| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 4,286,522 | C→T | intergenic (+378/+266) | RPPX_19070 → / ← RPPX_19075 | LacI family transcriptional regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 4,286,522 | 0 | C | T | 98.8% | 1329.1 / ‑5.9 | 421 | intergenic (+378/+266) | RPPX_19070/RPPX_19075 | LacI family transcriptional regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base T (182/229); total (186/235) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 432 total aligned reads displayed.
GCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCAC > CP009974/4286374‑4286669 | gCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACctgc < 1:491320/151‑1 (MQ=255) gTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTAACCGCGAAAGGGCCGGCCCTGCTGGCCCATCTCCACccgccg > 1:7036513/1‑151 (MQ=255) ggagggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCg < 1:1388322/151‑1 (MQ=255) ggagggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCg > 1:883155/1‑151 (MQ=255) agggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGtt > 1:4215333/1‑151 (MQ=255) agggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGtt < 1:6125955/151‑1 (MQ=255) agggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGtt < 1:6848907/151‑1 (MQ=255) ggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgc < 1:7152233/151‑1 (MQ=255) ggaATCTCGCAGGCGCTTTATTATGGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgc < 2:3999025/151‑1 (MQ=255) gaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcg < 1:1490756/151‑2 (MQ=255) gaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcg < 2:5623889/151‑2 (MQ=255) aaTCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcgg < 2:3367237/151‑3 (MQ=255) tctcGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcggcc > 1:4686411/1‑151 (MQ=255) cAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcggccgcgac > 1:2997804/1‑148 (MQ=255) cAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcggccgcgac > 1:7229596/1‑148 (MQ=255) aGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGAcc < 2:4633670/151‑1 (MQ=255) ggCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCg < 2:7037302/151‑1 (MQ=255) gcTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTTCGGCCGCGACTGTAt > 1:1810422/1‑151 (MQ=255) gcTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCCACCGTAt > 1:446341/1‑151 (MQ=255) cTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTAtt > 1:5287894/1‑151 (MQ=255) cTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCGCCATAGCAGCCGCCACCGCAtc > 1:4350904/1‑150 (MQ=25) attattGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCCACCGTATTcgcg > 2:378318/1‑151 (MQ=255) tattGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGGAGGAGCGGGTGTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGGTCACCGTTGCGGCCGCGACCGTAGTCGCggg > 2:1696496/1‑151 (MQ=21) ttGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTa < 2:4690266/151‑1 (MQ=255) ccTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAAc < 2:1018041/151‑1 (MQ=255) ccTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGCTCAAc > 2:2605688/1‑151 (MQ=255) cTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCa > 1:6768460/1‑117 (MQ=255) gtgGCCGCCTCTGCGCGCTGAGAGCATATCCCCTGAGGATGGCGCCGGACCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCg < 2:3646123/151‑1 (MQ=17) tgGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTGACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGc < 1:4591833/151‑1 (MQ=255) cgccTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCAGCTGGCCAAGTCACACCCGCCGCTCACCGCTCCAGGCCCAACCATATCCCCGGGCAGACGCGCTCCt > 2:3054164/1‑151 (MQ=18) cgccTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCt < 2:3176811/151‑1 (MQ=255) ccTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTac < 2:4122853/151‑1 (MQ=255) ctctTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTaca < 2:6597395/151‑1 (MQ=255) ttCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAg > 1:5859804/1‑151 (MQ=255) gcgcTGAAAGCATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGTTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATc < 2:6972028/151‑1 (MQ=18) gcgcTGAAAACATATCCCTGGAGAATGGCGCAGGACCGTCGTATGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCTTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATc < 2:1445195/151‑1 (MQ=18) cgcTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTACTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCg > 1:5005088/1‑151 (MQ=255) gcTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGAGCGTATTCGCGGGTAAACCCGCTTCTACACAGATccg > 1:6064869/1‑149 (MQ=18) aaaaCATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGTCAATCTCGACGTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCggtggt > 2:1301043/1‑151 (MQ=18) aaaaCATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCggtggt < 2:5014443/151‑1 (MQ=255) aagcgtgtCCCTGGAGATTGGGGCAGGCGCGTCGTAGGAGCGGGTTTGCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGgtggtg < 2:5147215/144‑1 (MQ=14) tatCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGacac < 1:312949/151‑1 (MQ=255) tCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGGTCACCGCGGCCGCCGCGCCCGTATCCCCGGGCCACCCCGCCCCTACCCCGATCCgtgctgaccaccg > 2:6861024/1‑144 (MQ=17) agaATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAGACCGGCAGCTACAAAGTCCGGTGGTGGGCTCCGGTCggtg > 1:3412612/1‑151 (MQ=17) agaATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGACCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGGTGGGGCCGCGACCGTATTCGCGGCTAAACCCGCCCCTACCCAGATCGGAGGTGGACACAGGTCggtg > 2:4231103/1‑151 (MQ=18) aTGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACATGTCGGTGGGGGACACCGGGCgggggtg > 2:7128807/1‑150 (MQ=14) tGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTg > 1:1011628/1‑151 (MQ=255) gcgcAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGa > 2:3978073/1‑151 (MQ=255) cgtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtcg < 1:5353573/151‑1 (MQ=255) cgtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtcg > 1:3668869/1‑151 (MQ=255) cgtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACACGGCGGTGGTTGGACACAGGcctccg > 2:2266871/1‑147 (MQ=11) gtAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtcgt < 2:4455959/151‑1 (MQ=255) tAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTa < 1:2233874/151‑1 (MQ=255) aGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAg < 1:3253929/151‑1 (MQ=255) aGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCggtgg > 1:1194569/1‑131 (MQ=255) aGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAg > 1:1694811/1‑151 (MQ=255) aGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAg < 1:2437896/151‑1 (MQ=255) ggAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAgg < 2:1997612/151‑1 (MQ=255) ggAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGAGGTGGGCACAGCTCGGCGGTTGGACAAAGGCGGTCGTAgg > 1:6263923/1‑151 (MQ=14) gAGCGGGTTGCCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTGGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGa < 2:5365751/151‑1 (MQ=14) gCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGc < 1:5174113/151‑1 (MQ=255) gggTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCgg < 1:3205387/151‑1 (MQ=255) gggTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCCGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGAACCGTGGCGGACCCAGGCCGGCGGTTGGACACAGGCCGCCGCAGGAGCgg > 2:2925834/1‑151 (MQ=14) gggTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCAGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAACCCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGACCGTCGTAGGAGCgg < 1:6182480/151‑1 (MQ=255) ggTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCggg < 1:3491008/151‑1 (MQ=255) gTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTacac > 2:4941681/1‑96 (MQ=11) gTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCg > 1:3994489/1‑148 (MQ=255) tttACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGtt < 1:3793367/151‑1 (MQ=255) gcaCCCGCGAACGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACGGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTc < 1:3714088/149‑1 (MQ=255) caCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCa < 2:2766934/150‑1 (MQ=255) ccccGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCAc < 2:1535215/150‑1 (MQ=255) cgcgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGCAAACCCGCTCCTACACAGATCGGAGGTTGAAACAGGTCGGTGGCTGGACCCAGGCCCCCGCAAGCGCGGCGTCACCcg > 2:5695720/1‑151 (MQ=14) gcgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCcgc < 1:411171/151‑1 (MQ=255) gcgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCAGCCAGCGTATGCGCGGGGAAGGGCGCTCGTGTAGAGATCGGTGGTGGCCGCAGGTCGGAGGTTGGACACAGGCCGTCGGAGGAGCGGGTTCACCcgc > 2:6725612/1‑151 (MQ=17) cgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCcgcg > 1:1996856/1‑151 (MQ=255) gaaggagccggccTTGCTGGCTAAGCTCCACCTGCCGTTCAGCGTTGGCGCCGCCACCGTATTCGCGGGTAAACCCTCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa < 2:241773/145‑1 (MQ=17) gAATGGGCCGGCCCTGCTGGCCAATCTGCATCTGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa < 1:2804952/151‑1 (MQ=255) gAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa > 1:665582/1‑151 (MQ=255) gAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa > 2:6039609/1‑151 (MQ=255) gAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa < 1:4959448/151‑1 (MQ=255) gccgggcCTGCTGGCCAATCTCCACGTGCCGTTCACCGTTGGGGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACGGAGCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggc < 2:2480123/151‑1 (MQ=17) gccggccCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACCCAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggc > 2:4748933/1‑151 (MQ=255) cggccCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggccg < 1:2524447/151‑1 (MQ=255) ccTGCTGGCCAATCTCCCCCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggccgggcc < 2:613600/151‑1 (MQ=255) ccTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGCTCACCCGCGAACgggccgggac > 2:1886816/1‑149 (MQ=14) cggctgGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCct < 2:878392/149‑1 (MQ=255) tgGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 1:6039795/151‑1 (MQ=255) tgGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCCGTGGTGGGCCAAGGCCCGTGGTTGGAGACAGGCCGTCTGAGGAACGGGATGACCAGGGAAACGGGCGGGCctgacg > 1:6892072/1‑148 (MQ=14) tgGCCAAGCTGCACCTGCCGTTCACCGTGGTCGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 1:5650650/151‑1 (MQ=17) ggCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGGAAACCCGCGCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGGGCGGGTTCACCCGCGAAAGGGCCGGGCCGGCTgg > 1:1564729/1‑151 (MQ=18) ggCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTgg < 2:3524328/151‑1 (MQ=255) ggCCAATCTCCACCTGCCGTTCACCGTTGCCGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGGGGACACAGGTCGGTGGTTGGACCCAGCCCCTCCCACGAGCGGCTTCACCCCCGACAAGGCCGGCCcagcacc > 2:1123261/1‑148 (MQ=14) ccAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCCGGcc > 1:2650206/1‑151 (MQ=255) cAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGCGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAAACGGCCGGGCCTGCTGGCCa > 2:5480994/1‑151 (MQ=17) cAATCTCCACCTGCCGTTCACCGTTGTCGCCGCAACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGGCGGCGGGTGGACACAGTGCGCCGTAGCAGCGGGTGCACAAGCGAAAGGGCCGGGCCTGTTGGCCa > 2:4265080/1‑151 (MQ=14) tctcCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtc > 1:6474614/1‑150 (MQ=17) ctcCACCGGCCGTTCACCGTTGCGGCCGCGACCGTATTGGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtct < 2:6222530/151‑3 (MQ=17) cACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCGATCGGTGGTGGACCCAGGTCGGTGGTTGGACACGGGTCGCCGTCGAAGCGGGCTCACCCGCGACCCGGGCGGGCCTGCTGGCCGATCTccc > 2:5223853/1‑150 (MQ=14) cACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCa > 2:2233874/1‑151 (MQ=17) aCCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCAc > 1:5953595/1‑151 (MQ=255) | GCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCAC > CP009974/4286374‑4286669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |