Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 542,045 T→C intergenic (‑306/+223) argD ← / ← RPPX_02300 acetylornithine aminotransferase/AraC family transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009974542,0450TC95.8% 333.0 / 2.1 122intergenic (‑306/+223)argD/RPPX_02300acetylornithine aminotransferase/AraC family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (0/5);  new base C (5/110);  total (5/117)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 135 total aligned reads displayed.

TCGCGCAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTCCCTCCTGTGCCTGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCATGCGCCAAGGCGTTCGCGCGCAAATGCCACAGGCATAACTGGCCCGAAACAAACGTAGGAGCGGGTTTACCC  >  CP009974/541898‑542188
                                                                                                                                                   |                                                                                                                                               
tCGCGCAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttg                                                                                                                                              <  2:321857/151‑1 (MQ=255)
gcgcgCAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttg                                                                                                                                              <  2:1173677/150‑1 (MQ=255)
 cgcgCAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttgt                                                                                                                                             <  1:4794439/151‑1 (MQ=255)
  gcgcTGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttgtt                                                                                                                                            <  2:1873676/151‑1 (MQ=255)
  gcgcAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttgtt                                                                                                                                            >  1:5488545/1‑151 (MQ=255)
  gcgcAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttgtt                                                                                                                                            <  1:5812201/151‑1 (MQ=255)
  gcgcAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttgtt                                                                                                                                            <  1:6036762/151‑1 (MQ=255)
  gcgcAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttgtt                                                                                                                                            >  2:3546111/1‑151 (MQ=255)
  gcgcAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttgtt                                                                                                                                            >  2:241568/1‑151 (MQ=255)
   cgcAGTGTACGGGCGAGAGGGGGGCGGGGTGAGCGGGTGTTCACACAGGATTGCGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttgttt                                                                                                                                           <  2:6805158/151‑1 (MQ=255)
   cgcAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgcttgttt                                                                                                                                           <  2:1318037/151‑1 (MQ=255)
       gtgtACGGGGGCGGGGGGGGGCGGGTGAACGGGTGTTTACACAGGATTGTGGGGGGACAGGGTGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTGCGCGGGTTAACCCGCTGCTACGCGTGTTTCggg                                                                                                                                       <  2:942292/151‑1 (MQ=25)
       gggtACGGGAGGGGGGGTGGCTGGGGGAACGGGTGTTCGGGCAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGTGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCggg                                                                                                                                       <  2:942208/149‑1 (MQ=25)
        tgtACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGc                                                                                                                                      <  1:2346460/151‑1 (MQ=255)
         gtACGGGAGAGAGGGGGGCTGGGTGAGCGGGTGTTCACACAGGATTGTGAGGGGAGAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGcc                                                                                                                                     <  2:1412931/151‑1 (MQ=255)
          tACGGGAGAGGGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCa                                                                                                                                    <  1:6415804/151‑1 (MQ=255)
           aCGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAg                                                                                                                                   <  2:2028389/151‑1 (MQ=255)
             gggAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTc                                                                                                                                 <  2:1908973/151‑1 (MQ=255)
             gggAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTc                                                                                                                                 <  1:3130033/151‑1 (MQ=255)
             gggAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTc                                                                                                                                 <  1:6677321/151‑1 (MQ=255)
              ggAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTcc                                                                                                                                >  1:3551518/1‑151 (MQ=255)
               gagagaGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTccc                                                                                                                               <  1:294685/151‑1 (MQ=255)
               gagagaGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTccc                                                                                                                               <  1:294851/151‑1 (MQ=255)
                 gagagGGGTGGTGGGTGAGCGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCcctc                                                                                                                             <  2:5774541/151‑1 (MQ=255)
                 gagagGGGGGCTGGGTGAAGGGGTGTGCAGACAGGGTTGTGAGGGGACGGGGTGTACGGCGGTGTTGATGTGTTGGCGGGGCGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAATCCCGCTCCTACGCTTGTTTCGGGCCAGTCcctc                                                                                                                             <  2:5774599/151‑1 (MQ=25)
                 gagagGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCcctc                                                                                                                             <  1:535844/151‑1 (MQ=255)
                    gggggtgCTGGGTGAACGGGTGTTCACAGAGGATTGTGAGGGGACAGGATGGACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCGTCGCGGGTAACCCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCtg                                                                                                                          <  2:6889675/150‑1 (MQ=25)
                    agGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCtg                                                                                                                          >  1:1017017/1‑151 (MQ=255)
                     ggggggCTGGGTGAAGGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCtgc                                                                                                                         <  2:5250491/151‑2 (MQ=255)
                      gggggCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCtgcg                                                                                                                        <  2:5651058/151‑3 (MQ=255)
                      gggggCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCtgcg                                                                                                                        <  1:6172239/151‑3 (MQ=255)
                      gggggCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCtgcg                                                                                                                        <  1:2132220/151‑3 (MQ=255)
                         ggCTGGGTGATTGGGTGTTCACATAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGccc                                                                                                                     <  1:6237264/151‑2 (MQ=25)
                         ggCTGGGTGAACGGGTGTTCACACAGTATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGccc                                                                                                                     <  2:314834/151‑2 (MQ=255)
                          gCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGcccg                                                                                                                    <  1:1428753/151‑3 (MQ=255)
                            tGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGgc                                                                                                                  <  1:5313566/151‑1 (MQ=255)
                              ggTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGgcgc                                                                                                                <  1:4019654/151‑1 (MQ=255)
                              agtgagagggTGTTCACACAGGATTGTGAAGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGgcgc                                                                                                                <  2:1269349/144‑1 (MQ=21)
                               gggAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGgcgcg                                                                                                               <  2:2238436/149‑1 (MQ=255)
                               gTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGgcgcg                                                                                                               <  2:177563/151‑1 (MQ=255)
                                tGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGgcgcgc                                                                                                              <  1:5951651/151‑1 (MQ=255)
                                   aCGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGcgcgcgcg                                                                                                           <  2:1088980/151‑1 (MQ=255)
                                      ggTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGAcc                                                                                                        >  2:5422686/1‑151 (MQ=255)
                                      ggTGTTAACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGAcc                                                                                                        <  1:1171886/151‑1 (MQ=255)
                                        tgtTCAGTCAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGc                                                                                                      <  2:143995/151‑1 (MQ=21)
                                         gtTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGcc                                                                                                     >  1:3821330/1‑151 (MQ=255)
                                          ttCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCt                                                                                                    <  1:4630747/151‑1 (MQ=255)
                                           tCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCtt                                                                                                   <  2:5499860/151‑1 (MQ=255)
                                             acacaGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCttgt                                                                                                 <  2:3320572/151‑1 (MQ=255)
                                             acacaGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCttgt                                                                                                 <  1:6714161/151‑1 (MQ=255)
                                             acacaGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCttgt                                                                                                 <  1:7034262/151‑1 (MQ=255)
                                             acacaGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCttgt                                                                                                 <  1:7083111/151‑1 (MQ=255)
                                               acaGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCTGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCttgttt                                                                                               <  2:2316523/151‑1 (MQ=21)
                                                 aGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCttgtttgt                                                                                             <  1:4485957/151‑1 (MQ=255)
                                                  ggATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCttgtttgtt                                                                                            <  2:2745260/151‑2 (MQ=255)
                                                    aTTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTtcg                                                                                          <  2:1238847/151‑1 (MQ=255)
                                                      tgtgAGGGGGCAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGAACGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTtcgac                                                                                        <  1:441961/151‑1 (MQ=18)
                                                      tgtgAGGGGACAGGATGTACGGCGATGTTGCTGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTGAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTtcgac                                                                                        <  2:342798/151‑1 (MQ=18)
                                                      tgtgAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTtcgac                                                                                        <  1:5422686/151‑1 (MQ=255)
                                                      tgtgAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTtcgaa                                                                                        <  2:3818957/151‑2 (MQ=18)
                                                       gtgAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTtcgacg                                                                                       <  1:6540818/151‑1 (MQ=18)
                                                       gtgAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTtcgacg                                                                                       <  1:2779204/151‑1 (MQ=255)
                                                         gAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTtcgacggg                                                                                     <  2:5460709/151‑3 (MQ=18)
                                                           ggggACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGat                                                                                   <  1:3546111/151‑1 (MQ=18)
                                                              gACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATc                                                                                <  2:554464/151‑1 (MQ=18)
                                                               aCAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCGTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCg                                                                               <  1:2036391/151‑1 (MQ=17)
                                                               aCAGGATGTACCTCGATGTTGATGTGTTGGCGGCGAGATCGCGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGCGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCg                                                                               <  2:4655639/151‑1 (MQ=17)
                                                                cAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGa                                                                              <  1:1069381/151‑1 (MQ=17)
                                                                 aGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAg                                                                             <  1:5232143/151‑1 (MQ=17)
                                                                   gttGTACGGCGATGGTGAGGTGTTGGCGTGGAGTTCGAGCGGCGCCCGCGCGGCGCTTAGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCGCCTGGGCGCGGCGCGCGCGACCGCCTTGTTAGTTCGACGGGATATCGAggt                                                                           <  2:7072647/149‑2 (MQ=14)
                                                                    aTGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAggtg                                                                          <  1:3794605/151‑3 (MQ=17)
                                                                     tGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAggtgt                                                                         <  1:2149218/151‑4 (MQ=17)
                                                                      ttACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAggtgtg                                                                        <  2:5466513/150‑5 (MQ=17)
                                                                      gTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAggtgtg                                                                        <  1:1321669/151‑5 (MQ=17)
                                                                       tACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAACCCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAggtgtgc                                                                       <  2:2410269/151‑6 (MQ=17)
                                                                       tACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAggtgtgc                                                                       <  2:3551518/151‑6 (MQ=17)
                                                                        aCGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAggtgtgcg                                                                      <  2:5860870/151‑7 (MQ=17)
                                                                          ggCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGcc                                                                    <  1:4954256/151‑1 (MQ=14)
                                                                            cGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCaa                                                                  <  2:2089045/151‑1 (MQ=14)
                                                                             gATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAg                                                                 <  1:6580743/151‑1 (MQ=14)
                                                                               tGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGc                                                               <  1:3011126/151‑1 (MQ=14)
                                                                               tGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGc                                                               <  1:3011174/151‑1 (MQ=14)
                                                                               tGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGc                                                               <  1:3011199/151‑1 (MQ=14)
                                                                               tGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGc                                                               >  1:2261768/1‑151 (MQ=14)
                                                                                 ttGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGt                                                             <  2:4861246/151‑1 (MQ=14)
                                                                                 ttGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGt                                                             <  1:6663290/151‑1 (MQ=14)
                                                                                  tGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGtt                                                            <  1:3659380/151‑1 (MQ=14)
                                                                                   gATGTGTTGGCGGGGAGATCGCGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGTTc                                                           <  1:3542459/151‑1 (MQ=14)
                                                                                   gATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGTTc                                                           <  1:3052163/151‑1 (MQ=14)
                                                                                           ggCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAACCCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGTTCGCGCGCaa                                                   <  2:1744416/151‑1 (MQ=11)
                                                                                              ggggAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGTTCGCGCGCAAATg                                                <  1:7060496/151‑1 (MQ=11)
                                                                                                ggAGATCGCGCGCCGCCCGCGCGGCGCTTTGCGGGTAAACCCGCTCCTACGCTTGTTTGGGGCCAGGCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGAATATCGAGGTGTGCGCCAAGGCGTTCGCGCGCAAATGcc                                              <  2:6130069/151‑1 (MQ=11)
                                                                                                ggAGATCGAGGGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCACTCCTGCGCTTGTTACGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGTTCGCGCGCAAATGcc                                              <  2:3989485/151‑1 (MQ=11)
                                                                                                ggAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGTTCGCGCGCAAATGcc                                              <  1:725497/151‑1 (MQ=11)
                                                                                                                     gggggcTTCGCGGGTAACCGCGCTCCTGCGTTTGTGTCGGGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGACATGCGCCAAGGCGGTCGCGCGCAAATCCCACAGGAATAATTGGCCCGaaa                         <  2:2212689/147‑1 (MQ=1)
                                                                                                                            ccgcgattAAACCCGCTTCTACGTTTGTTTCGCGCCAGGCCCTCCTGTGCCTGACGCGCGCGACCGCCTTGTTGGTACGACGCAATAACGAGACAGGCACCAAGGCGTTCGCGCGCAAATCCCACAGGCATAATTGGCCCGAAACAAACGt                  <  1:2419452/144‑1 (MQ=1)
                                                                                                                                   tacaCCCGCTCCTACGCTTGTTTCGGGCCAGTCCCTCCTGCGCCCGGCGCGCGCGACCGCCTTGTTTGTTCGACGGGATATCGAGGTGTGCGCCAAGGCGTTCGCGCGCAAATGCCACAGGCATAACTGGCCCGAAACAAACGTAGGAGca           <  1:434248/148‑2 (MQ=1)
                                                                                                                                   gaagcccGCGCCGACGGGTGCTTCGGGCCAGTCCCTCCTGTGCCTGGCGCGCGCGGCCGCCTTGTTGGTACGACGCGATATCGAGACAGGCACCAAGGCGTTCGCGCGCGAATCCCACAGGCATAATTGGCCCGAAACAAACGTAGGAGCg           <  2:6272506/147‑1 (MQ=1)
                                                                                                                                          tcttcTACGTTTGTTTCGCGCCAGTCCCTCCTGTGCCTGGCGCGCGCGACCGCCTTGTTTGTTCGACGCGATATCGAGACAGGCACCATAGCGTTCGCGCGCGAATCCCACAGGCATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTAc    <  1:100914/147‑1 (MQ=1)
                                                                                                                                            gccgaCGTTTGTTGCGGGCCGGTCCCTCCTGTGCCGGGCGCGCGCGGCCGCCTTGTTTGTTCGACGCGATATCGAGACAGGCACCAAAGCGTTCGCGCGCGAATCCCACAGGCATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTAccc  <  2:6605068/147‑1 (MQ=1)
                                                                                                                                                   |                                                                                                                                               
TCGCGCAGTGTACGGGAGAGAGGGGGGCTGGGTGAACGGGTGTTCACACAGGATTGTGAGGGGACAGGATGTACGGCGATGTTGATGTGTTGGCGGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTCCCTCCTGTGCCTGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCATGCGCCAAGGCGTTCGCGCGCAAATGCCACAGGCATAACTGGCCCGAAACAAACGTAGGAGCGGGTTTACCC  >  CP009974/541898‑542188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑