Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 3,673,509 C→T intergenic (+108/‑429) RPPX_16400 → / → RPPX_16405 glucose‑1‑phosphate thymidylyltransferase/beta‑ketoacyl synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099743,673,5090CT84.8% 1236.8 / 171.8 562intergenic (+108/‑429)RPPX_16400/RPPX_16405glucose‑1‑phosphate thymidylyltransferase/beta‑ketoacyl synthase
Reads supporting (aligned to +/- strand):  ref base C (41/44);  new base T (218/255);  total (259/303)
Fisher's exact test for biased strand distribution p-value = 7.25e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 602 total aligned reads displayed.

GCCAGTATCTGCTGCGTTTGATTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTCCCATCAGCCGTTCACCGTCGCCGCCGC  >  CP009974/3673361‑3673659
                                                                                                                                                    |                                                                                                                                                      
 ccAGTATCTGCTGCGTTTGATTCAAGGCACCGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGATTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTGGCCGGCGCTAcc                                                                                                                                                     >  2:4328584/1‑151 (MQ=255)
  cAGTATCTGCTGCGTTTGATTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCg                                                                                                                                                    <  2:2553039/151‑1 (MQ=255)
     tATCTGCTGCGTTTGATTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTAt                                                                                                                                                 >  1:393500/1‑151 (MQ=255)
            tgcGTTTGATTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCggg                                                                                                                                          <  1:4642540/151‑1 (MQ=255)
               gTTTGATTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTaa                                                                                                                                       <  1:4290285/151‑1 (MQ=255)
                tttGATTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTaaa                                                                                                                                      <  2:6334197/151‑1 (MQ=255)
                   gATTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAAccc                                                                                                                                   >  1:3102709/1‑151 (MQ=255)
                   gATTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAAccc                                                                                                                                   >  2:3315131/1‑151 (MQ=255)
                    aTTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGCAAACCCg                                                                                                                                  >  2:2786844/1‑151 (MQ=255)
                     ttCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGc                                                                                                                                 <  2:4925761/151‑1 (MQ=255)
                      tCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCt                                                                                                                                <  1:3606803/151‑1 (MQ=255)
                       cAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTc                                                                                                                               <  1:2531785/151‑1 (MQ=255)
                          ggCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                                                            >  1:384741/1‑151 (MQ=255)
                           gCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGATCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTac                                                                                                                           >  2:6580213/1‑151 (MQ=255)
                                gTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAgt                                                                                                                      >  2:685530/1‑150 (MQ=255)
                                 tttATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGAt                                                                                                                     <  1:5550168/151‑1 (MQ=255)
                                               aacCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCCCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCCCCCCTCCACCGATTGCTCGTGGacaca                                                                                                       >  2:5790508/1‑151 (MQ=21)
                                                   tCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTc                                                                                                   <  1:2294225/151‑1 (MQ=255)
                                                    cGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCg                                                                                                  <  2:2280806/151‑1 (MQ=255)
                                                     gggggggCGGCGCGGCCATTCCACGGGCGGTTCAACCCGCGAAGGGGCCGAGCCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCgg                                                                                                 <  2:1288321/148‑1 (MQ=17)
                                                     ggTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCgg                                                                                                 >  1:4099217/1‑151 (MQ=255)
                                                           gcggcgCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTg                                                                                           >  1:6934816/1‑151 (MQ=255)
                                                                gccgccATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGacac                                                                                      >  1:6558239/1‑151 (MQ=255)
                                                                 ccgccATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGAcaca                                                                                     <  2:403525/151‑1 (MQ=255)
                                                                         ccACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCcgtcg                                                                             <  1:2840815/151‑1 (MQ=255)
                                                                         ccACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCcgtcg                                                                             <  1:1879291/151‑1 (MQ=255)
                                                                           aCGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGCCACACCTCGGGGGCTGGACCCCGGCCGCCgtg                                                                           >  2:5000487/1‑151 (MQ=17)
                                                                              ggCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAg                                                                        <  1:6645305/151‑1 (MQ=255)
                                                                                cGGTTCAACCCGCGCAGGGACCGAGTCCTGCTGGCCAATTCCCACCCCCCGTTCACCGTCGCCGGCGCTAGCGTACTCGCGGGTACCCCCGCTCCTCCACAGATTGGTGGTGGACACACCTCGGGGGTTGGACCCAGGCCGTCGTGTAGGa                                                                      <  2:1172884/151‑1 (MQ=17)
                                                                                    tCAGCCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCgg                                                                  <  2:1434422/151‑1 (MQ=255)
                                                                                    tCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCgg                                                                  >  1:4915926/1‑151 (MQ=255)
                                                                                        ccccCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGttt                                                              <  1:835204/151‑1 (MQ=255)
                                                                                        cccGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGttt                                                              <  1:4011479/151‑1 (MQ=255)
                                                                                        cccGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGctt                                                              >  1:5236236/1‑151 (MQ=255)
                                                                                          cgcgAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTAc                                                            >  2:3392328/1‑151 (MQ=255)
                                                                                             gAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCcg                                                         >  1:1064870/1‑151 (MQ=255)
                                                                                             gAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCcg                                                         <  2:6147038/151‑1 (MQ=255)
                                                                                              aaGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCcgc                                                        >  1:3065692/1‑151 (MQ=255)
                                                                                                gggACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGa                                                      <  2:4582615/151‑1 (MQ=255)
                                                                                                 ggACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGCGGTGGACACACCTCGGGGGTTGGACACAGGCCATCGTGTAGGAGCTCGTGTACCCCCGaa                                                     >  2:5240671/1‑151 (MQ=14)
                                                                                                   aCCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAg                                                   <  2:3919548/151‑1 (MQ=255)
                                                                                                     cGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGTCACAGGCCGTCGTGTAGGAGCGGGTTATCCCGCGCACggg                                                 >  2:3729627/1‑151 (MQ=11)
                                                                                                     cGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAggg                                                 >  1:7146671/1‑151 (MQ=255)
                                                                                                       ggcccTGCTGGCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAAgggcc                                               <  1:3343140/148‑1 (MQ=11)
                                                                                                       aGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAgggcc                                               <  1:5936785/151‑1 (MQ=255)
                                                                                                        gcccTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCGCAGATGGGTTGTGGACACACACCGGAGGTTGGACGCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAAgggccg                                              >  1:1202045/3‑151 (MQ=11)
                                                                                                        gTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACAGCGGCCGTCGTGTAGGAGCGTGCTCACCCGCGACAggcccg                                              >  2:5532878/1‑151 (MQ=11)
                                                                                                        gTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGGGTACCCGCGACAgggccg                                              >  2:1743159/1‑151 (MQ=11)
                                                                                                         tCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAgggccgg                                             >  1:1526318/1‑151 (MQ=255)
                                                                                                          ccTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCGCAGATGGGTTGTGGACACACACCGGAGGTTGGACGCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAAgggccggc                                            <  1:1651723/151‑2 (MQ=11)
                                                                                                           ctgctgGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAgggccgggc                                           <  1:5100002/151‑1 (MQ=255)
                                                                                                            tgctgGCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAAgggccggccc                                          <  1:2688626/151‑1 (MQ=14)
                                                                                                             gctgGCCAATTTCCACCCGCCGGTCACTGTTGCCGCCGCGAGCGTATTCGCGGGTAAGCCCGCGCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCct                                         <  2:2146237/151‑1 (MQ=14)
                                                                                                             gcgggCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCct                                         <  1:4712605/148‑1 (MQ=14)
                                                                                                               tgGCCAATTTCCACCCGCCGTTCGCCGTTGCCGGCGCTACCGTGTTCGCGGGTAAACCCGCTCCTACACAGATTGGTGATGGACACACCTCGGGGGTTGGAAACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCctgc                                       <  2:3043109/151‑1 (MQ=14)
                                                                                                                ggCCAATTTCCACCAGCCATTCACTGTTGCTGCCGCCAACGTATTCGCGGGTAACCCCGCTCCTGCACAGATTGGTGGTGGACACGCATCGGTGGTTGGACACA‑GCCCAC‑TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTgg                                    <  1:912664/151‑1 (MQ=11)
                                                                                                                ggCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACATCGGGGGCTGGACACAGGCCGT‑‑TGTGGGGGCGGGCTTACACGCGCAAGGGGCGGGCctgcctg                                    >  1:1776111/1‑148 (MQ=11)
                                                                                                                 gCCAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCctgctg                                     <  1:6059977/151‑1 (MQ=14)
                                                                                                                 gCCAATTTCCACCCGCCCTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGATGGACACACATCGGTGGTTGGACACA‑GCCCAC‑TGTAGGAGCGGGTTTACCCGCGAAACGGCCGGCCCTGCTGGc                                   >  2:1953336/1‑151 (MQ=11)
                                                                                                                  ccAATTTCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTTGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTgg                                    <  1:6243555/151‑1 (MQ=11)
                                                                                                                   cAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGCAGACCCGCGAAAGGGCGCGGCCCCCTGGc                                   >  2:3258429/1‑151 (MQ=11)
                                                                                                                    aaTTTCCACCCGCCTTTCACTGTTGCCGCCGCTACCGTATTTGCGGGTAAACCGGGTCCTACGCAGATTGGTGGTGGACACACCACTGGGGTTGAACACAGGCCGTCGGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGcc                                  <  1:216533/151‑1 (MQ=14)
                                                                                                                     tttcccACCCGCCGTTCACCGTTGCCGGCGCTCCCGTTTTCGCGGGTAAACCCGCTCCTCCACAGATGGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCa                                 <  2:3507171/147‑1 (MQ=14)
                                                                                                                     aTTTCCACCAGCCATTCACTGTTGCTGCCGCCATCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACATCGGTGGTTGGACACAGCCC‑AC‑TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCagt                               >  1:7051566/1‑149 (MQ=1)
                                                                                                                      tttCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCaa                                >  1:6501167/1‑151 (MQ=255)
                                                                                                                      tttCCACCCGCCCTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGATGGACACACATCGGTGGTTGGACACA‑GCCCAC‑TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtt                              <  2:4752962/151‑1 (MQ=11)
                                                                                                                      tttCCACCCGCCCTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGATGGACACACATCGGTGGTTGGACACA‑GCCCAC‑TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtt                              <  1:4493285/151‑1 (MQ=11)
                                                                                                                       ttCCACCCGCCGTTCACTGTTGCCGGCGCTAGCGTATTTGCGGGTAACCCCGCGCCTACGCAGATTGGGGGTGGACACACCTGTGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAAt                               <  2:4644251/151‑1 (MQ=14)
                                                                                                                       tcccccccGCCGTTCCCTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAAt                               <  1:2137190/146‑1 (MQ=14)
                                                                                                                        tcgtgccgccgTTCACTGTTGCCGCCGCGACCGTATTCGGGGGTAACCCCGCGCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtt                              <  2:5626758/146‑1 (MQ=14)
                                                                                                                        tCCACCCGCCGTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACGTCGAGGGTTGGACACAGGCCGTCGTGTAGGAGCgg                                                                  >  1:6319717/1‑115 (MQ=11)
                                                                                                                        tCCACCAGCCATTCACTGTTGCTGCCGCCATCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACATCGGTGGTTGGACACA‑GCCCAC‑TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAGtttc                            >  1:6977235/1‑149 (MQ=11)
                                                                                                                          cACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCGCAGATGGGTTGTGGACACACACCGGAGGTTGGACGCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctc                            >  1:1012874/1‑148 (MQ=11)
                                                                                                                           aCCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCGCAGATGGGTTGTGGACACACACCGGAGGTTGGACGCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctcc                           >  1:3533401/1‑147 (MQ=11)
                                                                                                                           aCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACATCGGGGGCTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAAtctcc                           <  2:4127509/151‑5 (MQ=11)
                                                                                                                             ccgccgTTCACTGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCac                         <  1:5457761/151‑2 (MQ=14)
                                                                                                                             ccgccgTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCGCAGATGGGTTGTGGACACACACCGGAGGTTGGACGCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctccac                         <  1:680927/151‑7 (MQ=11)
                                                                                                                             ccgccgTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGTTCCTACACCGATTGGGGGTTGACACACATCGGGGGCTGGACACAGGCCGCCGTGTAGGCGCGGGTTTACCCGCGAAGCGGTCGGGCCTGCTGGACaaactccac                         >  1:2435312/1‑144 (MQ=11)
                                                                                                                              cgccgTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCGCAGATGGGTTGTGGACACACACCGGAGGTTGGACGCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctccacc                        >  2:2636142/1‑144 (MQ=11)
                                                                                                                               gccgTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCCCTCCTACACAGATTGGGGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTCTGGGAGCGGGGTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTcccctac                       >  1:3466254/1‑147 (MQ=17)
                                                                                                                                 cgTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGTTGGTGGACACACATCGGGGGCTGGACACAGGCCGCCGCGTAGGAGCGGGTGTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCAGc                     >  1:197230/1‑151 (MQ=11)
                                                                                                                                  gtgcACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCGCCAACTCAGATTGGAGGTGGACAAACATCGGGGGCTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCAGcc                    <  1:1339430/148‑1 (MQ=11)
                                                                                                                                  gTTCACTGTTGCCGCCGCTACCGTATTTGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCCGCTGGCCAAATCCCACCCGcc                    >  2:1593896/1‑151 (MQ=14)
                                                                                                                                  gTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTCCCATCCGcc                    >  2:2912971/1‑151 (MQ=255)
                                                                                                                                  gTTCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGCTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTCCCATCCGcc                    >  2:5094732/1‑151 (MQ=255)
                                                                                                                                   ttCACCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTCCCATCAGCCg                   >  1:3219905/1‑151 (MQ=255)
                                                                                                                                     cACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACATCGGGGGCTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCAGCCgcc                 >  2:5408139/1‑149 (MQ=11)
                                                                                                                                      actgTTGCCGCCGCTACCGTATTTGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTc                >  1:2339091/4‑151 (MQ=14)
                                                                                                                                      aCCGTTGCCGGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTCCCATCAGCCGTTc                >  1:4991911/1‑151 (MQ=255)
                                                                                                                                      aCCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCGCAGATGGGTTGTGGACACACACCGGAGGTTGGACGCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTc                >  2:7144577/1‑151 (MQ=11)
                                                                                                                                      aCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACATCGGGGGCGGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCAGCCGTTc                <  2:1672867/151‑1 (MQ=11)
                                                                                                                                       ctgTTGCCGCCGCTACCGTATTTGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCa               >  2:7015713/3‑151 (MQ=14)
                                                                                                                                       ccGTTGCCGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTACACAGATTGGTGATGGACACACATCGGTGGTTGGACACA‑GCCCAC‑TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCACCAGCCATTCAct             <  1:76327/151‑2 (MQ=11)
                                                                                                                                       ccGTTGCCGCAGCCACCGTAATCGCGGGAAAACCCGCTCCTACACAGATTGGTGGTGGACACACATCGGGGGCTGGACACAGGACGCCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCAGCCGTTCa               <  2:1994766/151‑1 (MQ=11)
                                                                                                                                          ttGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACATCGGGGGCTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCACCAGCCGTTCACCg            <  2:2413131/151‑1 (MQ=11)
                                                                                                                                           tGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCGCAGATGGGTTGTGGACACACACCGGAGGTTGGACGCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctcca                          <  1:2947676/136‑6 (MQ=11)
                                                                                                                                            gccgccgctACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGCCACAGGCCGCCGTGTAGGAGCGGGGTGACCCGCGAAAGGGCCGGCGCAGCTGGCCAATTTCCACCCGCCGTTCACTGtt          >  2:6021696/1‑150 (MQ=11)
                                                                                                                                             ccgccgctACCGTGTTCGCGGGTAAACCCGCGCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACTGttg         <  1:5724700/151‑3 (MQ=11)
                                                                                                                                               gccgccACCCTACTCGCGGGTAAGCCCGCTCCTACACAGAGTGGTGGTGCACACACACGGGGGGCTGGACACAGGCCCCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCTGCTGGCCAATCTCCACCAGCCGTTCACCGTtgcc       <  1:998425/151‑1 (MQ=11)
                                                                                                                                                 cgctACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCTGGGGTTGGACACAGGCCGCCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATTTCCACCCGCCGTTCACTGTtgccgc     >  1:5628934/1‑151 (MQ=11)
                                                                                                                                                    |                                                                                                                                                      
GCCAGTATCTGCTGCGTTTGATTCAAGGCACGGTTTATTGAGGCAACAACCTCGGTGGGGCGGCGCCGCCATTCCACGGGCGGTTCAACCCGCGAAGGGACCGAGTCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATTGGTGGTGGACACACCTCGGGGGTTGGACACAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTCCCATCAGCCGTTCACCGTCGCCGCCGC  >  CP009974/3673361‑3673659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑