| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 4,147,204 | A→G | intergenic (+456/‑565) | RPPX_18425 → / → RPPX_18430 | enoyl‑CoA hydratase/conjugal transfer protein TraR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 4,147,204 | 0 | A | G | 98.7% | 128.4 / NA | 79 | intergenic (+456/‑565) | RPPX_18425/RPPX_18430 | enoyl‑CoA hydratase/conjugal transfer protein TraR |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (33/45); minor base T (1/0); total (34/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.30e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTC > CP009974/4147064‑4147246 | tAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCgcgc < 2:3162385/151‑1 (MQ=11) aaGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCa > 2:5633434/1‑151 (MQ=11) aaGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCa < 1:4093630/151‑1 (MQ=11) aaGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCa > 1:2961362/1‑151 (MQ=11) aGGGCGAAAAGGGGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCag < 1:910711/151‑2 (MQ=11) gggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCagg < 2:3118140/151‑3 (MQ=11) ggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGt > 2:1362122/1‑151 (MQ=11) ggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGt > 1:3114477/1‑151 (MQ=11) ggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGt < 2:5129007/151‑1 (MQ=11) ggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGt < 2:1937474/151‑1 (MQ=11) ggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGt < 1:6714052/151‑1 (MQ=11) ggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGt < 1:5842868/151‑1 (MQ=11) gCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTg < 1:5055703/151‑1 (MQ=11) ggAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTgg < 2:572734/150‑1 (MQ=11) cGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTgg < 2:1611035/151‑1 (MQ=11) gAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGgc < 2:5151044/151‑1 (MQ=11) gAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGgc > 2:2456479/1‑151 (MQ=11) gAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGgc < 1:579043/151‑1 (MQ=11) aaaaGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGgcg < 1:2278394/151‑1 (MQ=11) aaaaGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGgcg < 1:2278108/151‑1 (MQ=11) aaaGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGgcgc > 1:5857169/1‑151 (MQ=11) aaGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCa < 2:3019376/151‑1 (MQ=11) aaGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCa < 1:3945938/151‑1 (MQ=11) aGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCAt > 2:6098041/1‑151 (MQ=11) aGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCAt < 2:6224217/151‑1 (MQ=11) aGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCAt < 1:6893248/151‑1 (MQ=11) ggTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATa < 2:5256904/151‑1 (MQ=11) tGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGt < 2:1538804/151‑1 (MQ=11) gAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTc < 2:2378648/151‑1 (MQ=11) gAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTc < 2:3662464/151‑1 (MQ=11) cAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTTACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCt > 2:4780773/1‑151 (MQ=11) cAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCt > 2:3419963/1‑151 (MQ=11) aGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGCGGCGCATAGTCACCtt > 2:4822496/1‑151 (MQ=11) gcgcCGGCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCCCCttt < 2:7166930/151‑1 (MQ=11) gCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCttt < 2:2678919/151‑1 (MQ=11) gCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCttt < 1:2587751/151‑1 (MQ=11) cGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACTGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTc > 1:4584734/1‑151 (MQ=11) cGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTc > 2:3660685/1‑151 (MQ=11) cGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTc > 2:858031/1‑151 (MQ=11) cGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTc < 1:5708947/151‑1 (MQ=11) cGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTc < 1:536192/151‑1 (MQ=11) cGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTc > 1:433390/1‑151 (MQ=11) gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCTCAGGCGGCGCATAGTCATCTTTcc > 2:4254189/1‑151 (MQ=11) gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc < 1:3677014/151‑1 (MQ=11) gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc > 2:4254280/1‑151 (MQ=11) gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc < 2:1972522/151‑1 (MQ=11) gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc > 2:4031351/1‑151 (MQ=11) gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc > 2:4031350/1‑151 (MQ=11) tCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCg < 2:2694026/151‑1 (MQ=11) tCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCg < 2:669843/151‑1 (MQ=11) cGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGc < 2:1486782/151‑1 (MQ=11) gCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGcc < 1:550565/151‑1 (MQ=11) ccATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGccc > 1:4220894/1‑151 (MQ=11) ccATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGccc > 1:6974384/1‑151 (MQ=11) cATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCt > 2:1686898/1‑151 (MQ=11) aTCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCtt < 2:3282704/151‑1 (MQ=11) aTCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCtt < 2:4807653/151‑1 (MQ=11) aTCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCtt < 2:3830703/151‑1 (MQ=11) aTCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCtt < 1:3819241/151‑1 (MQ=11) aTCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCtt < 2:3133478/151‑1 (MQ=11) tCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTa > 1:4667032/1‑151 (MQ=11) tCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTa > 2:187983/1‑151 (MQ=11) tCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTa > 1:3049261/1‑151 (MQ=11) cGCAAATGGACTGTTCACTGAGCCAAAACAGGCGAGTCC‑‑‑‑‑‑‑GCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCCTG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAc < 2:5667140/151‑1 (MQ=11) cGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAc < 2:772871/151‑1 (MQ=11) gCAAATGGACTGTTCACTGAGCCAAAACAGACTAGTTC‑‑‑‑‑‑‑GCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TGCTTCTTTCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCTCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAct > 1:3320568/1‑150 (MQ=11) gCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcg > 1:3760411/1‑151 (MQ=11) gCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcg > 2:248637/1‑151 (MQ=11) gCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcg > 1:3758972/1‑151 (MQ=11) aaaTGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcggc < 1:5633434/151‑1 (MQ=11) aaTGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCTTCTTTCTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTTTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTTACTTTTCCTCCCTTAcgtcg > 2:1786107/1‑151 (MQ=11) aTGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTActgccg > 1:1874780/1‑149 (MQ=11) aTGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcggcgg > 1:1455671/1‑151 (MQ=11) aTGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcggcgg < 1:3452437/151‑1 (MQ=11) aTGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcggcgg > 1:1456209/1‑151 (MQ=11) ggACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGt < 2:251978/151‑1 (MQ=11) ggACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGt > 2:6032167/1‑151 (MQ=11) ggACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGt < 1:5357451/151‑1 (MQ=11) ggACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGt < 2:6445038/151‑1 (MQ=11) gACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTc > 1:4384578/1‑151 (MQ=11) | TAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCT‑‑‑‑‑‑‑TG‑‑‑‑‑‑‑CTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTC > CP009974/4147064‑4147246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |