| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,844,127 | C→T | intergenic (+345/‑1) | RPPX_17120 → / → RPPX_17125 | glutamyl‑tRNA synthetase/tRNA‑Ala |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,844,127 | 0 | C | T | 99.1% | 804.1 / NA | 221 | intergenic (+345/‑1) | RPPX_17120/RPPX_17125 | glutamyl‑tRNA synthetase/tRNA‑Ala |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (112/106); total (112/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 250 total aligned reads displayed.
GATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCC > CP009974/3843979‑3844277 | aTTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTggg > 2:1779650/1‑151 (MQ=255) tGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGc > 2:521541/1‑151 (MQ=255) tGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGAGCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGTGCCAGGCACCCAGCCAGCGATTCAGGTCAAAGCTACAGTGTGGGGc > 2:4484151/1‑151 (MQ=255) ttATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCta > 1:7234873/1‑151 (MQ=255) tATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAGTATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtat < 2:6930903/151‑1 (MQ=255) tATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtat > 1:4420037/1‑151 (MQ=255) tATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtat < 2:4073822/151‑1 (MQ=255) tATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtat < 2:3269943/151‑1 (MQ=255) aTCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtata > 1:1275061/1‑151 (MQ=255) aTCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCtata > 2:3188264/1‑151 (MQ=255) cTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGc < 1:5898798/151‑1 (MQ=255) atgtgAAAAAATTTTTAATTATTTTAGAAAATTAGTTAGACAGCCCTGCAATACGATCTTAATATGCGCCCAGTCCACAGAGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGc < 2:2946966/150‑1 (MQ=255) aaaaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGc < 1:1085559/151‑1 (MQ=255) aaaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCt > 2:3582121/1‑151 (MQ=255) aaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTg < 1:456531/151‑1 (MQ=255) aaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTg < 1:4852357/151‑1 (MQ=255) aaaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTg > 2:1518090/1‑151 (MQ=255) aaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTgg > 2:2655269/1‑151 (MQ=255) aaaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTgg < 2:2412039/151‑1 (MQ=255) aaTTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTggg > 1:1163398/1‑151 (MQ=255) tttttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGgag > 2:2605100/1‑151 (MQ=255) ttttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGgaga < 2:2730876/151‑1 (MQ=255) ttttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGgaga < 2:6199106/151‑1 (MQ=255) tttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGagag < 1:5643126/151‑1 (MQ=255) tttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGagag < 2:1643130/151‑1 (MQ=255) ttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgc < 1:1888346/151‑1 (MQ=255) ttGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGCTCAAAGCTACATTGTGCGGCTATAGCTCAGCCGGGAGAgc > 2:6529095/1‑151 (MQ=255) gAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAgcgc > 2:1929943/1‑151 (MQ=255) atatTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCt > 1:6578616/1‑151 (MQ=255) atTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgc > 1:6957091/1‑151 (MQ=255) atTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgc > 1:6177001/1‑151 (MQ=255) ttttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcat < 2:856827/151‑1 (MQ=255) ttttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcat < 1:40516/151‑1 (MQ=255) tttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatg > 1:838764/1‑151 (MQ=255) ttGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatgg < 2:1287064/151‑1 (MQ=255) tGAAAATTAGTTTGCCAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCTATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTTAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggc < 1:6069096/151‑1 (MQ=255) gAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggca < 1:6271693/151‑1 (MQ=255) gAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggca < 1:6688530/151‑1 (MQ=255) gAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggca < 2:2498615/151‑1 (MQ=255) aaaaaTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTgcatggca < 2:432550/150‑1 (MQ=255) aTTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCa > 1:2670575/1‑151 (MQ=255) aGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCagga > 2:750940/1‑151 (MQ=255) gTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCaggag > 1:2599294/1‑151 (MQ=255) ctttGACCGCCCGTCAATCCGATCCTAGTCCCCTCGCCGGCCACAGCGATGCACGAAAACGCAGCGCCTTACACCCAGCCACCGATACAGTTCAACGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCaggag < 1:6528987/150‑1 (MQ=255) tctGACAGCCCTGGCATGCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGAGTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCaggagg < 2:3855712/149‑1 (MQ=255) gACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCa > 1:3855712/1‑151 (MQ=255) aCAGCCCTGCAATCCAATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAg < 1:3202461/151‑1 (MQ=255) gaGCCCTGCAATCCTGTCTCAATGTGCGCCCCGGCCACAGAGATGAACGAACTCGAAGCGCCAGGCACCTAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGc < 2:7228112/150‑1 (MQ=38) cccTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGt < 1:5182992/151‑1 (MQ=255) cccTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGt > 1:5774372/1‑151 (MQ=255) ccTGTAATCCGAGCTTAATGGGCGCCCCGGCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGAGTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGtt < 1:4154762/151‑1 (MQ=38) ccTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGACAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGtt < 2:6344698/151‑1 (MQ=255) cTGCAATCCGATCTTAATCTGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTc < 2:200432/151‑1 (MQ=255) cagtCCGATCTTAATAGGCGCCCGGTCCACAGCGATGAACGAAAACGAAGGGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGAt < 2:6720032/148‑1 (MQ=38) cAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGAt > 1:4946932/1‑151 (MQ=255) aaTCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATc > 1:6869603/1‑151 (MQ=255) tCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATccc < 1:786658/151‑1 (MQ=255) ccGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCg < 1:2015851/151‑1 (MQ=255) cGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGc > 2:5502019/1‑151 (MQ=255) cGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGc < 1:4752657/151‑1 (MQ=255) gATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCt > 2:3834697/1‑151 (MQ=255) tCTTCATAGGCGCCCCGTCCACAGGGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTa < 2:6661318/151‑1 (MQ=255) tCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTa < 1:5448770/151‑1 (MQ=255) tttAATAGGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAg < 2:6850270/150‑1 (MQ=255) aaTATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTc > 1:135586/1‑151 (MQ=255) aaTATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCATAGCTc > 1:160339/1‑151 (MQ=255) aaTATGCGCCCCGACCACAACAATCAACGAAAACGAAGCGCCAGACACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGAAGAGCGCCTCCATCGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTc < 2:4012083/151‑1 (MQ=37) atGCGCCCCGGCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTccac < 2:3493041/151‑1 (MQ=255) cgcCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCaa > 1:3937821/1‑151 (MQ=255) cgcCACGTCCACAGGGGTGAACGAAAACGCAGAGCCAGGCACCCTGCCAGGGATTCAGGTGAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCaa < 2:135586/151‑1 (MQ=25) ccccGTCCACAGCGATTAACGAAAACGAAGCGGCAGGCACCCAGCCAGCGATTCAGTTGAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCaaat < 1:6978504/151‑3 (MQ=255) ccggcccACAGCGAGGGACGGTAACGAAGAACCGGGCTCCCAGCGTGCGATGGAGGTGAAAGCAACAGTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAttt < 2:1420196/146‑1 (MQ=18) cccGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAttt < 2:3937821/151‑1 (MQ=255) ccGTCAACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattc < 2:1091114/151‑2 (MQ=255) cGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAgttcc > 1:3475144/1‑149 (MQ=255) cGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAatttc > 1:5450997/1‑150 (MQ=255) gTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCaaattccg < 2:4638060/151‑7 (MQ=255) gTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccg < 2:3349999/151‑4 (MQ=255) gTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAattccg > 2:3006916/1‑148 (MQ=255) tCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCaaattccgc > 2:5385290/1‑144 (MQ=255) tCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGcc < 2:5767641/151‑1 (MQ=255) cacaGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTCGcctt > 1:2999570/1‑149 (MQ=255) gaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTcca < 1:1033857/125‑1 (MQ=255) gaaaacgaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTcca > 2:1033857/1‑125 (MQ=255) gaaGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCg > 2:4569287/1‑151 (MQ=255) gCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGt < 2:6489218/151‑1 (MQ=255) cGATTCAGTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATccc > 1:5309122/1‑86 (MQ=255) gTTCAAAGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGt < 2:785837/151‑1 (MQ=255) aaaGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGc > 2:2190629/1‑53 (MQ=255) aaGCTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCt < 2:596663/151‑1 (MQ=255) cTACATTGTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGt > 1:92595/1‑143 (MQ=255) tttgtttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCCTTTCTGCTAGGGTTCACGCATGTGGGTCTTCGCGCAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGa < 2:5195951/144‑1 (MQ=18) tttgtttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGa > 1:3350956/8‑151 (MQ=18) aaaaatccGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGa < 2:2767695/144‑1 (MQ=21) tgtttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGaca > 2:2204689/6‑151 (MQ=21) gtttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGacac > 2:4798086/5‑151 (MQ=21) atccGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACAcc < 1:1754598/148‑1 (MQ=255) atccGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACAcc > 1:2246285/4‑151 (MQ=255) ttcGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCATTTCTGCCAGGGTTCACGCAAGTGGATCTTCGCGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCg > 2:3231234/3‑151 (MQ=21) tccGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCg < 1:4623626/149‑1 (MQ=255) | GATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGATCTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGAAGCGCCAGGCACCCAGCCAGCGATTCAGTTCAAAGCTACATTGCGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAATTTTGCCGCGGTTCGCGTTAGCGGATCGGCACGAAGGTTACGTCCCCTTCGTCTAGTGGCCTAGGACACCGCC > CP009974/3843979‑3844277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |