| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 4,632,092 | C→G | intergenic (+654/‑176) | emrB → / → RPPX_20645 | multidrug resistance protein B/oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 4,632,092 | 0 | C | G | 99.4% | 555.4 / NA | 170 | intergenic (+654/‑176) | emrB/RPPX_20645 | multidrug resistance protein B/oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base G (89/80); total (90/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
Only 100 of 174 total aligned reads displayed.
AAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGATG > CP009974/4631944‑4632239 | aaaGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGACGGCCCCATCCTCGGGCCCCCGCGCTTGACGGGCCTCCATGCCCGCCACCTgcc > 1:7055587/1‑151 (MQ=11)aaaGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGCGCCTCACCGCTTGACGGGCATCCATGCCCGCCCCCTgcc > 1:6304417/1‑151 (MQ=255) aGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCtc > 1:4615641/1‑150 (MQ=14) aGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCtc < 1:1825156/151‑2 (MQ=17) tAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCtccc > 1:6765994/1‑148 (MQ=14) aCCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGCGGCCTCAGCCCCTGACCGGCATCCACGCCCGTCACCTCCCtccccc > 2:4996039/1‑146 (MQ=11) cTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCa < 2:2923435/151‑1 (MQ=2) cTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAACATCAAAAGCCa > 1:5555610/1‑151 (MQ=9) tCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCCAGGCCTGCGTTCGGCCTCCTGAAGTCGCGACGATCAAGATCACGATCAAAAGCCAg > 2:3559345/1‑151 (MQ=255) tCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAg < 1:3578627/151‑1 (MQ=9) tCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAg > 2:5539135/1‑151 (MQ=9) cACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAgt > 1:6433934/1‑150 (MQ=14) tCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCa > 1:3038556/1‑151 (MQ=16) cGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAAc < 1:1220011/151‑1 (MQ=25) cGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAAc < 2:6832863/151‑1 (MQ=255) ggCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGAACAAAAGCCAGATCAACa > 2:2600311/1‑151 (MQ=16) ctggCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAACATCAAGATCAAAAGCCAGATCAACAGcc < 1:7233350/148‑1 (MQ=255) tGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCACGATCAAAAGCCAGATCAACAGCcac > 1:6033989/1‑151 (MQ=255) tGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCcac < 2:2352084/151‑1 (MQ=255) gCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCcaca > 1:5655717/1‑151 (MQ=255) gCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCcaca > 2:208410/1‑151 (MQ=255) cTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACAt > 1:1970097/1‑151 (MQ=255) tCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATc < 1:1035482/151‑1 (MQ=255) tCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATc > 2:1256157/1‑151 (MQ=255) tCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATc > 1:1391954/1‑151 (MQ=255) cccGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCa > 1:339188/1‑151 (MQ=255) gCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAAcag < 1:2681883/151‑1 (MQ=255) gCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAAcag > 2:5609021/1‑151 (MQ=255) cAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAAcagc < 2:5781518/151‑1 (MQ=255) gACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCaga > 1:1800871/1‑151 (MQ=255) aCCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCagag < 2:6865292/151‑1 (MQ=255) cgcgCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAggg < 1:16943/151‑1 (MQ=255) gcgcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGt < 1:128805/151‑1 (MQ=255) cgcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCGGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGtt > 2:6996602/1‑151 (MQ=255) gcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTg > 1:382317/1‑151 (MQ=255) gcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTg > 1:236343/1‑151 (MQ=255) gcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTg < 1:4825397/151‑1 (MQ=255) gcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTg < 1:6476793/151‑1 (MQ=255) gcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTg > 1:3243552/1‑151 (MQ=255) ccGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTgg < 1:3712376/151‑1 (MQ=255) cGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGc < 2:3953078/151‑1 (MQ=255) cGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGc < 1:4310616/151‑1 (MQ=255) gAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCt < 1:6776415/151‑1 (MQ=255) gAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCt > 1:4664084/1‑151 (MQ=255) aaGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCtg > 2:1586802/1‑151 (MQ=255) gCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGc > 1:862381/1‑151 (MQ=255) ccccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCt < 2:1022871/151‑1 (MQ=255) ccccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCt < 2:3861846/151‑1 (MQ=255) cccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTg < 2:4084998/151‑1 (MQ=255) cATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGCGTTGGCTATGCTGAt > 2:4441806/1‑151 (MQ=255) atacTGGGACCTCAGCGCTTGAAGGGCATCAATGTCCGTCACATGAATAAGCAAGGCCTGAGTTCGGCATCATGAAGTCGCGAAGATAAAGATAAAGATCAAAAGACAGATAAACAGCCACATCAACAGCAGAGGGTTGGATGTGCTGATc < 2:2884363/148‑1 (MQ=255) aTCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATc > 2:6006403/1‑151 (MQ=255) tCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCt > 1:6388519/1‑151 (MQ=255) tCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCt < 1:3704426/151‑1 (MQ=255) ccTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCtt > 2:3990167/1‑151 (MQ=255) ccTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCtt < 1:5335078/151‑1 (MQ=255) ccTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCtt > 1:3989891/1‑151 (MQ=255) ggCCTCAGCGCTTGCCGGCCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCa < 2:6909956/151‑1 (MQ=255) ggCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCa < 2:2031584/151‑1 (MQ=255) gCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCAt < 1:845055/151‑1 (MQ=255) gCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCAt < 1:3494797/151‑1 (MQ=255) cTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTc < 2:6712534/151‑1 (MQ=255) tCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTcc > 1:4189247/1‑151 (MQ=255) tCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCCCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGATGGCTGTGCTGATCTGCGTCATTcc > 2:303479/1‑151 (MQ=255) aGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCaa > 2:4847514/1‑151 (MQ=255) cTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCa > 1:4989013/1‑151 (MQ=255) cTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCa < 2:4287445/151‑1 (MQ=255) ttGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAg > 1:2683376/1‑151 (MQ=255) ttGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCCGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTCACCCTCGTCCCTCCAACGCAg > 2:4394584/1‑151 (MQ=18) gACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAgcg < 2:2461179/151‑1 (MQ=255) gcGGGCATCCAGGCCCGTCACCTGCCGCCGCAAGGCCTGCGTGCGGCCTCCTGAAGTCGCGAAGATCAAGAGCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAgcgc < 2:6412906/150‑1 (MQ=25) aCGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAgcgc > 1:619678/1‑151 (MQ=255) aCGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAgcgc < 1:3337701/151‑1 (MQ=255) cGGGCATCCATGCCCGGCACCTGCCGCCGGCAGGCCTGCGTTCGGCCCCCTGAAGGCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGcc < 1:3750094/151‑1 (MQ=21) gggCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCa > 2:3187450/1‑151 (MQ=255) cATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCAttt > 1:5481304/1‑151 (MQ=255) aTCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTc < 2:1320743/151‑1 (MQ=255) aTCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTc < 2:4114170/151‑1 (MQ=255) tCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCg > 2:3958691/1‑151 (MQ=255) cATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGcc < 1:4241526/151‑1 (MQ=255) aTGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCt < 2:49071/151‑1 (MQ=255) tGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCCACGCAGCGCCATTTCGCCtc > 2:7215684/1‑150 (MQ=255) tGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTa < 1:4000990/151‑1 (MQ=255) cccGTCACCTGCCTCCGCAAGGACTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTAtt < 2:4453137/151‑1 (MQ=255) ccGTCACCTGCGTCCGCAAGGCCTGCGTTCGGCCTGCTGAAGTAGCGAAGAACAAGATCAAGAGCACAAGCCAGATCAACAGCCACATCAACAGCAGCGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCCGTTCGCCTATTg > 2:3683413/1‑151 (MQ=21) ccGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTg > 2:447450/1‑151 (MQ=255) cGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGt < 2:1852423/151‑1 (MQ=255) cGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGt < 1:5920329/151‑1 (MQ=255) gTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTc > 1:778691/1‑151 (MQ=255) tCACCTGCCTCCGCAAGGCCTGCGTTCGGCCGCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGCTCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCg > 2:6637751/1‑151 (MQ=255) cACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGa > 2:5425144/1‑151 (MQ=255) cACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGa > 1:5182328/1‑151 (MQ=255) cACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGa < 1:726988/151‑1 (MQ=255) cACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGa < 1:5925537/151‑1 (MQ=255) cACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGa > 1:5466451/1‑151 (MQ=255) aCCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGTCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGAt < 2:4654880/151‑1 (MQ=255) aCCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGAt > 1:933804/1‑151 (MQ=255) aCCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGAt > 1:1018091/1‑151 (MQ=255) ccTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGATg < 2:3452910/151‑1 (MQ=255) ccTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGATg > 1:2233201/1‑151 (MQ=255) | AAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAAAGCCAGATCAACAGCCACATCAACAGCAGAGGGTTGGCTGTGCTGATCTTCGTCATTCCAACGCAGCGCCATTTCGCCTATTGTCGATG > CP009974/4631944‑4632239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |