Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 25,739 A→T intergenic (+164/‑407) RPPX_00140 → / → RPPX_00145 MarR family transcriptional regulator/(2Fe‑2S)‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00997425,7390AT96.8% 1016.8 / 10.9 319intergenic (+164/‑407)RPPX_00140/RPPX_00145MarR family transcriptional regulator/(2Fe‑2S)‑binding protein
Reads supporting (aligned to +/- strand):  ref base A (2/8);  new base T (144/159);  total (149/170)
Fisher's exact test for biased strand distribution p-value = 1.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 324 total aligned reads displayed.

CCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGATCACCGTTGCCGCC  >  CP009974/25591‑25895
                                                                                                                                                    |                                                                                                                                                            
ccGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCtcctcc                                                                                                                                                            <  1:3422888/151‑1 (MQ=255)
 cgcgGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTccc                                                                                                                                                           <  2:4765412/151‑1 (MQ=255)
 cgcgGGGGCCGTCACAGATACGCGGCGTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATGGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTccc                                                                                                                                                           <  2:2218511/151‑1 (MQ=255)
  gcgGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCccg                                                                                                                                                          <  2:1073840/151‑1 (MQ=255)
    ggTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCccgcc                                                                                                                                                        <  2:296305/151‑1 (MQ=255)
     gTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCccgccg                                                                                                                                                       >  1:3723859/1‑151 (MQ=255)
      tGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGt                                                                                                                                                      <  1:429386/151‑1 (MQ=255)
       ggCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGtt                                                                                                                                                     <  1:1066383/151‑1 (MQ=255)
         ccGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCa                                                                                                                                                   >  1:5593558/1‑151 (MQ=255)
           gTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCAcc                                                                                                                                                 >  1:3872540/1‑151 (MQ=255)
           gTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCAcc                                                                                                                                                 >  1:6883462/1‑151 (MQ=255)
           gTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCAcc                                                                                                                                                 >  1:4135052/1‑151 (MQ=255)
               caaacaCGCGGCCTGAGAGATCAAGCACATGGCGAGCAAAATCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTg                                                                                                                                             <  1:5020841/146‑1 (MQ=25)
               caGATACGCGGCCTGAGAGATCAAGCACATCTCGAGCAAGCTCGCTCACATTGGACACGCATCGGCGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTATCCAATCTCCCCCCCCCCGTCACCGttt                                                                                                                                             >  2:3342851/1‑150 (MQ=21)
                  aTACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTaccg                                                                                                                                          >  1:4080820/1‑151 (MQ=255)
                   tACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgc                                                                                                                                         >  1:2545436/1‑151 (MQ=255)
                   caCGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCCCATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgc                                                                                                                                         <  2:6179787/150‑1 (MQ=255)
                     cgcgGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgccg                                                                                                                                       <  2:2370896/151‑1 (MQ=255)
                      gcgGCCTGAGAAATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTgccgccgc                                                                                                                                      <  1:2113287/151‑1 (MQ=255)
                       cgGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTaccgccgcc                                                                                                                                     >  2:5894476/1‑151 (MQ=255)
                         gCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCAc                                                                                                                                   <  1:1291438/151‑1 (MQ=255)
                          ccTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGGTCACCGTTGCCGCCGCCAcc                                                                                                                                  >  2:7130773/1‑151 (MQ=255)
                           cTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCg                                                                                                                                 >  1:1000319/1‑151 (MQ=255)
                           cTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCg                                                                                                                                 <  1:2197184/151‑1 (MQ=255)
                              agagaTCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCCCCCGCCGCTCACCGTTGCCGCCGCCACCGTAt                                                                                                                              >  2:3510525/1‑151 (MQ=255)
                               gagaTCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTAtt                                                                                                                             <  1:6644067/151‑1 (MQ=255)
                                 gaTCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTcg                                                                                                                           <  1:1599120/151‑1 (MQ=255)
                                  aTCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTcgc                                                                                                                          <  1:6231835/151‑1 (MQ=255)
                                     aaGCACGTCGCGGGGAAGCTCGCTGACCTTGGACACGCATCGGTGGTTGGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGATCACCGTTACCGCCGCCACCGTATTCGCggg                                                                                                                       <  1:1297597/151‑1 (MQ=11)
                                      aGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGt                                                                                                                      <  2:6363478/151‑1 (MQ=255)
                                       gCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTa                                                                                                                     <  2:706170/151‑1 (MQ=255)
                                           aTCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAAcc                                                                                                                 >  2:469491/1‑151 (MQ=255)
                                           aTCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAAcc                                                                                                                 >  1:5284180/1‑151 (MQ=255)
                                             cgcgAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAAcccc                                                                                                               >  2:17954/1‑150 (MQ=255)
                                              gcgAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGc                                                                                                              >  1:3587165/1‑151 (MQ=255)
                                                 aGCAAGCTCGCTCACATTGGACACGCATCGGGGGTTGGCCACAGGCCGTCGTAGGAGCGGGCTCACCCGCGAATGGGCCGGCCCTGCTAGCCTACCCCCTCCCGCCGATCACCGCTGCCGCCGCCACCGAACGCGCGGGCGACCCCGCGcc                                                                                                           >  2:1085644/1‑151 (MQ=14)
                                                  gCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCt                                                                                                          <  2:80150/151‑1 (MQ=255)
                                                   cAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                                         >  1:2440839/1‑151 (MQ=255)
                                                   cAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                                         <  1:4226228/151‑1 (MQ=255)
                                                   cAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                                         <  1:5702063/151‑1 (MQ=255)
                                                   cAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                                         >  1:3287321/1‑151 (MQ=255)
                                                       ctcgctcACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTacaca                                                                                                     <  1:931780/151‑1 (MQ=255)
                                                          gctcACATTGGCCACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGCGCCGGCCCTGCCAGCAAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCGCCGGATTCGCGCGCCAGCCCCCTCATacacccac                                                                                                  >  2:4089939/1‑147 (MQ=14)
                                                           ctcACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCa                                                                                                 <  1:4810157/151‑1 (MQ=255)
                                                             cacaTTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGATCACCGTTACCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATc                                                                                               >  2:3216645/1‑151 (MQ=255)
                                                                  tGGACACGTCTCGGTGGTTGGCCCCCGCCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTTTTCGCGGGTAAACCCGCTCCTACACACGCATCggggg                                                                                          <  2:1156350/151‑1 (MQ=14)
                                                                   ggACATGCATCGGTAGTAGGACGCAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGt                                                                                         <  2:1669410/151‑1 (MQ=14)
                                                                     acacGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTc                                                                                       <  1:6460524/151‑1 (MQ=255)
                                                                      cacGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCg                                                                                      <  1:7018758/151‑1 (MQ=255)
                                                                         gCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGtcggccc                                                                                   >  1:4836394/1‑145 (MQ=255)
                                                                           aTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGcaca                                                                                 >  1:142962/1‑151 (MQ=255)
                                                                            tCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAg                                                                                >  1:824173/1‑151 (MQ=255)
                                                                               gtggtTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGcc                                                                             <  1:7075038/151‑1 (MQ=255)
                                                                               gtggtTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGcc                                                                             <  1:4469400/151‑1 (MQ=255)
                                                                                tggtTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCCAAGGCcg                                                                            >  1:1796470/1‑151 (MQ=255)
                                                                                 ggtTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCACCGGGGGTTCGGCACACGCcgt                                                                           >  2:5220025/1‑151 (MQ=255)
                                                                                  gtTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCcgtc                                                                          >  1:4418232/1‑151 (MQ=255)
                                                                                   ttGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCcgtcg                                                                         <  2:4443559/151‑1 (MQ=255)
                                                                                   ttGGACAAAGGCCGTCATAGGATCGTGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCcgtcg                                                                         <  1:2798331/151‑1 (MQ=17)
                                                                                            ggCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCgg                                                                <  1:1642165/151‑1 (MQ=255)
                                                                                             cccGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCggg                                                               <  1:4675061/150‑1 (MQ=255)
                                                                                               cggcatAGAAGCGGGTTCACCCGCGACTGGGCCGGTCCTCCTATCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGATAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGtt                                                             <  2:3643564/146‑1 (MQ=17)
                                                                                                gtcgtAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTCCGCCACGGGCCGTCCGAGGCGCgggcgc                                                            >  2:5741627/1‑148 (MQ=14)
                                                                                                  cgtAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCAc                                                          <  1:1932115/151‑1 (MQ=255)
                                                                                                     aGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCcg                                                       <  2:1217638/151‑1 (MQ=255)
                                                                                                     aGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGGTCGGCCCACGCCGTCGTAGGCGCGGGTTCAcccc                                                       >  1:6348364/1‑150 (MQ=17)
                                                                                                       gAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCcgcg                                                     >  2:6947343/1‑151 (MQ=255)
                                                                                                            ggTTCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCCCCCGCGAAAgg                                                >  2:1983471/1‑151 (MQ=255)
                                                                                                              gtcgcccGCGAATGGGCCGGTCCTGCTAGCCAATCGCCTCCCGCCGTTCACCGTTGCGGCCGCCACCGTATTCGCCGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggc                                              <  2:6602951/147‑1 (MQ=17)
                                                                                                               tCACCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGCGCACCCGCGAAAGggcc                                             >  2:3065575/1‑151 (MQ=255)
                                                                                                                 ccccGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggccgg                                           <  1:5853056/150‑1 (MQ=255)
                                                                                                                 aCCGGCAAAGGGGCCGGTCCGGCTAGCCAAGCTCCTCCGGCCCTGCGCCCTGGCGGCCAGCTCCGGATACGCGGGGACGCCCGCTCCTACACACGCAGCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggccgg                                           <  2:4977817/151‑1 (MQ=9)
                                                                                                                 aCCCGCGAATGGGCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggccgg                                           >  1:1106817/1‑151 (MQ=255)
                                                                                                                   cggcgAGTGGGCCGGTCCTGGTGGCCAGTCGCCTCCGGCCGGTCACCGTTGGCGCCGCCACCGTGGTCGCGGGTAGGCCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggccggcc                                         <  2:3924294/149‑1 (MQ=17)
                                                                                                                            ggCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGcc                                <  1:6522302/151‑1 (MQ=255)
                                                                                                                            ggCCGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGcc                                >  1:3839141/1‑151 (MQ=255)
                                                                                                                               ggggccTGCTGGCCAATCTGCTCCCGCCGTTCACTGTTGCCGCCGCCACCGTCTTCGCGGGTAAACCCGCTCCTACACACGCATCGGTGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCCCCCGCGAAAGGGCCGGCCCTGCTGGCCAAt                             <  2:6670110/147‑1 (MQ=14)
                                                                                                                               cGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAt                             >  1:5421248/1‑151 (MQ=255)
                                                                                                                               cGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAt                             <  1:3036599/151‑1 (MQ=255)
                                                                                                                               cGGTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGCCACAGGCCGTCGCAGGCGCGGGTTCACCCGCGAAAGGGCCGCCCCTGCTGGcctac                             >  2:4646200/1‑148 (MQ=14)
                                                                                                                                 gTCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCCCCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtct                           <  2:5586519/151‑1 (MQ=255)
                                                                                                                                  tCCTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctc                          >  1:3096987/1‑151 (MQ=255)
                                                                                                                                  ggcggctcGCCGACCTCCTCCCGCCGTTCGCCGTTGCCGCCGCCACCGTATTGGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctc                          <  2:4208970/147‑1 (MQ=14)
                                                                                                                                   ccTGCTAGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACACACGCATCGGGGGTTCGGCCCGGGCGCTGCTCGGAGCGGGTGCACCCGCTAAAGGCCCCGCCCTGCTGGCCTATCTcc                         >  2:1625026/1‑151 (MQ=14)
                                                                                                                                   ccTGCTAGCCAATCTCCTCCCGCCGTTCACCGTAGCCGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTcc                         <  2:2595851/151‑1 (MQ=255)
                                                                                                                                     tgctaGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCCATCTCCAc                       >  1:2037820/1‑151 (MQ=255)
                                                                                                                                      gctaGCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCAcc                      <  1:2679749/151‑1 (MQ=255)
                                                                                                                                      gctaGCCAACCTCCTCCCGCCCTTCACCGTGGCCGCCGCTACCGTATTCGCGGGTTAACCCGGTCCTACACACGCATCGGGGGTGCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCAcc                      <  1:766609/151‑1 (MQ=14)
                                                                                                                                       ctagCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggcc                                             <  2:6030135/124‑1 (MQ=255)
                                                                                                                                       ctagCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGggcc                                             >  1:6031725/4‑127 (MQ=255)
                                                                                                                                       ctagCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCAccc                     <  1:6139130/148‑1 (MQ=255)
                                                                                                                                       ctagCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGCCCGGCTCCGGCCGTCCTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCCCCTGGCCAACcccccccc                     >  2:2456985/4‑151 (MQ=14)
                                                                                                                                       ctagCCAAGCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCAccc                     <  2:5391087/148‑1 (MQ=255)
                                                                                                                                        tagCCAATCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACccg                    <  1:6606194/149‑1 (MQ=255)
                                                                                                                                          gCCACTCGCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACccgcc                  <  2:2685552/151‑1 (MQ=255)
                                                                                                                                          gCCAATCTCCTCCCGCCGTGCACCGTTGCCGCCGCCACCGTATGCGCGGGTAAACCCGCTCCTACACGCGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACccgcc                  <  2:2128649/151‑1 (MQ=255)
                                                                                                                                             aaTCTCCTCCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCCCAGGCCGTGCTAGGAGCGGGTTCACCCGCGAAAGGGCCGACCCTGCTGGCCCCTCTCCACCcgacgac               >  2:3721566/1‑150 (MQ=14)
                                                                                                                                             aaTCTCCTCCCGCCGTTCACCGTGGCCGCCCCCACCGTATTCGCGGGTAACCCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGAt               <  1:4592662/151‑1 (MQ=255)
                                                                                                                                                ctcCCCCCGCCGTTCACCGTTGCCGGCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACAAAT‑‑‑‑‑‑‑‑‑‑GCACAGGCCTTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCTTGCTGGCCAATCTCCACCCGCCGTTCACCGTTgccgcc  <  2:3581393/151‑1 (MQ=2)
                                                                                                                                                 tcctccCGCCGTTCACCGTTGCCACCGCCACCGTATTCGCGGGTAAACCCGCGCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGATCAcc           <  2:861912/151‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                            
CCGCGGTGGCCGTCACAGATACGCGGCCTGAGAGATCAAGCACATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGTCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGTTCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGATCACCGTTGCCGCC  >  CP009974/25591‑25895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑