ=255) gCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAg < 1:6260047/151‑1 (MQ=255) aaGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGt > 1:1998511/1‑151 (MQ=255) aGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTa < 1:2157466/151‑1 (MQ=255) aGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTAc < 2:2672261/151‑1 (MQ=255) gTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTa > 1:534142/1‑149 (MQ=255) gTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATACACAGGGCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAg > 2:6925644/1‑151 (MQ=255) cGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCa > 2:4433802/1‑151 (MQ=255) aCGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGa < 1:2764023/151‑1 (MQ=255) gACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATg > 2:153744/1‑151 (MQ=255) aCCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATgg < 2:1075606/151‑1 (MQ=255) ccATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATgg < 1:1185213/151‑1 (MQ=255) ccATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGc < 2:4585519/151‑1 (MQ=255) aTGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGa < 1:5567488/151‑1 (MQ=255) tgtggtGCGGTGGGTCGGGGGCGTACTGATCGGCACGCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAGCGCACCAGGTACAGGTCATCGATGGCCGa < 2:1373596/146‑1 (MQ=255) gTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAt > 2:2067842/1‑151 (MQ=255) gTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGATTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAt < 2:6332395/151‑1 (MQ=255) gCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTgg > 2:1896272/1‑151 (MQ=255) aGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGcc > 1:5863243/1‑151 (MQ=255) tGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCa < 1:6991861/151‑1 (MQ=255) ggggTCTTCGGCGTACTGCGCGGTCGCCAGGAGCAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATGTTCGGTGTCACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCa < 1:4088698/150‑1 (MQ=255) ggTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACACTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCaaa > 2:6387635/1‑151 (MQ=255) gTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAg < 2:845818/151‑1 (MQ=255) tCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAgg < 1:7153186/151‑1 (MQ=255) tCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAgg > 1:640722/1‑151 (MQ=255) gTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTTGGCAAGGATGCACAGGGCATGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCATGTACAGCCCATCGATGGCCAATGCTGGGCCAAAAGGc > 2:2281144/1‑151 (MQ=255) gTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGc > 2:1484063/1‑151 (MQ=255) ggCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCg < 1:5759004/151‑1 (MQ=255) cGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGcc < 1:5628292/151‑1 (MQ=255) gTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGccc > 1:4468863/1‑151 (MQ=255) aCTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGc < 2:399131/151‑1 (MQ=255) gCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATg > 2:3393191/1‑151 (MQ=255) cTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATgg < 1:3435252/151‑1 (MQ=255) tCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGt < 1:2880652/151‑1 (MQ=255) ccAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATc < 1:2062122/151‑1 (MQ=255) aaCAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACACTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCt < 2:4319661/151‑1 (MQ=255) cAGGCTTTGGCTGCCTTGCGCAAGGGTGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCg < 2:4253858/151‑1 (MQ=255) gttttGCTGCGTGGGGCAAGGGTGCACAGGGCAGGCTGCGACA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCa < 2:3136842/150‑1 (MQ=255) tgctgcCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGACCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTcc > 2:3009908/1‑151 (MQ=255) ctgcCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCa < 1:1837166/151‑1 (MQ=255) ctgcCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCa < 1:5163832/151‑1 (MQ=255) ccTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGgc > 1:3194728/1‑151 (MQ=255) ccTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGgc < 2:5794044/151‑1 (MQ=255) cTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGgcg > 2:5270106/1‑151 (MQ=255) ttGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGgcgc > 2:5088396/1‑151 (MQ=255) tGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCCGCTCGGCCAGCTCCAGGCGCt > 1:2436015/1‑151 (MQ=255) tGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCt > 2:896502/1‑151 (MQ=255) tGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTg > 1:282247/1‑151 (MQ=255) gggCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCCCGGCCAGCCCCACGCGCTg > 2:3624142/1‑151 (MQ=255) gCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCa > 2:2442048/1‑151 (MQ=255) gCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGCCGCCGCa > 2:6558483/1‑151 (MQ=255) cAAGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAg > 1:6305031/1‑151 (MQ=255) aaGGATGCACAGGGCAGGCTGCGCCAGGGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAg > 1:4348890/1‑151 (MQ=255) aaGGATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGt > 1:1300764/1‑151 (MQ=255) gATGCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTcc < 1:1437735/151‑1 (MQ=255) aTGCACAGGGCAGGCTGCGCCAGGGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTcc < 2:1266280/151‑1 (MQ=255) gCACAGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAgg < 1:1122808/151‑1 (MQ=255) gacaGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAggg < 2:3821964/150‑1 (MQ=255) cacaGGGCAGGCTGCGCCAGGGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAgg < 2:44040/151‑1 (MQ=255) cacaGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGGGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAggg < 2:7019950/151‑1 (MQ=255) acaGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAgggg > 2:6762043/1‑150 (MQ=255) acaGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGt > 1:4187718/1‑151 (MQ=255) aGGGCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcg < 1:5446311/151‑1 (MQ=255) ggCAGGCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggt < 1:4808223/151‑1 (MQ=255) ggCAGGCTGCGCCA‑GGG‑GGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggtt < 1:6191122/151‑1 (MQ=255) cAGGCTGCGCCA‑GGGGGGGTACCGAACGCAGATTTTCGGTCTAACGCACCAGGTACAGGTCATCGATGGCCGCTGCTGCGCCAAAGGGCTCGCCCGCACGGCGGTTGATCAGCTCGGCCAGCTCCAGCCGCTGCCGGTCCAGGGacggttc > 2:5772904/1‑151 (MQ=255) aGGCCGCGCGA‑GGGGGGGTACCGAACGGACAGTTTCGGGGTAACGCACCAGGTACAGGGCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggttcg < 2:5006003/151‑1 (MQ=255) ggCTGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGtcggttcgg > 2:5200173/1‑151 (MQ=255) tGCGCCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGCGCTCGCCCGCATGGCGGTTGATCAGCCCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTgg > 2:2021333/1‑151 (MQ=255) cgcCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGAc < 1:1026446/151‑1 (MQ=255) gcCA‑GGGGGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACg < 1:4656294/151‑1 (MQ=255) | TCGGGGCTGGCATCCAGCCTCACGGCACTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCTTGGGCAAGGATGCACAGGGCAGGCTGCGCCA‑GGGTGGGTACAGAACGCACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGGCCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGC > CP009974/3297044‑3297339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |