| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,837,678 | C→T | intergenic (+229/‑322) | RPPX_17095 → / → RPPX_17100 | proteophosphoglycan precursor/cupin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,837,678 | 0 | C | T | 91.2% | 174.7 / 6.9 | 115 | intergenic (+229/‑322) | RPPX_17095/RPPX_17100 | proteophosphoglycan precursor/cupin |
| Reads supporting (aligned to +/- strand): ref base C (7/3); new base T (45/59); total (53/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 117 total aligned reads displayed.
GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGT‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGT > CP009974/3837528‑3837793 | gtTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGCGGCACACACGGCGGTAGGAGCGCGGGCACCCCCGAAAAGACCCGGCCAGCGGGCCAATTTCGCCCCGCGGTTCACCCCCgccgccgcc > 2:3874511/1‑151 (MQ=9) cACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGGCTGCGCGGTCCTCTGTAGGAGCGGGTGCACCCGCGCAAGGGCCGGGCCGGCCCGCCAATTGTCACCAGCCGGTCACCGGTGCGGCCGCCAccctc > 2:4534666/1‑148 (MQ=9) cACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGGTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCCGCCGCCCACCGTAGCTGCCGCCACCGTa > 2:667946/1‑151 (MQ=9) cACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAcc < 1:6081616/151‑1 (MQ=255) aCCGTTGGCGCCGCTACCGTATGCGCGGGTAAACCCGCTACTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCg < 2:592369/151‑1 (MQ=255) aCCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCg < 1:612182/151‑1 (MQ=255) ccATTGCCGCCGCTACTGTATTCGCGGGTCAACCCGCTCCTACACCCGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGt < 1:2724719/151‑1 (MQ=255) ccATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGt < 1:2724447/151‑1 (MQ=255) aTTGCCGCCGCTCCCGTATTCGCGGGTAAACCCGCTCCTACACACGCGTCGAGGGGGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAt < 1:4826913/151‑1 (MQ=255) aTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGCCGCACCGCCCGCTGTAGGAGCGGGGCCACCCCCGACCGGGCCGCGCCCCCCGGCCAATTACCACCCGCCGGACACCCGTGCCGCCGCTACAGtct > 2:6996364/1‑149 (MQ=2) aTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGCTGCCGCCGCCACCGtct > 2:6380148/1‑149 (MQ=255) gtGCCGCCGCTACCGGATTCGCGGCCAAACCCGCCCCTACACCCGCGGCGAGGGCGGCACAGGCCGTTGTCGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAtt < 2:3916097/150‑1 (MQ=11) tGCCGCCGCGACCGTACTCGCGTGTAAACCCGCTCCTACACACGCATCGAGTGCGGCAGAGGCCCTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 2:5785543/151‑1 (MQ=11) ggccgccGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 1:34977/150‑1 (MQ=37) cgccgccGCTAGCGTATTTGCGGTCAGACCCGCTGCTACGCTCGCAGCGTGGGCGGCACAGGCCGTTGTAGGGGCGGGTGCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 2:1564502/150‑1 (MQ=11) gccgccGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGATAACGTATTcg > 1:2212811/1‑151 (MQ=255) ccgccgCTGCCGTCGTGGCGGGCAAACCCGCTCCTGCACACGCGTCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTACACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTcgc < 2:2002286/151‑1 (MQ=11) ccgccgCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGCCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTcgc > 2:145255/1‑151 (MQ=255) ccgccgCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCGGGCCAATTTCGGCCCGCGGTTCACCCTTGCCCCCGCCACCGTATTcgc > 2:5429941/1‑151 (MQ=14) cgccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTtgcg > 1:4948163/1‑151 (MQ=255) cgccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCCCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCCCCGTTGCCGCCGCTCCCCTATTcgcc > 2:3825879/1‑150 (MQ=11) gccgcTACGGTACTCGCGGGTAAACCCGCTCCTACACCCGCGTCGAGGGCGGCACAGGCCGTTGTAGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCgg < 2:6240240/151‑1 (MQ=11) gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCgg < 1:6109592/151‑1 (MQ=38) gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCCCTACCGTATCcgccc > 2:1868589/1‑149 (MQ=255) gccgcGACCGGCTTCGCGGGTAGACCGGCCCCTACAGCCGCGTCGAGGGCGGCACAGGCCGTTGTAGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCgg < 2:4919572/151‑1 (MQ=11) gcgcgACCGTGTTCGCGGGTCACCCCGCGCCTACGCACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg < 2:5619905/150‑1 (MQ=11) gcgcTACGGTGTTCGCGGGTAAACCGGCTCCTACACACGCGTCGAGGGCGGCAGAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg < 2:1985851/150‑1 (MQ=11) ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg < 1:665868/151‑1 (MQ=37) ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg > 2:419778/1‑151 (MQ=37) ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TGC‑TC‑TGGCCTGCGCGGTCCTCTGTCGCAGCGGGTTCACCCCCGAAAGCGCCGGGCCTGCTCGCCCATTTTCACCAGCCGCTCCCCGTTGCTGCCGCCCCCGTATTCCCGGGCaa > 2:1690578/1‑151 (MQ=9) ccgcTACCGTATTCGCGGGTAAACCCGCTCCGCCTCCCGCATCGAGGGCGGCCCAGGCCGGGGTAGGAGCGGGTTCCCCCGCGAAAGGGCCGGGCCTGCCGGGCAATTTCCACCCGCCGTCCACCGTTGGCGCCGCGGCCGTATGTGCggg > 2:1662855/1‑151 (MQ=14) cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt > 1:3150660/1‑151 (MQ=38) cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt > 1:3437865/1‑151 (MQ=38) cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt > 1:3739869/1‑151 (MQ=38) cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTCGAAGGAGCGGGTTCACCCGCGAGAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGCTCCCCGTTGCCGCCGCTACCGTCTTCGCGGGt > 1:3739848/1‑151 (MQ=11) cTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaa > 2:352510/1‑151 (MQ=25) cTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGCaa > 1:2066109/1‑151 (MQ=25) cGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAccc > 1:6029902/1‑151 (MQ=25) cGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAccc < 1:1134982/151‑1 (MQ=25) gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg > 1:2264430/1‑151 (MQ=21) gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg > 1:2048370/1‑151 (MQ=21) gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg < 1:3808026/151‑1 (MQ=25) tCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc < 1:6691975/151‑1 (MQ=18) tCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc > 1:703470/1‑151 (MQ=25) gcgcgGGTAGACCCGCTGCTACACCCGGAGCGAGGGCGGCACAGGCCGTTGTAGGGGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc < 2:5782163/150‑1 (MQ=11) gcgcgGGTAGACCCGCGCCTACGCGCGCGGCGGGGGCGGCAGAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc < 2:2930639/150‑1 (MQ=11) ccgcgGGTAGACCCGATCGTACACAGGAATCGAAGGCGGAGCAGGCCGTTGTCGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc < 1:5166651/150‑1 (MQ=11) ggcgGGTAAACCCGCTCCTACACCCGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCt < 1:6354057/150‑1 (MQ=25) cgcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAACCCCGccccc > 2:7228749/1‑150 (MQ=255) cgcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTccc > 2:3277168/1‑150 (MQ=25) cgcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGGAAACCCGCTCCt > 2:6332381/1‑151 (MQ=21) gtgggTAGACCCGCTGCGACACACGCGTCGGGGGCGGCACAGGCCGTTGTCGGAGCGGGTACACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtg < 2:5074338/149‑2 (MQ=11) gcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGAGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTGGCCGCGGCTACCGTATTCGCGGGTAAACGCGCTCCtg > 2:5664017/1‑150 (MQ=11) ggggTAAACCCGCTCCTGCGCCGGCATCGTGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtgc < 1:4941941/150‑3 (MQ=11) gggTCAACCCGCCCCTACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgca < 1:6469116/151‑1 (MQ=11) gTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTCAACCCGCTcccgcacc > 2:6771479/1‑145 (MQ=255) tAAACCGGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac < 1:7122654/151‑1 (MQ=255) tAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac > 2:6371442/1‑151 (MQ=18) tAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac > 1:1069935/1‑151 (MQ=17) agcccGCACCTACAAACGCATCAAGGGCGGCAAAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCCCCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGc < 1:997845/149‑1 (MQ=11) aaCCCGCTCCTGCGCACGCGGCGAGGGCGGCACAGGACGTTGTAGGAGCGGGCTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGc < 2:6379938/151‑1 (MQ=11) cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTACACCCGCTCCTGCCCACGCATcc > 2:3661188/1‑150 (MQ=255) cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCCTCg > 2:3943138/1‑151 (MQ=12) cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCg > 1:5966978/1‑151 (MQ=12) cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCACCg > 2:3100928/1‑151 (MQ=12) tcatACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggtg < 1:2709785/148‑4 (MQ=11) tACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTCCACACGCATCggtggtt > 2:3999330/1‑145 (MQ=9) tgcACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTGCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAgggccgggc < 2:4541906/149‑1 (MQ=2) ccccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATCCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctg < 1:1533915/150‑1 (MQ=2) cccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgc < 1:954749/151‑1 (MQ=2) ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 2:2466324/151‑1 (MQ=11) ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 2:6350226/151‑1 (MQ=2) ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 1:5036672/151‑1 (MQ=2) ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTCCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 2:2319301/151‑1 (MQ=2) cgcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 1:4872579/151‑1 (MQ=2) cgcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCATACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 2:310282/151‑1 (MQ=2) gcgAAAGGGCCGGGCCTGCTGGCCAGTGTTCACCGGCCGCGCACCGTTGCTGCCGCCACCGGATTCGCGGGTAAACCCGCTCCGACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTgg < 2:4764041/151‑1 (MQ=2) gcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTgg < 2:422535/151‑1 (MQ=2) gAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGcc > 1:5310161/1‑151 (MQ=2) aaaGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCa > 1:6613035/1‑151 (MQ=2) aaaGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCa < 1:4193960/151‑1 (MQ=2) gggccgggccTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtt > 1:3268388/1‑150 (MQ=2) ggccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATGCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttt < 2:1822290/151‑3 (MQ=2) gcggggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtttt < 1:5417885/148‑4 (MQ=2) gccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtttt < 2:4483641/151‑4 (MQ=2) cggggcgTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTAC‑CCTG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttc < 2:6737841/149‑5 (MQ=2) cgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGC‑GGTCGTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCACTCTTCa > 1:4679083/1‑151 (MQ=2) gggccTGCTGGCCAGTTTTCACCGGCCGTTCACCGTTGCTGCCGCTACCGTATCCGCGGGTGGCGCCGCGCCTACAC‑TGC‑TCG‑GGAGTGCGCGGGCCGC‑TGTAGGGGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAc < 2:3039169/151‑1 (MQ=2) ggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAcc > 1:6179779/1‑151 (MQ=2) ggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAcc < 2:3395752/151‑1 (MQ=2) gccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccc > 1:5171361/1‑151 (MQ=2) ccTGCTGGCCAATTTTCACCAGCCGTGCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccag < 2:3813885/151‑3 (MQ=2) ccTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccag > 1:3541201/1‑149 (MQ=2) tgctgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TGC‑TC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCCATTTTCAccagcc > 1:2231078/1‑147 (MQ=2) tgctgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagcc > 1:3376517/1‑147 (MQ=2) gctgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccg > 1:3731712/1‑146 (MQ=2) ctgGCCAATGTCCACCAGCCGTCCACCGTTGCTGCCGCCCCCGTAGTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccgc < 1:5190233/151‑7 (MQ=2) gCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtttt > 2:1051431/1‑135 (MQ=2) gCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtttt < 1:1051431/138‑4 (MQ=2) ctgccgccACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTgg < 1:4090654/100‑1 (MQ=2) | GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGT‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGT > CP009974/3837528‑3837793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |